Clone Sequence Records
BO11588.5prime Sequence
368 bp (367 high quality bases) assembled on 2006-04-19
> BO11588.5prime
GAAGTTATCAGTCGACATGTTCAAGATCCTGCTTGTCTGTTCTCTCGCCG
CCCTGGTGGCCGCCAACGCTAATGTGGAGGTCAAGGAGCTGGTCAACGAT
GTCCAGCCCGATGGCTTTGTCAGCAAGTTGGTCCTCGACGACGGATCTGC
CTCCTCCGCCACCGGAGACATCCACGGCAACATCGACGGAGTCTTCGAGT
GGATCTCCCCCGAGGGTGTCCATGTGCGAGTGAGCTACAAGGCTGACGAG
AACGGATACCAGCCCCAGAGTGACCTGCTGCCCACTCCTCCTCCGATCCC
AGCTGCCATCCTGAAGGCTATCGCCTACATCGAGGCTAACCCCAGCAAGA
ACGCAAGCTTTCTAGACC
BO11588.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2043-PA | 339 | Lcp3-RA | 1..336 | 17..352 | 1680 | 100 | Plus |
CG2044-PA | 339 | Lcp4-RA | 214..315 | 230..331 | 335 | 93.1 | Plus |
CG2044-PA | 339 | Lcp4-RA | 61..119 | 77..135 | 195 | 93.2 | Plus |
CG2044-PA | 339 | Lcp4-RA | 155..200 | 171..216 | 155 | 93.4 | Plus |
CG7941-PA | 405 | CG7941-RA | 286..320 | 278..312 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:48:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp3-RB | 730 | CG2043-RB | 180..515 | 17..352 | 1680 | 100 | Plus |
Lcp3-RA | 513 | CG2043-RA | 47..382 | 17..352 | 1680 | 100 | Plus |
Lcp4-RB | 527 | CG2044-RB | 43..382 | 10..349 | 995 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8435557..8435880 | 29..352 | 1620 | 100 | Plus |
2R | 25286936 | 2R | 8437765..8438085 | 29..349 | 930 | 86 | Plus |
3L | 28110227 | 3L | 10890454..10890525 | 241..312 | 240 | 88.9 | Plus |
3L | 28110227 | 3L | 10892254..10892325 | 241..312 | 210 | 86.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:48:41 has no hits.
BO11588.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:48 Download gff for
BO11588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-PA | 1..339 | 17..356 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:06 Download gff for
BO11588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2043-PA | 1..339 | 17..356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:38:13 Download gff for
BO11588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-RA | 42..386 | 12..357 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:32 Download gff for
BO11588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-RA | 42..386 | 12..357 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:32 Download gff for
BO11588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8435557..8435884 | 29..357 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:38:13 Download gff for
BO11588.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4323062..4323389 | 29..357 | 99 | | Plus |
BO11588.3prime Sequence
368 bp (367 high quality bases) assembled on 2006-04-19
> BO11588.3prime
ATGGTCTAGAAAGCTTGCGTTCTTGCTGGGGTTAGCCTCGATGTAGGCGA
TAGCCTTCAGGATGGCAGCTGGGATCGGAGGAGGAGTGGGCAGCAGGTCA
CTCTGGGGCTGGTATCCGTTCTCGTCAGCCTTGTAGCTCACTCGCACATG
GACACCCTCGGGGGAGATCCACTCGAAGACTCCGTCGATGTTGCCGTGGA
TGTCTCCGGTGGCGGAGGAGGCAGATCCGTCGTCGAGGACCAACTTGCTG
ACAAAGCCATCGGGCTGGACATCGTTGACCAGCTCCTTGACCTCCACATT
AGCGTTGGCGGCCACCAGGGCGGCGAGAGAACAGACAAGCAGGATCTTGA
ACATGTCGACTGATAACT
BO11588.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2043-PA | 339 | Lcp3-RA | 1..336 | 354..19 | 1680 | 100 | Minus |
CG2044-PA | 339 | Lcp4-RA | 214..315 | 141..40 | 335 | 93.1 | Minus |
CG2044-PA | 339 | Lcp4-RA | 61..119 | 294..236 | 195 | 93.2 | Minus |
CG2044-PA | 339 | Lcp4-RA | 155..200 | 200..155 | 155 | 93.4 | Minus |
CG7941-PA | 405 | CG7941-RA | 286..320 | 93..59 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:13:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp3-RB | 730 | CG2043-RB | 180..515 | 354..19 | 1680 | 100 | Minus |
Lcp3-RA | 513 | CG2043-RA | 47..382 | 354..19 | 1680 | 100 | Minus |
Lcp4-RB | 527 | CG2044-RB | 43..382 | 361..22 | 995 | 86.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:13:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8435557..8435880 | 342..19 | 1620 | 100 | Minus |
2R | 25286936 | 2R | 8437765..8438085 | 342..22 | 930 | 86 | Minus |
3L | 28110227 | 3L | 10890454..10890525 | 130..59 | 240 | 88.9 | Minus |
3L | 28110227 | 3L | 10892254..10892325 | 130..59 | 210 | 86.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:13:50 has no hits.
