Clone BO11577 Report

Search the DGRC for BO11577

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:115
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG17738-RA
Protein status:BO11577.pep: validated full length
Sequenced Size:364

Clone Sequence Records

BO11577.5prime Sequence

362 bp (361 high quality bases) assembled on 2006-04-19

> BO11577.5prime
GAAGTTATCAGTCGACATGCGTTCCGCGATTTTGTTCGGCCTTATTGTTT
GCCTGGCTTTTAGCCTTGTCTTGTCCCTGGAGGAGTCCATCAATCAATCC
AATGATCTGTCGTCGGTGGAAAAGGATATTGGCCAGGCTGTGGAGTCCGA
TGTGCGTGCTAAGCGGCAGTTTGGCTTTGGTGGTCCCTTTGGCGGATTTG
GAGGACCTTTCGGTGGATACGGCGGCTACGGAGGACTTGGAGGCTTTGGT
TATGGACGTCCCTTCTATGGAGGCTATGGCCGTCCCTTCTATGGAGGTTT
CGGAAGACCCTTCTACGGAGGCGGCTTCGGAGGTCCTTTCTTTGGTGCAA
GCTTTCTAGACC

BO11577.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17738-PA 333 CG17738-RA 1..330 17..346 1650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17738-RA 411 CG17738-RA 31..360 17..346 1650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12270920..12271249 17..346 1650 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:10:59 has no hits.

BO11577.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:30 Download gff for BO11577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17738-PA 1..333 17..350 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:35:42 Download gff for BO11577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17738-PA 1..333 17..350 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:16:06 Download gff for BO11577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17738-RA 24..371 10..358 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:19:04 Download gff for BO11577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17738-RA 24..371 10..358 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:19:04 Download gff for BO11577.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12270913..12271260 10..358 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:16:06 Download gff for BO11577.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8096635..8096982 10..358 97   Plus

BO11577.3prime Sequence

362 bp (361 high quality bases) assembled on 2006-04-19

> BO11577.3prime
ATGGTCTAGAAAGCTTGCACCAAAGAAAGGACCTCCGAAGCCGCCTCCGT
AGAAGGGTCTTCCGAAACCTCCATAGAAGGGACGGCCATAGCCTCCATAG
AAGGGACGTCCATAACCAAAGCCTCCAAGTCCTCCGTAGCCGCCGTATCC
ACCGAAAGGTCCTCCAAATCCGCCAAAGGGACCACCAAAGCCAAACTGCC
GCTTAGCACGCACATCGGACTCCACAGCCTGGCCAATATCCTTTTCCACC
GACGACAGATCATTGGATTGATTGATGGACTCCTCCAGGGACAAGACAAG
GCTAAAAGCCAGGCAAACAATAAGGCCGAACAAAATCGCGGAACGCATGT
CGACTGATAACT

BO11577.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17738-PA 333 CG17738-RA 1..330 348..19 1650 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17738-RA 411 CG17738-RA 31..360 348..19 1650 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12270920..12271249 348..19 1650 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:40:55 has no hits.

BO11577.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:29 Download gff for BO11577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17738-PA 1..333 15..348 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:35:41 Download gff for BO11577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17738-PA 1..333 15..348 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:27:33 Download gff for BO11577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17738-RA 24..371 7..355 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:46:40 Download gff for BO11577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17738-RA 24..371 7..355 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:46:40 Download gff for BO11577.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12270913..12271260 7..355 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:27:33 Download gff for BO11577.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8096635..8096982 7..355 97   Minus

BO11577.complete Sequence

364 bp assembled on 2006-10-11

GenBank Submission: FJ632110

> BO11577.complete
GAAGTTATCAGTCGACATGCGTTCCGCGATTTTGTTCGGCCTTATTGTTT
GCCTGGCTTTTAGCCTTGTCTTGTCCCTGGAGGAGTCCATCAATCAATCC
AATGATCTGTCGTCGGTGGAAAAGGATATTGGCCAGGCTGTGGAGTCCGA
TGTGCGTGCTAAGCGGCAGTTTGGCTTTGGTGGTCCCTTTGGCGGATTTG
GAGGACCTTTCGGTGGATACGGCGGCTACGGAGGACTTGGAGGCTTTGGT
TATGGACGTCCCTTCTATGGAGGCTATGGCCGTCCCTTCTATGGAGGTTT
CGGAAGACCCTTCTACGGAGGCGGCTTCGGAGGTCCTTTCTTTGGTGCAA
GCTTTCTAGACCAT

BO11577.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG17738-RA 333 CG17738-PA 1..330 17..346 1650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17738-RA 411 CG17738-RA 31..360 17..346 1650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12270920..12271249 17..346 1650 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:39:05 has no hits.

BO11577.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:46 Download gff for BO11577.complete
Subject Subject Range Query Range Percent Splice Strand
CG17738-RA 1..333 17..350 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:49 Download gff for BO11577.complete
Subject Subject Range Query Range Percent Splice Strand
CG17738-RA 24..371 10..358 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:58 Download gff for BO11577.complete
Subject Subject Range Query Range Percent Splice Strand
CG17738-RA 31..360 17..348 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:46 Download gff for BO11577.complete
Subject Subject Range Query Range Percent Splice Strand
CG17738-RA 1..333 17..350 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:41 Download gff for BO11577.complete
Subject Subject Range Query Range Percent Splice Strand
CG17738-RA 31..360 17..348 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:41 Download gff for BO11577.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12270920..12271249 17..348 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:58 Download gff for BO11577.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8096642..8096971 17..348 99   Plus

BO11577.pep Sequence

Translation from 16 to 364

> BO11577.pep
MRSAILFGLIVCLAFSLVLSLEESINQSNDLSSVEKDIGQAVESDVRAKR
QFGFGGPFGGFGGPFGGYGGYGGLGGFGYGRPFYGGYGRPFYGGFGRPFY
GGGFGGPFFGASFLDH

BO11577.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17738-PA 110 CG17738-PA 1..110 1..110 602 100 Plus
CG9757-PB 127 CG9757-PB 5..127 11..110 178 40.5 Plus
CG9757-PA 127 CG9757-PA 5..127 11..110 178 40.5 Plus
CG9269-PA 146 CG9269-PA 1..117 1..108 164 35.5 Plus
CG7294-PA 127 CG7294-PA 14..73 46..110 159 60.6 Plus