Clone Sequence Records
BO11577.5prime Sequence
362 bp (361 high quality bases) assembled on 2006-04-19
> BO11577.5prime
GAAGTTATCAGTCGACATGCGTTCCGCGATTTTGTTCGGCCTTATTGTTT
GCCTGGCTTTTAGCCTTGTCTTGTCCCTGGAGGAGTCCATCAATCAATCC
AATGATCTGTCGTCGGTGGAAAAGGATATTGGCCAGGCTGTGGAGTCCGA
TGTGCGTGCTAAGCGGCAGTTTGGCTTTGGTGGTCCCTTTGGCGGATTTG
GAGGACCTTTCGGTGGATACGGCGGCTACGGAGGACTTGGAGGCTTTGGT
TATGGACGTCCCTTCTATGGAGGCTATGGCCGTCCCTTCTATGGAGGTTT
CGGAAGACCCTTCTACGGAGGCGGCTTCGGAGGTCCTTTCTTTGGTGCAA
GCTTTCTAGACC
BO11577.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17738-PA | 333 | CG17738-RA | 1..330 | 17..346 | 1650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:10:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17738-RA | 411 | CG17738-RA | 31..360 | 17..346 | 1650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12270920..12271249 | 17..346 | 1650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:10:59 has no hits.
BO11577.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:30 Download gff for
BO11577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-PA | 1..333 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:35:42 Download gff for
BO11577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-PA | 1..333 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:16:06 Download gff for
BO11577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-RA | 24..371 | 10..358 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:19:04 Download gff for
BO11577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-RA | 24..371 | 10..358 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:19:04 Download gff for
BO11577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12270913..12271260 | 10..358 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:16:06 Download gff for
BO11577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8096635..8096982 | 10..358 | 97 | | Plus |
BO11577.3prime Sequence
362 bp (361 high quality bases) assembled on 2006-04-19
> BO11577.3prime
ATGGTCTAGAAAGCTTGCACCAAAGAAAGGACCTCCGAAGCCGCCTCCGT
AGAAGGGTCTTCCGAAACCTCCATAGAAGGGACGGCCATAGCCTCCATAG
AAGGGACGTCCATAACCAAAGCCTCCAAGTCCTCCGTAGCCGCCGTATCC
ACCGAAAGGTCCTCCAAATCCGCCAAAGGGACCACCAAAGCCAAACTGCC
GCTTAGCACGCACATCGGACTCCACAGCCTGGCCAATATCCTTTTCCACC
GACGACAGATCATTGGATTGATTGATGGACTCCTCCAGGGACAAGACAAG
GCTAAAAGCCAGGCAAACAATAAGGCCGAACAAAATCGCGGAACGCATGT
CGACTGATAACT
BO11577.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17738-PA | 333 | CG17738-RA | 1..330 | 348..19 | 1650 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17738-RA | 411 | CG17738-RA | 31..360 | 348..19 | 1650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12270920..12271249 | 348..19 | 1650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:40:55 has no hits.
BO11577.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:29 Download gff for
BO11577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-PA | 1..333 | 15..348 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:35:41 Download gff for
BO11577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-PA | 1..333 | 15..348 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:27:33 Download gff for
BO11577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-RA | 24..371 | 7..355 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:46:40 Download gff for
BO11577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-RA | 24..371 | 7..355 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:46:40 Download gff for
BO11577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12270913..12271260 | 7..355 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:27:33 Download gff for
BO11577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8096635..8096982 | 7..355 | 97 | | Minus |
BO11577.complete Sequence
364 bp assembled on 2006-10-11
GenBank Submission: FJ632110
> BO11577.complete
GAAGTTATCAGTCGACATGCGTTCCGCGATTTTGTTCGGCCTTATTGTTT
GCCTGGCTTTTAGCCTTGTCTTGTCCCTGGAGGAGTCCATCAATCAATCC
AATGATCTGTCGTCGGTGGAAAAGGATATTGGCCAGGCTGTGGAGTCCGA
TGTGCGTGCTAAGCGGCAGTTTGGCTTTGGTGGTCCCTTTGGCGGATTTG
GAGGACCTTTCGGTGGATACGGCGGCTACGGAGGACTTGGAGGCTTTGGT
TATGGACGTCCCTTCTATGGAGGCTATGGCCGTCCCTTCTATGGAGGTTT
CGGAAGACCCTTCTACGGAGGCGGCTTCGGAGGTCCTTTCTTTGGTGCAA
GCTTTCTAGACCAT
BO11577.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17738-RA | 333 | CG17738-PA | 1..330 | 17..346 | 1650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17738-RA | 411 | CG17738-RA | 31..360 | 17..346 | 1650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12270920..12271249 | 17..346 | 1650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:39:05 has no hits.
BO11577.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:46 Download gff for
BO11577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-RA | 1..333 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:49 Download gff for
BO11577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-RA | 24..371 | 10..358 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:58 Download gff for
BO11577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-RA | 31..360 | 17..348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:46 Download gff for
BO11577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-RA | 1..333 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:41 Download gff for
BO11577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17738-RA | 31..360 | 17..348 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:41 Download gff for
BO11577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12270920..12271249 | 17..348 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:58 Download gff for
BO11577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8096642..8096971 | 17..348 | 99 | | Plus |
BO11577.pep Sequence
Translation from 16 to 364
> BO11577.pep
MRSAILFGLIVCLAFSLVLSLEESINQSNDLSSVEKDIGQAVESDVRAKR
QFGFGGPFGGFGGPFGGYGGYGGLGGFGYGRPFYGGYGRPFYGGFGRPFY
GGGFGGPFFGASFLDH
BO11577.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17738-PA | 110 | CG17738-PA | 1..110 | 1..110 | 602 | 100 | Plus |
CG9757-PB | 127 | CG9757-PB | 5..127 | 11..110 | 178 | 40.5 | Plus |
CG9757-PA | 127 | CG9757-PA | 5..127 | 11..110 | 178 | 40.5 | Plus |
CG9269-PA | 146 | CG9269-PA | 1..117 | 1..108 | 164 | 35.5 | Plus |
CG7294-PA | 127 | CG7294-PA | 14..73 | 46..110 | 159 | 60.6 | Plus |