Clone Sequence Records
BO11558.3prime Sequence
805 bp (744 high quality bases) assembled on 2006-04-19
> BO11558.3prime
ATGGTCTAGAAAGCTTGCTGATAATGCTGTCGGTATGGTAGTAGCCTCCA
CCTCGGGATCCTTCTGCTCCCGGCCGGCCTCCTCCTGTTGCTGCCCCTTC
TCCTGACTCTTCTCGAAGTCATACGCACCCACCGATAGGAAATCGTCGAG
CCAACGCTTCTCATTTTCGTTCAGCTCCGTGGCGATTGTGGTGGTGGCTA
CGACCTCCTCTTCGTGCTTGTCCTCCACCTCTTCTGCCTTTTCTTCCACA
TTATCAATGCTAATTGCCGTGGCCGTCTCATTAGTGGCGTCAGGTGGACT
AAGCTTGGTGACTGCTATAGATGCGGTTAATACAGCAGGAGCTGCCGAAT
CCAGAGGGGCAGCCTCGGCAGGAGAAGGAGCAGCAGGAGAAGGTGCACGA
ACAGGAGCCGCTGAAGCGGTTTTGGTCAGACTGACCTTCCGCCTCATAGG
TCCCAGGTTAGTGAGTATCTGTGACTCCAGATTGGCCATCTCTGCGTCGC
TCAGTTCTTTCCTCTGACCGCCATTAAAGATGCTATTACTCACATATTTC
TCGTTAAGCAGTCGCGCCTTCTCTGCCGGATCTCCGGCCACCGAGTTCAC
CGCTGGGTCGGTGCAATTGGAGGTAACCAGTTCGCGGTGCTTGTCGCCCC
ACTGGGTGCGCAGCCAAGGCTTTTCCAGGATGACCAGGCGGCAGACTATG
TCCGCTTCCGCCGGCTGTATTGCCTTTGTGTCTAGCGCGTTTAGCAAGAT
CTCATAGCGCACTCCGGCGGTGAATTCCCCGAAGGCGTCGATGATATTCA
CAAAG
BO11558.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12163-PA | 1845 | CG12163-RA | 264..527 | 805..542 | 1220 | 98.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12163-RC | 1425 | CG12163-RC | 478..1264 | 805..19 | 3875 | 99.5 | Minus |
CG12163-RA | 2299 | CG12163-RA | 478..741 | 805..542 | 1260 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5243313..5244099 | 19..805 | 3875 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:51:26 has no hits.
BO11558.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:09:58 Download gff for
BO11558.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-PA | 264..527 | 542..805 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:34:58 Download gff for
BO11558.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-PA | 264..527 | 542..805 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:36:34 Download gff for
BO11558.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-RC | 478..1272 | 11..805 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:05 Download gff for
BO11558.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-RC | 478..1272 | 11..805 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:05 Download gff for
BO11558.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5243305..5244099 | 11..805 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:36:34 Download gff for
BO11558.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1069027..1069821 | 11..805 | 98 | | Plus |
BO11558.5prime Sequence
835 bp (754 high quality bases) assembled on 2006-04-19
> BO11558.5prime
GAAGTTATCAGTCGACATGAGGCTGTTTGCGGCAGCAACAGTTGCGCTTG
TATTGCTTCTGGGCCAAGCAGCTGGCGAGGAGCTTGCGGAGGAGCGAGCG
GGACAGGCACAGGGCGATGCGGAGAGCACGGAATCTTCAGAAACAACAAC
GGACCAGGCGGTGAGTGAGCCCCCGATCACGCTGGTCCACGTTCTGAATC
CCGGCGAGCGGGAGTATTTGTCACCCAACCTGATTGGTGTCCAGAACATT
GCGATGACCTTCCTGCCACTGTCGATGAACTTTGTGAATATCATCGACGC
CTTTCGGGAAATCACCGCCGGAGTGCGCTATGAGATCCTGCTAAACGCGC
TAGACACAAAGGCAATACAGCCGGCGGAAGCGGACATAGTCTGCCGCCTG
GTCATCCTGGAAAAGCCTTGGCTGCGCACCCAGTGGGGCGACAAGCACCG
CGAACTGGTTACCTCCAATTGCACCGACCCAGCGGTGAACTCGGTGGCCG
