Clone BO11558 Report

Search the DGRC for BO11558

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:115
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG12163-RC
Protein status:BO11558.pep:
Sequenced Size:1084

Clone Sequence Records

BO11558.3prime Sequence

805 bp (744 high quality bases) assembled on 2006-04-19

> BO11558.3prime
ATGGTCTAGAAAGCTTGCTGATAATGCTGTCGGTATGGTAGTAGCCTCCA
CCTCGGGATCCTTCTGCTCCCGGCCGGCCTCCTCCTGTTGCTGCCCCTTC
TCCTGACTCTTCTCGAAGTCATACGCACCCACCGATAGGAAATCGTCGAG
CCAACGCTTCTCATTTTCGTTCAGCTCCGTGGCGATTGTGGTGGTGGCTA
CGACCTCCTCTTCGTGCTTGTCCTCCACCTCTTCTGCCTTTTCTTCCACA
TTATCAATGCTAATTGCCGTGGCCGTCTCATTAGTGGCGTCAGGTGGACT
AAGCTTGGTGACTGCTATAGATGCGGTTAATACAGCAGGAGCTGCCGAAT
CCAGAGGGGCAGCCTCGGCAGGAGAAGGAGCAGCAGGAGAAGGTGCACGA
ACAGGAGCCGCTGAAGCGGTTTTGGTCAGACTGACCTTCCGCCTCATAGG
TCCCAGGTTAGTGAGTATCTGTGACTCCAGATTGGCCATCTCTGCGTCGC
TCAGTTCTTTCCTCTGACCGCCATTAAAGATGCTATTACTCACATATTTC
TCGTTAAGCAGTCGCGCCTTCTCTGCCGGATCTCCGGCCACCGAGTTCAC
CGCTGGGTCGGTGCAATTGGAGGTAACCAGTTCGCGGTGCTTGTCGCCCC
ACTGGGTGCGCAGCCAAGGCTTTTCCAGGATGACCAGGCGGCAGACTATG
TCCGCTTCCGCCGGCTGTATTGCCTTTGTGTCTAGCGCGTTTAGCAAGAT
CTCATAGCGCACTCCGGCGGTGAATTCCCCGAAGGCGTCGATGATATTCA
CAAAG

BO11558.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG12163-PA 1845 CG12163-RA 264..527 805..542 1220 98.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12163-RC 1425 CG12163-RC 478..1264 805..19 3875 99.5 Minus
CG12163-RA 2299 CG12163-RA 478..741 805..542 1260 98.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5243313..5244099 19..805 3875 99.5 Plus
Blast to na_te.dros performed on 2015-02-11 10:51:26 has no hits.

BO11558.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:09:58 Download gff for BO11558.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12163-PA 264..527 542..805 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:34:58 Download gff for BO11558.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12163-PA 264..527 542..805 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:36:34 Download gff for BO11558.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12163-RC 478..1272 11..805 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:05 Download gff for BO11558.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12163-RC 478..1272 11..805 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:05 Download gff for BO11558.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5243305..5244099 11..805 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:36:34 Download gff for BO11558.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1069027..1069821 11..805 98   Plus

