Clone BO11576 Report

Search the DGRC for BO11576

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:115
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptEig71Ef-RA
Protein status:BO11576.pep: validated full length
Sequenced Size:328

Clone Sequence Records

BO11576.5prime Sequence

326 bp (325 high quality bases) assembled on 2006-04-19

> BO11576.5prime
GAAGTTATCAGTCGACATGCAATTGACAAGTATTATCTGCGTCATCTTGT
TCCTTGGCTGTGTACTTATTAATGGACAAAGTCCCGACTGCCGAAAGTTA
AGGGACACTTGCAATCCTTGCATCCGAAGACTCAATAATCCCATCAATAA
TGTGGAGTTCATGAACGAGGGATGCCGTGAGAAAGTCCGTGGCAGATACA
TCTGGAAGAATCAGACTCGCTGCGATCTTCAAGTGATCGCTTGCAGTGCT
CACAAGAGGAAACTGGATTGCTTGGTAATAGCCGAGCTTGCTGGGATGCC
AAGGCGAACTGCAAGCTTTCTAGACC

BO11576.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7599-PA 297 Eig71Ef-RA 1..294 17..310 1470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
Eig71Ef-RA 420 CG7599-RA 34..327 17..310 1470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15657126..15657357 248..17 1160 100 Minus
3L 28110227 3L 15656748..15656810 310..248 315 100 Minus
Blast to na_te.dros performed 2015-02-12 05:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 5149..5235 207..118 127 64.8 Minus

BO11576.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:28 Download gff for BO11576.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7599-PA 1..297 17..311 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:35:39 Download gff for BO11576.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7599-PA 1..297 17..311 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:55:01 Download gff for BO11576.5prime
Subject Subject Range Query Range Percent Splice Strand
Eig71Ef-RA 34..327 17..310 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:26:33 Download gff for BO11576.5prime
Subject Subject Range Query Range Percent Splice Strand
Eig71Ef-RA 34..327 17..310 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:26:33 Download gff for BO11576.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15656748..15656809 249..310 100 <- Minus
3L 15657126..15657357 17..248 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:55:01 Download gff for BO11576.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15649848..15649909 249..310 100 <- Minus
arm_3L 15650226..15650457 17..248 100 -> Minus

BO11576.3prime Sequence

326 bp (325 high quality bases) assembled on 2006-04-19

> BO11576.3prime
ATGGTCTAGAAAGCTTGCAGTTCGCCTTGGCATCCCAGCAAGCTCGGCTA
TTACCAAGCAATCCAGTTTCCTCTTGTGAGCACTGCAAGCGATCACTTGA
AGATCGCAGCGAGTCTGATTCTTCCAGATGTATCTGCCACGGACTTTCTC
ACGGCATCCCTCGTTCATGAACTCCACATTATTGATGGGATTATTGAGTC
TTCGGATGCAAGGATTGCAAGTGTCCCTTAACTTTCGGCAGTCGGGACTT
TGTCCATTAATAAGTACACAGCCAAGGAACAAGATGACGCAGATAATACT
TGTCAATTGCATGTCGACTGATAACT

BO11576.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7599-PA 297 Eig71Ef-RA 1..294 312..19 1470 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
Eig71Ef-RA 420 CG7599-RA 34..327 312..19 1470 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15657126..15657357 81..312 1160 100 Plus
3L 28110227 3L 15656748..15656810 19..81 315 100 Plus
Blast to na_te.dros performed 2015-02-12 00:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 5149..5235 122..211 127 64.8 Plus

BO11576.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:27 Download gff for BO11576.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7599-PA 1..297 18..312 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:35:38 Download gff for BO11576.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7599-PA 1..297 18..312 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:53:23 Download gff for BO11576.3prime
Subject Subject Range Query Range Percent Splice Strand
Eig71Ef-RA 34..327 19..312 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:07:34 Download gff for BO11576.3prime
Subject Subject Range Query Range Percent Splice Strand
Eig71Ef-RA 34..327 19..312 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:07:34 Download gff for BO11576.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15656748..15656809 19..80 100 <- Plus
3L 15657126..15657357 81..312 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:53:23 Download gff for BO11576.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15649848..15649909 19..80 100 <- Plus
arm_3L 15650226..15650457 81..312 100   Plus

BO11576.complete Sequence

328 bp assembled on 2006-10-11

GenBank Submission: FJ632109

> BO11576.complete
GAAGTTATCAGTCGACATGCAATTGACAAGTATTATCTGCGTCATCTTGT
TCCTTGGCTGTGTACTTATTAATGGACAAAGTCCCGACTGCCGAAAGTTA
AGGGACACTTGCAATCCTTGCATCCGAAGACTCAATAATCCCATCAATAA
TGTGGAGTTCATGAACGAGGGATGCCGTGAGAAAGTCCGTGGCAGATACA
TCTGGAAGAATCAGACTCGCTGCGATCTTCAAGTGATCGCTTGCAGTGCT
CACAAGAGGAAACTGGATTGCTTGGTAATAGCCGAGCTTGCTGGGATGCC
AAGGCGAACTGCAAGCTTTCTAGACCAT

BO11576.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
Eig71Ef-RA 297 CG7599-PA 1..294 17..310 1470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
Eig71Ef-RA 420 CG7599-RA 34..327 17..310 1470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15657126..15657357 248..17 1160 100 Minus
3L 28110227 3L 15656748..15656810 310..248 315 100 Minus
Blast to na_te.dros performed 2014-11-27 11:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 5149..5235 207..118 127 64.8 Minus

BO11576.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:50 Download gff for BO11576.complete
Subject Subject Range Query Range Percent Splice Strand
Eig71Ef-RA 1..297 17..311 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:08 Download gff for BO11576.complete
Subject Subject Range Query Range Percent Splice Strand
Eig71Ef-RA 45..338 17..310 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:20:47 Download gff for BO11576.complete
Subject Subject Range Query Range Percent Splice Strand
Eig71Ef-RA 34..327 17..312 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:50 Download gff for BO11576.complete
Subject Subject Range Query Range Percent Splice Strand
Eig71Ef-RA 45..338 17..310 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:02 Download gff for BO11576.complete
Subject Subject Range Query Range Percent Splice Strand
Eig71Ef-RA 34..327 17..312 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:02 Download gff for BO11576.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15656746..15656809 249..312 96 <- Minus
3L 15657126..15657357 17..248 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:20:47 Download gff for BO11576.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15649846..15649909 249..312 96 <- Minus
arm_3L 15650226..15650457 17..248 100   Minus

BO11576.pep Sequence

Translation from 16 to 328

> BO11576.pep
MQLTSIICVILFLGCVLINGQSPDCRKLRDTCNPCIRRLNNPINNVEFMN
EGCREKVRGRYIWKNQTRCDLQVIACSAHKRKLDCLVIAELAGMPRRTAS
FLDH

BO11576.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
Eig71Ef-PA 98 CG7599-PA 1..98 1..98 532 100 Plus
Eig71Eh-PB 101 CG7594-PB 1..96 1..98 318 54.1 Plus
Eig71Ej-PA 98 CG7588-PA 1..96 1..96 272 47.9 Plus
Eig71Ed-PA 99 CG7350-PA 1..97 1..96 182 37.1 Plus
Eig71Ea-PA 100 CG16931-PA 1..98 1..97 170 33.7 Plus