GAGATCCGGCAGAGAAGGCGCGACTGCTTAACGAGAAATATGTGAGTAAT
AGCATCTTTAATGGCGGTCAGAGGAAAGAACTGAGCGACGCAGAGATGGC
CAATCTGGAGTCACAGATACTCACTAACCTGGGACCTATGAGGCGGAAGG
TCAGTCTGACCAAAACCGCTTCAGCGGCTCCTGTTCGTGCACCTTCTCCT
GCTGCTCCTTCTCCTGCCGAGGCTGCCCCTCTGGATTCGGCAGCTCCTGC
TGTATTAACCGCATCTATAGCAGTCACCAAGCTTAGTCCACCTGACGCCA
CTAATGAGACGGCCACGGCAATTAGCATTGATAAT
BO11558.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12163-PA | 1845 | CG12163-RA | 1..527 | 17..543 | 2635 | 100 | Plus |
CG12163-PB | 1428 | CG12163-RB | 1..108 | 17..124 | 540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12163-RC | 1425 | CG12163-RC | 213..1033 | 15..835 | 4105 | 100 | Plus |
CG12163-RA | 2299 | CG12163-RA | 213..741 | 15..543 | 2645 | 100 | Plus |
CG12163-RB | 1882 | CG12163-RB | 213..322 | 15..124 | 550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5243544..5244256 | 835..123 | 3565 | 100 | Minus |
3R | 32079331 | 3R | 5251424..5251533 | 124..15 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:58:30 has no hits.
BO11558.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:00 Download gff for
BO11558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-PA | 1..527 | 17..543 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:34:59 Download gff for
BO11558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-PA | 1..527 | 17..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:51:27 Download gff for
BO11558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-RC | 213..1033 | 15..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:22:18 Download gff for
BO11558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-RC | 213..1033 | 15..835 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:22:18 Download gff for
BO11558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5243544..5244254 | 125..835 | 100 | <- | Minus |
3R | 5251424..5251533 | 15..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:51:27 Download gff for
BO11558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1069266..1069976 | 125..835 | 100 | <- | Minus |
arm_3R | 1077146..1077255 | 15..124 | 100 | | Minus |
BO11558.complete Sequence
1084 bp assembled on 2006-10-10
GenBank Submission: KX795512
> BO11558.complete
GAAGTTATCAGTCGACATGAGGCTGTTTGCGGCAGCAACAGTTGCGCTTG
TATTGCTTCTGGGCCAAGCAGCTGGCGAGGAGCTTGCGGAGGAGCGAGCG
GGACAGGCACAGGGCGATGCGGAGAGCACGGAATCTTCAGAAACAACAAC
GGACCAGGCGGTGAGTGAGCCCCCGATCACGCTGGTCCACGTTCTGAATC
CCGGCGAGCGGGAGTATTTGTCACCCAACCTGATTGGTGTCCAGAACATT
GCGATGACCTTCCTGCCACTGTCGATGAACTTTGTGAATATCATCGACGC
CTTTCGGGAAATCACCGCCGGAGTGCGCTATGAGATCCTGCTAAACGCGC
TAGACACAAAGGCAATACAGCCGGCGGAAGCGGACATAGTCTGCCGCCTG
GTCATCCTGGAAAAGCCTTGGCTGCGCACCCAGTGGGGCGACAAGCACCG
CGAACTGGTTACCTCCAATTGCACCGACCCAGCGGTGAACTCGGTGGCCG
GAGATCCGGCAGAGAAGGCGCGACTGCTTAACGAGAAATATGTGAGTAAT
AGCATCTTTAATGGCGGTCAGAGGAAAGAACTGAGCGACGCAGAGATGGC
CAATCTGGAGTCACAGATACTCACTAACCTGGGACCTATGAGGCGGAAGG
TCAGTCTGACCAAAACCGCTTCAGCGGCTCCTGTTCGTGCACCTTCTCCT
GCTGCTCCTTCTCCTGCCGAGGCTGCCCCTCTGGATTCGGCAGCTCCTGC