BO11558.5prime Sequence

835 bp (754 high quality bases) assembled on 2006-04-19

> BO11558.5prime
GAAGTTATCAGTCGACATGAGGCTGTTTGCGGCAGCAACAGTTGCGCTTG
TATTGCTTCTGGGCCAAGCAGCTGGCGAGGAGCTTGCGGAGGAGCGAGCG
GGACAGGCACAGGGCGATGCGGAGAGCACGGAATCTTCAGAAACAACAAC
GGACCAGGCGGTGAGTGAGCCCCCGATCACGCTGGTCCACGTTCTGAATC
CCGGCGAGCGGGAGTATTTGTCACCCAACCTGATTGGTGTCCAGAACATT
GCGATGACCTTCCTGCCACTGTCGATGAACTTTGTGAATATCATCGACGC
CTTTCGGGAAATCACCGCCGGAGTGCGCTATGAGATCCTGCTAAACGCGC
TAGACACAAAGGCAATACAGCCGGCGGAAGCGGACATAGTCTGCCGCCTG
GTCATCCTGGAAAAGCCTTGGCTGCGCACCCAGTGGGGCGACAAGCACCG
CGAACTGGTTACCTCCAATTGCACCGACCCAGCGGTGAACTCGGTGGCCG
GAGATCCGGCAGAGAAGGCGCGACTGCTTAACGAGAAATATGTGAGTAAT
AGCATCTTTAATGGCGGTCAGAGGAAAGAACTGAGCGACGCAGAGATGGC
CAATCTGGAGTCACAGATACTCACTAACCTGGGACCTATGAGGCGGAAGG
TCAGTCTGACCAAAACCGCTTCAGCGGCTCCTGTTCGTGCACCTTCTCCT
GCTGCTCCTTCTCCTGCCGAGGCTGCCCCTCTGGATTCGGCAGCTCCTGC
TGTATTAACCGCATCTATAGCAGTCACCAAGCTTAGTCCACCTGACGCCA
CTAATGAGACGGCCACGGCAATTAGCATTGATAAT

BO11558.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12163-PA 1845 CG12163-RA 1..527 17..543 2635 100 Plus
CG12163-PB 1428 CG12163-RB 1..108 17..124 540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12163-RC 1425 CG12163-RC 213..1033 15..835 4105 100 Plus
CG12163-RA 2299 CG12163-RA 213..741 15..543 2645 100 Plus
CG12163-RB 1882 CG12163-RB 213..322 15..124 550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5243544..5244256 835..123 3565 100 Minus
3R 32079331 3R 5251424..5251533 124..15 550 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:58:30 has no hits.

BO11558.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:00 Download gff for BO11558.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12163-PA 1..527 17..543 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:34:59 Download gff for BO11558.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12163-PA 1..527 17..543 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:51:27 Download gff for BO11558.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12163-RC 213..1033 15..835 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:22:18 Download gff for BO11558.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12163-RC 213..1033 15..835 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:22:18 Download gff for BO11558.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5243544..5244254 125..835 100 <- Minus
3R 5251424..5251533 15..124 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:51:27 Download gff for BO11558.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1069266..1069976 125..835 100 <- Minus
arm_3R 1077146..1077255 15..124 100   Minus

BO11558.complete Sequence

1084 bp assembled on 2006-10-10

GenBank Submission: KX795512

> BO11558.complete
GAAGTTATCAGTCGACATGAGGCTGTTTGCGGCAGCAACAGTTGCGCTTG
TATTGCTTCTGGGCCAAGCAGCTGGCGAGGAGCTTGCGGAGGAGCGAGCG
GGACAGGCACAGGGCGATGCGGAGAGCACGGAATCTTCAGAAACAACAAC
GGACCAGGCGGTGAGTGAGCCCCCGATCACGCTGGTCCACGTTCTGAATC
CCGGCGAGCGGGAGTATTTGTCACCCAACCTGATTGGTGTCCAGAACATT
GCGATGACCTTCCTGCCACTGTCGATGAACTTTGTGAATATCATCGACGC
CTTTCGGGAAATCACCGCCGGAGTGCGCTATGAGATCCTGCTAAACGCGC
TAGACACAAAGGCAATACAGCCGGCGGAAGCGGACATAGTCTGCCGCCTG
GTCATCCTGGAAAAGCCTTGGCTGCGCACCCAGTGGGGCGACAAGCACCG
CGAACTGGTTACCTCCAATTGCACCGACCCAGCGGTGAACTCGGTGGCCG
GAGATCCGGCAGAGAAGGCGCGACTGCTTAACGAGAAATATGTGAGTAAT
AGCATCTTTAATGGCGGTCAGAGGAAAGAACTGAGCGACGCAGAGATGGC
CAATCTGGAGTCACAGATACTCACTAACCTGGGACCTATGAGGCGGAAGG
TCAGTCTGACCAAAACCGCTTCAGCGGCTCCTGTTCGTGCACCTTCTCCT
GCTGCTCCTTCTCCTGCCGAGGCTGCCCCTCTGGATTCGGCAGCTCCTGC
TGTATTAACCGCATCTATAGCAGTCACCAAGCTTAGTCCACCTGACGCCA
CTAATGAGACGGCCACGGCAATTAGCATTGATAATGTGGAAGAAAAGGCA
GAAGAGGTGGAGGACAAGCACGAAGAGGAGGTCGTAGCCACCACCACAAT
CGCCACGGAGCTGAACGAAAATGAGAAGCGTTGGCTCGACGATTTCCTAT
CGGTGGGTGCGTATGACTTCGAGAAGAGTCAGGAGAAGGGGCAGCAACAG
GAGGAGGCCGGCCGGGAGCAGAAGGATCCCGAGGTGGAGGCTACTACCAT
ACCGACAGCATTATCAGCAAGCTTTCTAGACCAT

