Clone BO11586 Report

Search the DGRC for BO11586

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:115
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptSmE-RA
Protein status:BO11586.pep: validated full length
Sequenced Size:316

Clone Sequence Records

BO11586.5prime Sequence

314 bp (313 high quality bases) assembled on 2006-04-19

> BO11586.5prime
GAAGTTATCAGTCGACATGTCGTTCAAAGGAAATCCCAAGGTGCAGAAGG
TGATGGTGCAGCCCATCAACCTGATCTTCCGTTACCTGCAGAACCGGTCC
CGCGTGCAAGTTTGGTTATACGAGAACATATCGCTGCGCATCGAGGGCCA
CATTGTGGGATTCGATGAGTACATGAATCTGGTGCTGGACGACGCCGAGG
AAGTCTATGTGAAGACCCGGCAGCGCCGCAACCTCGGGAGGATCATGCTC
AAGGGCGACAACATCACGCTCATACAGAACGTCAGTCCCACGAAGGACGC
AAGCTTTCTAGACC

BO11586.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG18591-PA 285 CG18591-RA 1..282 17..298 1410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
SmE-RA 521 CG18591-RA 108..389 17..298 1410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7885062..7885343 298..17 1410 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:22:03 has no hits.

BO11586.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:44 Download gff for BO11586.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18591-PA 1..285 17..299 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:00 Download gff for BO11586.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18591-PA 1..285 17..299 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:04:59 Download gff for BO11586.5prime
Subject Subject Range Query Range Percent Splice Strand
SmE-RA 98..394 7..304 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:30 Download gff for BO11586.5prime
Subject Subject Range Query Range Percent Splice Strand
SmE-RA 98..394 7..304 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:30 Download gff for BO11586.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7885057..7885353 7..304 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:04:59 Download gff for BO11586.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7885057..7885353 7..304 97   Minus

BO11586.3prime Sequence

314 bp (313 high quality bases) assembled on 2006-04-19

> BO11586.3prime
ATGGTCTAGAAAGCTTGCGTCCTTCGTGGGACTGACGTTCTGTATGAGCG
TGATGTTGTCGCCCTTGAGCATGATCCTCCCGAGGTTGCGGCGCTGCCGG
GTCTTCACATAGACTTCCTCGGCGTCGTCCAGCACCAGATTCATGTACTC
ATCGAATCCCACAATGTGGCCCTCGATGCGCAGCGATATGTTCTCGTATA
ACCAAACTTGCACGCGGGACCGGTTCTGCAGGTAACGGAAGATCAGGTTG
ATGGGCTGCACCATCACCTTCTGCACCTTGGGATTTCCTTTGAACGACAT
GTCGACTGATAACT

BO11586.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG18591-PA 285 CG18591-RA 1..282 300..19 1410 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
SmE-RA 521 CG18591-RA 108..389 300..19 1410 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7885062..7885343 19..300 1410 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:52:15 has no hits.

BO11586.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:44 Download gff for BO11586.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18591-PA 1..285 18..300 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:35:59 Download gff for BO11586.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18591-PA 1..285 18..300 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:36:43 Download gff for BO11586.3prime
Subject Subject Range Query Range Percent Splice Strand
SmE-RA 98..394 13..310 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:15 Download gff for BO11586.3prime
Subject Subject Range Query Range Percent Splice Strand
SmE-RA 98..394 13..310 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:15 Download gff for BO11586.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7885057..7885353 13..310 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:36:43 Download gff for BO11586.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7885057..7885353 13..310 97   Plus

BO11586.complete Sequence

316 bp assembled on 2006-10-11

GenBank Submission: FJ632115

> BO11586.complete
GAAGTTATCAGTCGACATGTCGTTCAAAGGAAATCCCAAGGTGCAGAAGG
TGATGGTGCAGCCCATCAACCTGATCTTCCGTTACCTGCAGAACCGGTCC
CGCGTGCAAGTTTGGTTATACGAGAACATATCGCTGCGCATCGAGGGCCA
CATTGTGGGATTCGATGAGTACATGAATCTGGTGCTGGACGACGCCGAGG
AAGTCTATGTGAAGACCCGGCAGCGCCGCAACCTCGGGAGGATCATGCTC
AAGGGCGACAACATCACGCTCATACAGAACGTCAGTCCCACGAAGGACGC
AAGCTTTCTAGACCAT

BO11586.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
SmE-RA 285 CG18591-PA 1..282 17..298 1410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
SmE-RA 521 CG18591-RA 108..389 17..298 1410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7885062..7885343 298..17 1410 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:43:21 has no hits.

BO11586.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:18 Download gff for BO11586.complete
Subject Subject Range Query Range Percent Splice Strand
CG18591-RA 1..285 17..299 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:29 Download gff for BO11586.complete
Subject Subject Range Query Range Percent Splice Strand
CG18591-RA 73..369 7..304 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:36 Download gff for BO11586.complete
Subject Subject Range Query Range Percent Splice Strand
SmE-RA 108..389 17..300 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:19 Download gff for BO11586.complete
Subject Subject Range Query Range Percent Splice Strand
CG18591-RA 73..369 7..304 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:17 Download gff for BO11586.complete
Subject Subject Range Query Range Percent Splice Strand
SmE-RA 108..389 17..300 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:17 Download gff for BO11586.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7885060..7885343 17..300 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:36 Download gff for BO11586.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7885060..7885343 17..300 99   Minus

BO11586.pep Sequence

Translation from 16 to 316

> BO11586.pep
MSFKGNPKVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFD
EYMNLVLDDAEEVYVKTRQRRNLGRIMLKGDNITLIQNVSPTKDASFLDH

BO11586.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
SmE-PA 94 CG18591-PA 1..94 1..94 482 100 Plus