BO11588.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:47 Download gff for
BO11588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-PA | 1..339 | 15..354 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:04 Download gff for
BO11588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2043-PA | 1..339 | 15..354 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:24:18 Download gff for
BO11588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-RA | 42..386 | 14..359 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:32:10 Download gff for
BO11588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-RA | 42..386 | 14..359 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:32:10 Download gff for
BO11588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8435557..8435884 | 14..342 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:24:18 Download gff for
BO11588.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4323062..4323389 | 14..342 | 99 | | Minus |
BO11588.complete Sequence
370 bp assembled on 2006-10-11
GenBank Submission: FJ632116
> BO11588.complete
GAAGTTATCAGTCGACATGTTCAAGATCCTGCTTGTCTGTTCTCTCGCCG
CCCTGGTGGCCGCCAACGCTAATGTGGAGGTCAAGGAGCTGGTCAACGAT
GTCCAGCCCGATGGCTTTGTCAGCAAGTTGGTCCTCGACGACGGATCTGC
CTCCTCCGCCACCGGAGACATCCACGGCAACATCGACGGAGTCTTCGAGT
GGATCTCCCCCGAGGGTGTCCATGTGCGAGTGAGCTACAAGGCTGACGAG
AACGGATACCAGCCCCAGAGTGACCTGCTGCCCACTCCTCCTCCGATCCC
AGCTGCCATCCTGAAGGCTATCGCCTACATCGAGGCTAACCCCAGCAAGA
ACGCAAGCTTTCTAGACCAT
BO11588.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp3-RB | 339 | CG2043-PB | 1..336 | 17..352 | 1680 | 100 | Plus |
Lcp3-RA | 339 | CG2043-PA | 1..336 | 17..352 | 1680 | 100 | Plus |
Lcp4-RB | 339 | CG2044-PB | 1..333 | 17..349 | 990 | 86.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:40:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp3-RB | 730 | CG2043-RB | 180..515 | 17..352 | 1680 | 100 | Plus |
Lcp3-RA | 513 | CG2043-RA | 47..382 | 17..352 | 1680 | 100 | Plus |
Lcp4-RB | 527 | CG2044-RB | 43..382 | 10..349 | 995 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:40:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8435557..8435880 | 29..352 | 1620 | 100 | Plus |
2R | 25286936 | 2R | 8437765..8438085 | 29..349 | 930 | 86 | Plus |
3L | 28110227 | 3L | 10890454..10890525 | 241..312 | 240 | 88.9 | Plus |
3L | 28110227 | 3L | 10892254..10892325 | 241..312 | 210 | 86.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:40:17 has no hits.
BO11588.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:19 Download gff for
BO11588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-RA | 1..339 | 17..356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:31 Download gff for
BO11588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-RA | 41..385 | 12..357 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:50 Download gff for
BO11588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-RA | 52..382 | 22..354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:20 Download gff for
BO11588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-RA | 41..385 | 12..357 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:55 Download gff for
BO11588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp3-RA | 52..382 | 22..354 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:55 Download gff for
BO11588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8435553..8435880 | 22..354 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:50 Download gff for
BO11588.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4323058..4323385 | 22..354 | 98 | | Plus |
BO11588.pep Sequence
Translation from 16 to 370
> BO11588.pep
MFKILLVCSLAALVAANANVEVKELVNDVQPDGFVSKLVLDDGSASSATG
DIHGNIDGVFEWISPEGVHVRVSYKADENGYQPQSDLLPTPPPIPAAILK
AIAYIEANPSKNASFLDH
BO11588.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp3-PB | 112 | CG2043-PB | 1..112 | 1..112 | 573 | 100 | Plus |
Lcp3-PA | 112 | CG2043-PA | 1..112 | 1..112 | 573 | 100 | Plus |
Lcp4-PB | 112 | CG2044-PB | 1..111 | 1..111 | 512 | 88.3 | Plus |
Lcp4-PA | 112 | CG2044-PA | 1..111 | 1..111 | 512 | 88.3 | Plus |
Lcp1-PB | 130 | CG11650-PB | 1..121 | 1..109 | 281 | 46.3 | Plus |