Clone Sequence Records
BO11569.3prime Sequence
287 bp (286 high quality bases) assembled on 2006-04-19
> BO11569.3prime
ATGGTCTAGAAAGCTTGCGGCGGACGCCTCACTGGAGGACTCGCTGGAGC
TCTCCTGGGAGGAAGAGTCTTCGGAGGAGGATGAGTTGCCACCTTGGGGA
GGTCCTTGTGGGAGTCCCTGGGGAGGTCCCTGAGGTATTCCCTGCGGCGG
CTGGAGTCCTCCAGAGCCCTGAAGTGGTCCCAGACCTCCCTGCGGAAGTC
CTGGAGGACGACGTCCTTGGACAGCAGCCAGAGCCACCATGGCGAGCACA
ACGATGAGGAAGATTACACGCATGTCGACTGATAACT
BO11569.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1678-PA | 258 | CG1678-RA | 1..255 | 273..19 | 1275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1678-RB | 434 | CG1678-RB | 56..310 | 273..19 | 1275 | 100 | Minus |
CG1678-RA | 392 | CG1678-RA | 56..310 | 273..19 | 1275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:28:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21402463..21402717 | 19..273 | 1275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 17:28:24 has no hits.
BO11569.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:15 Download gff for
BO11569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-PA | 1..258 | 18..273 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:35:21 Download gff for
BO11569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-PA | 1..258 | 18..273 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:35:16 Download gff for
BO11569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-RA | 17..276 | 19..278 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:02:04 Download gff for
BO11569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-RA | 51..310 | 19..278 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:02:04 Download gff for
BO11569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21402463..21402722 | 19..278 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:35:16 Download gff for
BO11569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21273490..21273749 | 19..278 | 99 | | Plus |
BO11569.5prime Sequence
287 bp (286 high quality bases) assembled on 2006-04-19
> BO11569.5prime
GAAGTTATCAGTCGACATGCGTGTAATCTTCCTCATCGTTGTGCTCGCCA
TGGTGGCTCTGGCTGCTGTCCAAGGACGTCGTCCTCCAGGACTTCCGCAG
GGAGGTCTGGGACCACTTCAGGGCTCTGGAGGACTCCAGCCGCCGCAGGG
AATACCTCAGGGACCTCCCCAGGGACTCCCACAAGGACCTCCCCAAGGTG
GCAACTCATCCTCCTCCGAAGACTCTTCCTCCCAGGAGAGCTCCAGCGAG
TCCTCCAGTGAGGCGTCCGCCGCAAGCTTTCTAGACC
BO11569.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1678-PA | 258 | CG1678-RA | 1..255 | 17..271 | 1275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1678-RB | 434 | CG1678-RB | 56..310 | 17..271 | 1275 | 100 | Plus |
CG1678-RA | 392 | CG1678-RA | 56..310 | 17..271 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21402463..21402717 | 271..17 | 1275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:52:52 has no hits.
BO11569.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:15 Download gff for
BO11569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-PA | 1..258 | 17..272 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:35:23 Download gff for
BO11569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-PA | 1..258 | 17..272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:39:16 Download gff for
BO11569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-RA | 17..276 | 12..271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:19 Download gff for
BO11569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-RA | 51..310 | 12..271 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:19 Download gff for
BO11569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21402463..21402722 | 12..271 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:39:16 Download gff for
BO11569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21273490..21273749 | 12..271 | 99 | | Minus |
BO11569.complete Sequence
289 bp assembled on 2006-10-11
GenBank Submission: FJ632108
> BO11569.complete
GAAGTTATCAGTCGACATGCGTGTAATCTTCCTCATCGTTGTGCTCGCCA
TGGTGGCTCTGGCTGCTGTCCAAGGACGTCGTCCTCCAGGACTTCCGCAG
GGAGGTCTGGGACCACTTCAGGGCTCTGGAGGACTCCAGCCGCCGCAGGG
AATACCTCAGGGACCTCCCCAGGGACTCCCACAAGGACCTCCCCAAGGTG
GCAACTCATCCTCCTCCGAAGACTCTTCCTCCCAGGAGAGCTCCAGCGAG
TCCTCCAGTGAGGCGTCCGCCGCAAGCTTTCTAGACCAT
BO11569.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1678-RB | 258 | CG1678-PB | 1..255 | 17..271 | 1275 | 100 | Plus |
CG1678-RA | 258 | CG1678-PA | 1..255 | 17..271 | 1275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:44:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1678-RB | 434 | CG1678-RB | 56..310 | 17..271 | 1275 | 100 | Plus |
CG1678-RA | 392 | CG1678-RA | 56..310 | 17..271 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:44:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21402463..21402717 | 271..17 | 1275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:44:48 has no hits.
BO11569.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:59 Download gff for
BO11569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-RA | 1..258 | 17..272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:40 Download gff for
BO11569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-RA | 17..276 | 12..271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:33 Download gff for
BO11569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-RA | 22..276 | 17..273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:59 Download gff for
BO11569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-RA | 17..276 | 12..271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:42 Download gff for
BO11569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1678-RA | 56..310 | 17..273 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:42 Download gff for
BO11569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21402461..21402717 | 17..273 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:33 Download gff for
BO11569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21273488..21273744 | 17..273 | 99 | | Minus |
BO11569.pep Sequence
Translation from 16 to 289
> BO11569.pep
MRVIFLIVVLAMVALAAVQGRRPPGLPQGGLGPLQGSGGLQPPQGIPQGP
PQGLPQGPPQGGNSSSSEDSSSQESSSESSSEASAASFLDH
BO11569.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1678-PB | 85 | CG1678-PB | 1..85 | 1..85 | 429 | 100 | Plus |
CG1678-PA | 85 | CG1678-PA | 1..85 | 1..85 | 429 | 100 | Plus |
CG13947-PA | 119 | CG13947-PA | 1..116 | 1..87 | 141 | 38.5 | Plus |