Clone BO11569 Report

Search the DGRC for BO11569

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:115
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG1678-RA
Protein status:BO11569.pep: validated full length
Sequenced Size:289

Clone Sequence Records

BO11569.3prime Sequence

287 bp (286 high quality bases) assembled on 2006-04-19

> BO11569.3prime
ATGGTCTAGAAAGCTTGCGGCGGACGCCTCACTGGAGGACTCGCTGGAGC
TCTCCTGGGAGGAAGAGTCTTCGGAGGAGGATGAGTTGCCACCTTGGGGA
GGTCCTTGTGGGAGTCCCTGGGGAGGTCCCTGAGGTATTCCCTGCGGCGG
CTGGAGTCCTCCAGAGCCCTGAAGTGGTCCCAGACCTCCCTGCGGAAGTC
CTGGAGGACGACGTCCTTGGACAGCAGCCAGAGCCACCATGGCGAGCACA
ACGATGAGGAAGATTACACGCATGTCGACTGATAACT

BO11569.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1678-PA 258 CG1678-RA 1..255 273..19 1275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1678-RB 434 CG1678-RB 56..310 273..19 1275 100 Minus
CG1678-RA 392 CG1678-RA 56..310 273..19 1275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21402463..21402717 19..273 1275 100 Plus
Blast to na_te.dros performed on 2015-02-03 17:28:24 has no hits.

BO11569.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:15 Download gff for BO11569.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1678-PA 1..258 18..273 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:35:21 Download gff for BO11569.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1678-PA 1..258 18..273 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:35:16 Download gff for BO11569.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1678-RA 17..276 19..278 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:02:04 Download gff for BO11569.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1678-RA 51..310 19..278 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:02:04 Download gff for BO11569.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21402463..21402722 19..278 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:35:16 Download gff for BO11569.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21273490..21273749 19..278 99   Plus

BO11569.5prime Sequence

287 bp (286 high quality bases) assembled on 2006-04-19

> BO11569.5prime
GAAGTTATCAGTCGACATGCGTGTAATCTTCCTCATCGTTGTGCTCGCCA
TGGTGGCTCTGGCTGCTGTCCAAGGACGTCGTCCTCCAGGACTTCCGCAG
GGAGGTCTGGGACCACTTCAGGGCTCTGGAGGACTCCAGCCGCCGCAGGG
AATACCTCAGGGACCTCCCCAGGGACTCCCACAAGGACCTCCCCAAGGTG
GCAACTCATCCTCCTCCGAAGACTCTTCCTCCCAGGAGAGCTCCAGCGAG
TCCTCCAGTGAGGCGTCCGCCGCAAGCTTTCTAGACC

BO11569.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1678-PA 258 CG1678-RA 1..255 17..271 1275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1678-RB 434 CG1678-RB 56..310 17..271 1275 100 Plus
CG1678-RA 392 CG1678-RA 56..310 17..271 1275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21402463..21402717 271..17 1275 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:52:52 has no hits.

BO11569.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:15 Download gff for BO11569.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1678-PA 1..258 17..272 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:35:23 Download gff for BO11569.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1678-PA 1..258 17..272 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:39:16 Download gff for BO11569.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1678-RA 17..276 12..271 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:19 Download gff for BO11569.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1678-RA 51..310 12..271 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:19 Download gff for BO11569.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21402463..21402722 12..271 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:39:16 Download gff for BO11569.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21273490..21273749 12..271 99   Minus

BO11569.complete Sequence

289 bp assembled on 2006-10-11

GenBank Submission: FJ632108

> BO11569.complete
GAAGTTATCAGTCGACATGCGTGTAATCTTCCTCATCGTTGTGCTCGCCA
TGGTGGCTCTGGCTGCTGTCCAAGGACGTCGTCCTCCAGGACTTCCGCAG
GGAGGTCTGGGACCACTTCAGGGCTCTGGAGGACTCCAGCCGCCGCAGGG
AATACCTCAGGGACCTCCCCAGGGACTCCCACAAGGACCTCCCCAAGGTG
GCAACTCATCCTCCTCCGAAGACTCTTCCTCCCAGGAGAGCTCCAGCGAG
TCCTCCAGTGAGGCGTCCGCCGCAAGCTTTCTAGACCAT

BO11569.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1678-RB 258 CG1678-PB 1..255 17..271 1275 100 Plus
CG1678-RA 258 CG1678-PA 1..255 17..271 1275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1678-RB 434 CG1678-RB 56..310 17..271 1275 100 Plus
CG1678-RA 392 CG1678-RA 56..310 17..271 1275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21402463..21402717 271..17 1275 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:44:48 has no hits.

BO11569.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:59 Download gff for BO11569.complete
Subject Subject Range Query Range Percent Splice Strand
CG1678-RA 1..258 17..272 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:40 Download gff for BO11569.complete
Subject Subject Range Query Range Percent Splice Strand
CG1678-RA 17..276 12..271 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:33 Download gff for BO11569.complete
Subject Subject Range Query Range Percent Splice Strand
CG1678-RA 22..276 17..273 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:59 Download gff for BO11569.complete
Subject Subject Range Query Range Percent Splice Strand
CG1678-RA 17..276 12..271 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:42 Download gff for BO11569.complete
Subject Subject Range Query Range Percent Splice Strand
CG1678-RA 56..310 17..273 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:42 Download gff for BO11569.complete
Subject Subject Range Query Range Percent Splice Strand
X 21402461..21402717 17..273 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:33 Download gff for BO11569.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21273488..21273744 17..273 99   Minus

BO11569.pep Sequence

Translation from 16 to 289

> BO11569.pep
MRVIFLIVVLAMVALAAVQGRRPPGLPQGGLGPLQGSGGLQPPQGIPQGP
PQGLPQGPPQGGNSSSSEDSSSQESSSESSSEASAASFLDH

BO11569.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1678-PB 85 CG1678-PB 1..85 1..85 429 100 Plus
CG1678-PA 85 CG1678-PA 1..85 1..85 429 100 Plus
CG13947-PA 119 CG13947-PA 1..116 1..87 141 38.5 Plus