BO11558.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12163-RC 1053 CG12163-PC 1..1050 17..1066 5250 100 Plus
CG12163-RA 1845 CG12163-PA 1..527 17..543 2635 100 Plus
CG12163-RB 1428 CG12163-PB 1..108 17..124 540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12163-RC 1425 CG12163-RC 213..1264 15..1066 5260 100 Plus
CG12163-RA 2299 CG12163-RA 213..741 15..543 2645 100 Plus
CG12163-RB 1882 CG12163-RB 213..322 15..124 550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5243313..5244256 1066..123 4720 100 Minus
3R 32079331 3R 5251424..5251533 124..15 550 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:22:29 has no hits.

BO11558.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:22 Download gff for BO11558.complete
Subject Subject Range Query Range Percent Splice Strand
CG12163-RA 1..527 17..543 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:34 Download gff for BO11558.complete
Subject Subject Range Query Range Percent Splice Strand
CG12163-RA 214..742 15..543 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:13 Download gff for BO11558.complete
Subject Subject Range Query Range Percent Splice Strand
CG12163-RC 215..1264 17..1068 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:22 Download gff for BO11558.complete
Subject Subject Range Query Range Percent Splice Strand
CG12163-RA 214..742 15..543 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:31 Download gff for BO11558.complete
Subject Subject Range Query Range Percent Splice Strand
CG12163-RC 215..1264 17..1068 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:31 Download gff for BO11558.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5243310..5244254 125..1068 99 <- Minus
3R 5251424..5251531 17..124 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:13 Download gff for BO11558.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1069032..1069976 125..1068 99 <- Minus
arm_3R 1077146..1077253 17..124 100   Minus

BO11558.pep Sequence

Translation from 16 to 1084

> BO11558.pep
MRLFAAATVALVLLLGQAAGEELAEERAGQAQGDAESTESSETTTDQAVS
EPPITLVHVLNPGEREYLSPNLIGVQNIAMTFLPLSMNFVNIIDAFREIT
AGVRYEILLNALDTKAIQPAEADIVCRLVILEKPWLRTQWGDKHRELVTS
NCTDPAVNSVAGDPAEKARLLNEKYVSNSIFNGGQRKELSDAEMANLESQ
ILTNLGPMRRKVSLTKTASAAPVRAPSPAAPSPAEAAPLDSAAPAVLTAS
IAVTKLSPPDATNETATAISIDNVEEKAEEVEDKHEEEVVATTTIATELN
ENEKRWLDDFLSVGAYDFEKSQEKGQQQEEAGREQKDPEVEATTIPTALS
ASFLDH

BO11558.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12163-PC 350 CG12163-PC 1..350 1..350 1746 100 Plus
CG12163-PA 614 CG12163-PA 1..179 1..179 888 98.9 Plus
CG12163-PB 475 CG12163-PB 1..138 1..157 184 37.6 Plus