Clone Sequence Records
BO11584.3prime Sequence
317 bp (316 high quality bases) assembled on 2006-04-19
> BO11584.3prime
ATGGTCTAGAAAGCTTGCGTTGGCAGTTACTCTGCTATTCATGTAAAATT
GCTGGGCGGAGAGCAACAAAGTCAAAACATATATACATGCGGCAATCCAG
CAGTTGTAGGCATTCTGATTGTATGCTCTATTTGCAGCTGCATAAAAATC
TTCCAACGAATGGTATTCCTCCTCAAGAGGTAAGTCCTCAATGAGGGCTA
CACTATTTATGTAGAAGAATAGACCCATTAAAACCAATTGGACAATACCC
CAAACAGAGATAATAAGACCACAAAGTGATAGTTTCGGGCCACAGATTTT
CATGTCGACTGATAACT
BO11584.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40127-PA | 288 | CG40127-RA | 1..285 | 303..19 | 1425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:08:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40127-RA | 505 | CG40127-RA | 114..398 | 303..19 | 1425 | 100 | Minus |
CG40127-RB | 1160 | CG40127-RB | 114..398 | 303..19 | 1425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4187760..4187880 | 115..235 | 605 | 100 | Plus |
2R | 25286936 | 2R | 4187597..4187696 | 19..118 | 500 | 100 | Plus |
2R | 25286936 | 2R | 4187944..4188014 | 233..303 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:08:37 has no hits.
BO11584.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:32 Download gff for
BO11584.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-PA | 1..288 | 15..303 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:55:00 Download gff for
BO11584.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-RB | 109..407 | 9..310 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:04 Download gff for
BO11584.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-RB | 109..407 | 9..310 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:04 Download gff for
BO11584.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4187588..4187692 | 9..114 | 96 | <- | Plus |
2R | 4187760..4187879 | 115..234 | 100 | <- | Plus |
2R | 4187946..4188019 | 235..310 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:55:00 Download gff for
BO11584.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 75093..75197 | 9..114 | 96 | <- | Plus |
arm_2R | 75265..75384 | 115..234 | 100 | <- | Plus |
arm_2R | 75451..75524 | 235..310 | 94 | | Plus |
BO11584.5prime Sequence
317 bp (316 high quality bases) assembled on 2006-04-19
> BO11584.5prime
GAAGTTATCAGTCGACATGAAAATCTGTGGCCCGAAACTATCACTTTGTG
GTCTTATTATCTCTGTTTGGGGTATTGTCCAATTGGTTTTAATGGGTCTA
TTCTTCTACATAAATAGTGTAGCCCTCATTGAGGACTTACCTCTTGAGGA
GGAATACCATTCGTTGGAAGATTTTTATGCAGCTGCAAATAGAGCATACA
ATCAGAATGCCTACAACTGCTGGATTGCCGCATGTATATATGTTTTGACT
TTGTTGCTCTCCGCCCAGCAATTTTACATGAATAGCAGAGTAACTGCCAA
CGCAAGCTTTCTAGACC
BO11584.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40127-PA | 288 | CG40127-RA | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:27:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40127-RA | 505 | CG40127-RA | 114..398 | 17..301 | 1425 | 100 | Plus |
CG40127-RB | 1160 | CG40127-RB | 114..398 | 17..301 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4187760..4187880 | 205..85 | 605 | 100 | Minus |
2R | 25286936 | 2R | 4187597..4187696 | 301..202 | 500 | 100 | Minus |
2R | 25286936 | 2R | 4187944..4188014 | 87..17 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:27:13 has no hits.
BO11584.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:33 Download gff for
BO11584.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-PA | 1..288 | 17..305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:30:38 Download gff for
BO11584.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-RB | 109..407 | 10..311 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:55:54 Download gff for
BO11584.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-RB | 109..407 | 10..311 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:55:54 Download gff for
BO11584.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4187588..4187692 | 206..311 | 96 | <- | Minus |
2R | 4187760..4187879 | 86..205 | 100 | <- | Minus |
2R | 4187946..4188019 | 10..85 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:30:38 Download gff for
BO11584.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 75093..75197 | 206..311 | 96 | <- | Minus |
arm_2R | 75265..75384 | 86..205 | 100 | <- | Minus |
arm_2R | 75451..75524 | 10..85 | 94 | | Minus |
BO11584.complete Sequence
319 bp assembled on 2006-10-11
GenBank Submission: FJ632114
> BO11584.complete
GAAGTTATCAGTCGACATGAAAATCTGTGGCCCGAAACTATCACTTTGTG
GTCTTATTATCTCTGTTTGGGGTATTGTCCAATTGGTTTTAATGGGTCTA
TTCTTCTACATAAATAGTGTAGCCCTCATTGAGGACTTACCTCTTGAGGA
GGAATACCATTCGTTGGAAGATTTTTATGCAGCTGCAAATAGAGCATACA
ATCAGAATGCCTACAACTGCTGGATTGCCGCATGTATATATGTTTTGACT
TTGTTGCTCTCCGCCCAGCAATTTTACATGAATAGCAGAGTAACTGCCAA
CGCAAGCTTTCTAGACCAT
BO11584.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40127-RA | 288 | CG40127-PA | 1..285 | 17..301 | 1425 | 100 | Plus |
CG40127-RB | 288 | CG40127-PB | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40127-RA | 505 | CG40127-RA | 114..398 | 17..301 | 1425 | 100 | Plus |
CG40127-RB | 1160 | CG40127-RB | 114..398 | 17..301 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4187760..4187880 | 205..85 | 605 | 100 | Minus |
2R | 25286936 | 2R | 4187597..4187696 | 301..202 | 500 | 100 | Minus |
2R | 25286936 | 2R | 4187944..4188014 | 87..17 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:40:28 has no hits.
BO11584.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:17 Download gff for
BO11584.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-RA | 1..288 | 17..305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:28 Download gff for
BO11584.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-RA | 138..436 | 10..311 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:58 Download gff for
BO11584.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-RB | 114..398 | 17..303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:17 Download gff for
BO11584.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-RA | 138..436 | 10..311 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:58 Download gff for
BO11584.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40127-RB | 114..398 | 17..303 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:58 Download gff for
BO11584.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4187595..4187692 | 206..303 | 97 | <- | Minus |
2R | 4187760..4187879 | 86..205 | 100 | <- | Minus |
2R | 4187946..4188014 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:58 Download gff for
BO11584.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 75100..75197 | 206..303 | 97 | <- | Minus |
arm_2R | 75265..75384 | 86..205 | 100 | <- | Minus |
arm_2R | 75451..75519 | 17..85 | 100 | | Minus |
BO11584.pep Sequence
Translation from 16 to 319
> BO11584.pep
MKICGPKLSLCGLIISVWGIVQLVLMGLFFYINSVALIEDLPLEEEYHSL
EDFYAAANRAYNQNAYNCWIAACIYVLTLLLSAQQFYMNSRVTANASFLD
H
BO11584.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40127-PA | 95 | CG40127-PA | 1..95 | 1..95 | 497 | 100 | Plus |
CG40127-PB | 95 | CG40127-PB | 1..95 | 1..95 | 497 | 100 | Plus |
CG11269-PA | 107 | CG11269-PA | 3..75 | 4..76 | 156 | 41.1 | Plus |