TGTATTAACCGCATCTATAGCAGTCACCAAGCTTAGTCCACCTGACGCCA
CTAATGAGACGGCCACGGCAATTAGCATTGATAATGTGGAAGAAAAGGCA
GAAGAGGTGGAGGACAAGCACGAAGAGGAGGTCGTAGCCACCACCACAAT
CGCCACGGAGCTGAACGAAAATGAGAAGCGTTGGCTCGACGATTTCCTAT
CGGTGGGTGCGTATGACTTCGAGAAGAGTCAGGAGAAGGGGCAGCAACAG
GAGGAGGCCGGCCGGGAGCAGAAGGATCCCGAGGTGGAGGCTACTACCAT
ACCGACAGCATTATCAGCAAGCTTTCTAGACCAT
BO11558.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12163-RC | 1053 | CG12163-PC | 1..1050 | 17..1066 | 5250 | 100 | Plus |
CG12163-RA | 1845 | CG12163-PA | 1..527 | 17..543 | 2635 | 100 | Plus |
CG12163-RB | 1428 | CG12163-PB | 1..108 | 17..124 | 540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12163-RC | 1425 | CG12163-RC | 213..1264 | 15..1066 | 5260 | 100 | Plus |
CG12163-RA | 2299 | CG12163-RA | 213..741 | 15..543 | 2645 | 100 | Plus |
CG12163-RB | 1882 | CG12163-RB | 213..322 | 15..124 | 550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5243313..5244256 | 1066..123 | 4720 | 100 | Minus |
3R | 32079331 | 3R | 5251424..5251533 | 124..15 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:22:29 has no hits.
BO11558.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:22 Download gff for
BO11558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-RA | 1..527 | 17..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:34 Download gff for
BO11558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-RA | 214..742 | 15..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:13 Download gff for
BO11558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-RC | 215..1264 | 17..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:22 Download gff for
BO11558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-RA | 214..742 | 15..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:31 Download gff for
BO11558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12163-RC | 215..1264 | 17..1068 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:31 Download gff for
BO11558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5243310..5244254 | 125..1068 | 99 | <- | Minus |
3R | 5251424..5251531 | 17..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:13 Download gff for
BO11558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1069032..1069976 | 125..1068 | 99 | <- | Minus |
arm_3R | 1077146..1077253 | 17..124 | 100 | | Minus |
BO11558.pep Sequence
Translation from 16 to 1084
> BO11558.pep
MRLFAAATVALVLLLGQAAGEELAEERAGQAQGDAESTESSETTTDQAVS
EPPITLVHVLNPGEREYLSPNLIGVQNIAMTFLPLSMNFVNIIDAFREIT
AGVRYEILLNALDTKAIQPAEADIVCRLVILEKPWLRTQWGDKHRELVTS
NCTDPAVNSVAGDPAEKARLLNEKYVSNSIFNGGQRKELSDAEMANLESQ
ILTNLGPMRRKVSLTKTASAAPVRAPSPAAPSPAEAAPLDSAAPAVLTAS
IAVTKLSPPDATNETATAISIDNVEEKAEEVEDKHEEEVVATTTIATELN
ENEKRWLDDFLSVGAYDFEKSQEKGQQQEEAGREQKDPEVEATTIPTALS
ASFLDH
BO11558.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12163-PC | 350 | CG12163-PC | 1..350 | 1..350 | 1746 | 100 | Plus |
CG12163-PA | 614 | CG12163-PA | 1..179 | 1..179 | 888 | 98.9 | Plus |
CG12163-PB | 475 | CG12163-PB | 1..138 | 1..157 | 184 | 37.6 | Plus |