Clone Sequence Records
BO11568.3prime Sequence
236 bp (235 high quality bases) assembled on 2006-04-19
> BO11568.3prime
ATGGTCTAGAAAGCTTGCGGATCCCACGATGATGTTGTTAATGGGAATGT
GAATCAGCTTGACGAAGAAGCCGATGAAGCCCATGATGGCGAAGCCCACG
GCGGTGGCGATGGCGATTTTCTGGAACTCCTTGCGGTCGGGTTTTGTGCA
GCGCTTCACCAGGCGGATTGAGTCCTTGGCGAAGGCGCGTCCGGGTTCGG
CGAATTTGACAACCTTGTCCATGTCGACTGATAACT
BO11568.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8860-PA | 207 | CG8860-RA | 1..204 | 222..19 | 1020 | 100 | Minus |
CG14214-PA | 207 | CG14214-RA | 1..200 | 222..23 | 475 | 89.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8860-RA | 420 | CG8860-RA | 110..313 | 222..19 | 1020 | 100 | Minus |
Sec61gamma-RC | 537 | CG14214-RC | 26..228 | 225..23 | 700 | 89.7 | Minus |
Sec61gamma-RB | 792 | CG14214-RB | 158..360 | 225..23 | 700 | 89.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12179590..12179793 | 19..222 | 1020 | 100 | Plus |
X | 23542271 | X | 19643884..19644086 | 225..23 | 700 | 89.7 | Minus |
2R | 25286936 | 2R | 20512745..20512877 | 24..156 | 200 | 76.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:49:13 has no hits.
BO11568.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:13 Download gff for
BO11568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-PA | 1..207 | 18..222 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:35:19 Download gff for
BO11568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-PA | 1..207 | 18..222 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:22:42 Download gff for
BO11568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-RA | 110..321 | 13..222 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:34:54 Download gff for
BO11568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-RA | 110..321 | 13..222 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:34:54 Download gff for
BO11568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12179582..12179791 | 13..220 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:22:42 Download gff for
BO11568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8067087..8067296 | 13..220 | 98 | <- | Plus |
BO11568.5prime Sequence
236 bp (235 high quality bases) assembled on 2006-04-19
> BO11568.5prime
GAAGTTATCAGTCGACATGGACAAGGTTGTCAAATTCGCCGAACCCGGAC
GCGCCTTCGCCAAGGACTCAATCCGCCTGGTGAAGCGCTGCACAAAACCC
GACCGCAAGGAGTTCCAGAAAATCGCCATCGCCACCGCCGTGGGCTTCGC
CATCATGGGCTTCATCGGCTTCTTCGTCAAGCTGATTCACATTCCCATTA
ACAACATCATCGTGGGATCCGCAAGCTTTCTAGACC
BO11568.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8860-PA | 207 | CG8860-RA | 1..204 | 17..220 | 1020 | 100 | Plus |
CG14214-PA | 207 | CG14214-RA | 1..200 | 17..216 | 475 | 89.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8860-RA | 420 | CG8860-RA | 110..313 | 17..220 | 1020 | 100 | Plus |
Sec61gamma-RC | 537 | CG14214-RC | 26..228 | 14..216 | 700 | 89.7 | Plus |
Sec61gamma-RB | 792 | CG14214-RB | 158..360 | 14..216 | 700 | 89.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12179590..12179793 | 220..17 | 1020 | 100 | Minus |
X | 23542271 | X | 19643884..19644086 | 14..216 | 700 | 89.7 | Plus |
2R | 25286936 | 2R | 20512745..20512877 | 215..83 | 200 | 76.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:55:49 has no hits.
BO11568.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:14 Download gff for
BO11568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-PA | 1..207 | 17..221 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:35:20 Download gff for
BO11568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-PA | 1..207 | 17..221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:17:35 Download gff for
BO11568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-RA | 110..321 | 17..226 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:30:29 Download gff for
BO11568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-RA | 110..321 | 17..226 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:30:29 Download gff for
BO11568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12179582..12179791 | 19..226 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:17:35 Download gff for
BO11568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8067087..8067296 | 19..226 | 98 | <- | Minus |
BO11568.complete Sequence
238 bp assembled on 2006-10-11
GenBank Submission: FJ632107
> BO11568.complete
GAAGTTATCAGTCGACATGGACAAGGTTGTCAAATTCGCCGAACCCGGAC
GCGCCTTCGCCAAGGACTCAATCCGCCTGGTGAAGCGCTGCACAAAACCC
GACCGCAAGGAGTTCCAGAAAATCGCCATCGCCACCGCCGTGGGCTTCGC
CATCATGGGCTTCATCGGCTTCTTCGTCAAGCTGATTCACATTCCCATTA
ACAACATCATCGTGGGATCCGCAAGCTTTCTAGACCAT
BO11568.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8860-RA | 207 | CG8860-PA | 1..204 | 17..220 | 1020 | 100 | Plus |
Sec61gamma-RC | 207 | CG14214-PC | 1..200 | 17..216 | 685 | 89.5 | Plus |
Sec61gamma-RB | 207 | CG14214-PB | 1..200 | 17..216 | 685 | 89.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8860-RA | 420 | CG8860-RA | 110..313 | 17..220 | 1020 | 100 | Plus |
Sec61gamma-RC | 537 | CG14214-RC | 26..228 | 14..216 | 700 | 89.7 | Plus |
Sec61gamma-RB | 792 | CG14214-RB | 158..360 | 14..216 | 700 | 89.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12179590..12179793 | 220..17 | 1020 | 100 | Minus |
X | 23542271 | X | 19643884..19644086 | 14..216 | 700 | 89.7 | Plus |
2R | 25286936 | 2R | 20512745..20512877 | 215..83 | 200 | 76.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:31:58 has no hits.
BO11568.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:42 Download gff for
BO11568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-RA | 1..207 | 17..221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:12 Download gff for
BO11568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-RA | 46..257 | 17..226 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:43 Download gff for
BO11568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-RA | 110..313 | 17..222 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:43 Download gff for
BO11568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-RA | 46..257 | 17..226 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:46 Download gff for
BO11568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8860-RA | 110..313 | 17..222 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:46 Download gff for
BO11568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12179588..12179793 | 17..222 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:43 Download gff for
BO11568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8067093..8067298 | 17..222 | 99 | | Minus |
BO11568.pep Sequence
Translation from 16 to 238
> BO11568.pep
MDKVVKFAEPGRAFAKDSIRLVKRCTKPDRKEFQKIAIATAVGFAIMGFI
GFFVKLIHIPINNIIVGSASFLDH
BO11568.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8860-PA | 68 | CG8860-PA | 1..68 | 1..68 | 343 | 100 | Plus |
Sec61gamma-PC | 68 | CG14214-PC | 1..68 | 1..68 | 339 | 98.5 | Plus |
Sec61gamma-PB | 68 | CG14214-PB | 1..68 | 1..68 | 339 | 98.5 | Plus |
Sec61gamma-PA | 68 | CG14214-PA | 1..68 | 1..68 | 339 | 98.5 | Plus |
CG13426-PA | 105 | CG13426-PA | 48..104 | 10..66 | 196 | 64.9 | Plus |