Clone Sequence Records
BO11579.3prime Sequence
314 bp (313 high quality bases) assembled on 2006-04-19
> BO11579.3prime
ATGGTCTAGAAAGCTTGCGGACAGGCGAACGCTCACTCCACCGCCGCACT
CGCCCTTGGACTTCTGCTCGAATGGATCGTCGGCATGCTGGCAGTTGTAG
TTGGCCATGACGCACGGGCTGCCAAAGGTGAGGAGGCGCTCCTTGCTGCT
GTTTTTGGCCTTGGCACAAACGGGCTCGTAGACTTCACCGCAGTTGTGCT
GGCAACTGTTGGTGGCCGGCTTCTTGGTGTCCTTGGCCGGAGTAGCCAGG
ACGAATGCCAGCAAGCACAGTGCTAGAAAAGCAAACAGAGCGAAACGCAT
GTCGACTGATAACT
BO11579.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8369-PA | 285 | CG8369-RA | 1..282 | 300..19 | 1410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8369-RA | 431 | CG8369-RA | 91..372 | 300..19 | 1410 | 100 | Minus |
CG8369-RC | 774 | CG8369-RC | 459..715 | 275..19 | 1285 | 100 | Minus |
CG8369-RB | 479 | CG8369-RB | 166..420 | 273..19 | 1275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:05:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8822466..8822666 | 275..75 | 1005 | 100 | Minus |
3R | 32079331 | 3R | 8822724..8822779 | 74..19 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 20:05:15 has no hits.
BO11579.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:33 Download gff for
BO11579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-PA | 1..285 | 18..300 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:35:47 Download gff for
BO11579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-PA | 1..285 | 18..300 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:36:01 Download gff for
BO11579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-RA | 78..372 | 19..314 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:48:44 Download gff for
BO11579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-RA | 78..372 | 19..314 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:48:44 Download gff for
BO11579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8822469..8822666 | 75..272 | 100 | -> | Minus |
3R | 8822724..8822779 | 19..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:36:01 Download gff for
BO11579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4648191..4648388 | 75..272 | 100 | -> | Minus |
arm_3R | 4648446..4648501 | 19..74 | 100 | | Minus |
BO11579.5prime Sequence
314 bp (313 high quality bases) assembled on 2006-04-19
> BO11579.5prime
GAAGTTATCAGTCGACATGCGTTTCGCTCTGTTTGCTTTTCTAGCACTGT
GCTTGCTGGCATTCGTCCTGGCTACTCCGGCCAAGGACACCAAGAAGCCG
GCCACCAACAGTTGCCAGCACAACTGCGGTGAAGTCTACGAGCCCGTTTG
TGCCAAGGCCAAAAACAGCAGCAAGGAGCGCCTCCTCACCTTTGGCAGCC
CGTGCGTCATGGCCAACTACAACTGCCAGCATGCCGACGATCCATTCGAG
CAGAAGTCCAAGGGCGAGTGCGGCGGTGGAGTGAGCGTTCGCCTGTCCGC
AAGCTTTCTAGACC
BO11579.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8369-PA | 285 | CG8369-RA | 1..282 | 17..298 | 1410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:42:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8369-RA | 431 | CG8369-RA | 91..372 | 17..298 | 1410 | 100 | Plus |
CG8369-RC | 774 | CG8369-RC | 459..715 | 42..298 | 1285 | 100 | Plus |
CG8369-RB | 479 | CG8369-RB | 166..420 | 44..298 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:42:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8822466..8822666 | 42..242 | 1005 | 100 | Plus |
3R | 32079331 | 3R | 8822724..8822779 | 243..298 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:42:36 has no hits.
BO11579.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:34 Download gff for
BO11579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-PA | 1..285 | 17..299 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:35:48 Download gff for
BO11579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-PA | 1..285 | 17..299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:12:50 Download gff for
BO11579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-RA | 79..372 | 5..298 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:31:29 Download gff for
BO11579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-RA | 79..372 | 5..298 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:31:29 Download gff for
BO11579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8822724..8822779 | 243..298 | 100 | | Plus |
3R | 8822469..8822666 | 45..242 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:12:50 Download gff for
BO11579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4648191..4648388 | 45..242 | 100 | -> | Plus |
arm_3R | 4648446..4648501 | 243..298 | 100 | | Plus |
BO11579.complete Sequence
316 bp assembled on 2006-10-11
GenBank Submission: FJ632112
> BO11579.complete
GAAGTTATCAGTCGACATGCGTTTCGCTCTGTTTGCTTTTCTAGCACTGT
GCTTGCTGGCATTCGTCCTGGCTACTCCGGCCAAGGACACCAAGAAGCCG
GCCACCAACAGTTGCCAGCACAACTGCGGTGAAGTCTACGAGCCCGTTTG
TGCCAAGGCCAAAAACAGCAGCAAGGAGCGCCTCCTCACCTTTGGCAGCC
CGTGCGTCATGGCCAACTACAACTGCCAGCATGCCGACGATCCATTCGAG
CAGAAGTCCAAGGGCGAGTGCGGCGGTGGAGTGAGCGTTCGCCTGTCCGC
AAGCTTTCTAGACCAT
BO11579.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:31:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8369-RA | 285 | CG8369-PA | 1..282 | 17..298 | 1410 | 100 | Plus |
CG8369-RC | 93 | CG8369-PC | 1..90 | 209..298 | 450 | 100 | Plus |
CG8369-RB | 93 | CG8369-PB | 1..90 | 209..298 | 450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8369-RA | 431 | CG8369-RA | 91..372 | 17..298 | 1410 | 100 | Plus |
CG8369-RC | 774 | CG8369-RC | 459..715 | 42..298 | 1285 | 100 | Plus |
CG8369-RB | 479 | CG8369-RB | 166..420 | 44..298 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:31:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8822466..8822666 | 42..242 | 1005 | 100 | Plus |
3R | 32079331 | 3R | 8822724..8822779 | 243..298 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:31:29 has no hits.
BO11579.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:16 Download gff for
BO11579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-RA | 1..285 | 17..299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:26 Download gff for
BO11579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-RA | 68..361 | 5..298 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:22 Download gff for
BO11579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-RA | 91..372 | 17..300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:16 Download gff for
BO11579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-RA | 68..361 | 5..298 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:02 Download gff for
BO11579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8369-RA | 91..372 | 17..300 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:02 Download gff for
BO11579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8822098..8822125 | 17..44 | 100 | -> | Plus |
3R | 8822469..8822666 | 45..242 | 100 | -> | Plus |
3R | 8822724..8822779 | 243..300 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:22 Download gff for
BO11579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4647820..4647847 | 17..44 | 100 | -> | Plus |
arm_3R | 4648191..4648388 | 45..242 | 100 | -> | Plus |
arm_3R | 4648446..4648501 | 243..300 | 96 | | Plus |
BO11579.pep Sequence
Translation from 16 to 316
> BO11579.pep
MRFALFAFLALCLLAFVLATPAKDTKKPATNSCQHNCGEVYEPVCAKAKN
SSKERLLTFGSPCVMANYNCQHADDPFEQKSKGECGGGVSVRLSASFLDH
BO11579.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8369-PA | 94 | CG8369-PA | 1..94 | 1..94 | 505 | 100 | Plus |
CG8369-PC | 30 | CG8369-PC | 1..30 | 65..94 | 166 | 100 | Plus |
CG8369-PB | 30 | CG8369-PB | 1..30 | 65..94 | 166 | 100 | Plus |