Clone Sequence Records
BO11566.5prime Sequence
224 bp (223 high quality bases) assembled on 2006-04-19
> BO11566.5prime
GAAGTTATCAGTCGACATGCGTCTAACTAACGTTTTGTTCAAAAAGGTGA
AGAGCAAGCGCATCATGGTCGTACTGGAAAGTGTGGTCAGTGGACATCAG
TTTAATGCTTTTCGCGATCGCTTGGCCGACAAATTGGAGATAATACGCTT
CGATCCGTACATTCAACAGGAAAGCCTTTATCGTGAACGCAAGAAAATCC
GCAGCGCCGCAAGCTTTCTAGACC
BO11566.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3712-PA | 195 | mRpL33-RA | 1..192 | 17..208 | 960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL33-RA | 349 | CG3712-RA | 101..292 | 17..208 | 960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4321931..4322034 | 161..58 | 520 | 100 | Minus |
X | 23542271 | X | 4321821..4321867 | 208..162 | 235 | 100 | Minus |
X | 23542271 | X | 4322090..4322131 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:58:20 has no hits.
BO11566.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:10 Download gff for
BO11566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3712-PA | 1..195 | 17..212 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:35:15 Download gff for
BO11566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3712-PA | 1..195 | 17..212 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:51:20 Download gff for
BO11566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL33-RA | 88..296 | 5..213 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:16:38 Download gff for
BO11566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL33-RA | 88..296 | 5..213 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:16:38 Download gff for
BO11566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4321817..4321867 | 162..213 | 96 | <- | Minus |
X | 4321931..4322034 | 58..161 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:51:20 Download gff for
BO11566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4215850..4215900 | 162..213 | 96 | <- | Minus |
arm_X | 4215964..4216067 | 58..161 | 100 | <- | Minus |
BO11566.3prime Sequence
224 bp (223 high quality bases) assembled on 2006-04-19
> BO11566.3prime
ATGGTCTAGAAAGCTTGCGGCGCTGCGGATTTTCTTGCGTTCACGATAAA
GGCTTTCCTGTTGAATGTACGGATCGAAGCGTATTATCTCCAATTTGTCG
GCCAAGCGATCGCGAAAAGCATTAAACTGATGTCCACTGACCACACTTTC
CAGTACGACCATGATGCGCTTGCTCTTCACCTTTTTGAACAAAACGTTAG
TTAGACGCATGTCGACTGATAACT
BO11566.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3712-PA | 195 | mRpL33-RA | 1..192 | 210..19 | 960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:31:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL33-RA | 349 | CG3712-RA | 101..292 | 210..19 | 960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:30:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4321931..4322034 | 66..169 | 520 | 100 | Plus |
X | 23542271 | X | 4321821..4321867 | 19..65 | 235 | 100 | Plus |
X | 23542271 | X | 4322090..4322131 | 169..210 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:31:00 has no hits.
BO11566.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:09 Download gff for
BO11566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3712-PA | 1..195 | 15..210 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:35:13 Download gff for
BO11566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3712-PA | 1..195 | 15..210 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:55:43 Download gff for
BO11566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL33-RA | 88..296 | 14..222 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:04:19 Download gff for
BO11566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL33-RA | 88..296 | 14..222 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:04:19 Download gff for
BO11566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4321817..4321867 | 14..65 | 96 | <- | Plus |
X | 4321931..4322034 | 66..169 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:55:43 Download gff for
BO11566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4215850..4215900 | 14..65 | 96 | <- | Plus |
arm_X | 4215964..4216067 | 66..169 | 100 | <- | Plus |
BO11566.complete Sequence
226 bp assembled on 2006-10-10
GenBank Submission: FJ632106
> BO11566.complete
GAAGTTATCAGTCGACATGCGTCTAACTAACGTTTTGTTCAAAAAGGTGA
AGAGCAAGCGCATCATGGTCGTACTGGAAAGTGTGGTCAGTGGACATCAG
TTTAATGCTTTTCGCGATCGCTTGGCCGACAAATTGGAGATAATACGCTT
CGATCCGTACATTCAACAGGAAAGCCTTTATCGTGAACGCAAGAAAATCC
GCAGCGCCGCAAGCTTTCTAGACCAT
BO11566.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:34:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL33-RA | 195 | CG3712-PA | 1..192 | 17..208 | 960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL33-RA | 349 | CG3712-RA | 101..292 | 17..208 | 960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4321931..4322034 | 161..58 | 520 | 100 | Minus |
X | 23542271 | X | 4321821..4321867 | 208..162 | 235 | 100 | Minus |
X | 23542271 | X | 4322090..4322131 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:34:33 has no hits.
BO11566.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:25 Download gff for
BO11566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL33-RA | 1..195 | 17..212 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:30 Download gff for
BO11566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL33-RA | 58..266 | 5..213 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:28 Download gff for
BO11566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL33-RA | 101..292 | 17..210 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:25 Download gff for
BO11566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL33-RA | 58..266 | 5..213 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:23 Download gff for
BO11566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL33-RA | 101..292 | 17..210 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:23 Download gff for
BO11566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4321819..4321867 | 162..210 | 95 | <- | Minus |
X | 4321931..4322034 | 58..161 | 100 | <- | Minus |
X | 4322091..4322131 | 17..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:28 Download gff for
BO11566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4215852..4215900 | 162..210 | 95 | <- | Minus |
arm_X | 4215964..4216067 | 58..161 | 100 | <- | Minus |
arm_X | 4216124..4216164 | 17..57 | 100 | | Minus |
BO11566.pep Sequence
Translation from 16 to 226
> BO11566.pep
MRLTNVLFKKVKSKRIMVVLESVVSGHQFNAFRDRLADKLEIIRFDPYIQ
QESLYRERKKIRSAASFLDH
BO11566.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL33-PA | 64 | CG3712-PA | 1..64 | 1..64 | 314 | 100 | Plus |