Clone Sequence Records
BO11590.3prime Sequence
383 bp (382 high quality bases) assembled on 2006-04-19
> BO11590.3prime
ATGGTCTAGAAAGCTTGCGGCGGCCTTGTTGAGGCGCTTCTGGCGCTCCA
GCAGCCGGCGCTCCCGCTCGAACTCCTTCATGCGGAGCACGTAGTCCTCG
TACTCGCAGGTGAGGTACTCGTGCTTCTGGTGGGCGCACTTGTACACAAA
CGGGAAGGTGTCGCTGCGGCAGGCCTGGTAGGCGATAGCCAGGTGGGCGC
AGTAGTCGCGGAATTCCAGCGGCAGCTTGGCGGACTCCATCTCCTCCTGG
GTGGCGATCATCACACGCTCCTTGCGCGACTTGAAGCCCAGCAGTGGGTC
AAAGGTGGGCACCACGTCCGGGCCGGGCATCACGTCCGGTTTCATGTAGT
GCGTCAGCGCGTTGCCCATGTCGACTGATAACT
BO11590.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5548-PA | 354 | CG5548-RA | 1..351 | 369..19 | 1755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:41:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5548-RC | 751 | CG5548-RC | 253..603 | 369..19 | 1755 | 100 | Minus |
| CG5548-RB | 943 | CG5548-RB | 67..417 | 369..19 | 1755 | 100 | Minus |
| CG5548-RA | 565 | CG5548-RA | 67..417 | 369..19 | 1755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15064050..15064400 | 369..19 | 1755 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:41:16 has no hits.
BO11590.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:51 Download gff for
BO11590.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-PA | 1..354 | 18..369 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:10 Download gff for
BO11590.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-PA | 1..354 | 18..369 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:36:01 Download gff for
BO11590.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-RA | 58..424 | 11..377 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:20 Download gff for
BO11590.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-RA | 58..424 | 11..377 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:20 Download gff for
BO11590.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15064046..15064407 | 11..377 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:36:01 Download gff for
BO11590.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14958079..14958440 | 11..377 | 97 | | Minus |
BO11590.5prime Sequence
383 bp (382 high quality bases) assembled on 2006-04-19
> BO11590.5prime
GAAGTTATCAGTCGACATGGGCAACGCGCTGACGCACTACATGAAACCGG
ACGTGATGCCCGGCCCGGACGTGGTGCCCACCTTTGACCCACTGCTGGGC
TTCAAGTCGCGCAAGGAGCGTGTGATGATCGCCACCCAGGAGGAGATGGA
GTCCGCCAAGCTGCCGCTGGAATTCCGCGACTACTGCGCCCACCTGGCTA
TCGCCTACCAGGCCTGCCGCAGCGACACCTTCCCGTTTGTGTACAAGTGC
GCCCACCAGAAGCACGAGTACCTCACCTGCGAGTACGAGGACTACGTGCT
CCGCATGAAGGAGTTCGAGCGGGAGCGCCGGCTGCTGGAGCGCCAGAAGC
GCCTCAACAAGGCCGCCGCAAGCTTTCTAGACC
BO11590.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5548-PA | 354 | CG5548-RA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5548-RC | 751 | CG5548-RC | 253..603 | 17..367 | 1755 | 100 | Plus |
| CG5548-RB | 943 | CG5548-RB | 67..417 | 17..367 | 1755 | 100 | Plus |
| CG5548-RA | 565 | CG5548-RA | 67..417 | 17..367 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15064050..15064400 | 17..367 | 1755 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:58:08 has no hits.
BO11590.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:52 Download gff for
BO11590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-PA | 1..354 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:11 Download gff for
BO11590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-PA | 1..354 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:51:15 Download gff for
BO11590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-RA | 58..424 | 9..375 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:16:07 Download gff for
BO11590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-RA | 58..424 | 9..375 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:16:07 Download gff for
BO11590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15064046..15064407 | 9..375 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:51:15 Download gff for
BO11590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14958079..14958440 | 9..375 | 97 | | Plus |
BO11590.complete Sequence
385 bp assembled on 2006-10-11
GenBank Submission: FJ632117
> BO11590.complete
GAAGTTATCAGTCGACATGGGCAACGCGCTGACGCACTACATGAAACCGG
ACGTGATGCCCGGCCCGGACGTGGTGCCCACCTTTGACCCACTGCTGGGC
TTCAAGTCGCGCAAGGAGCGTGTGATGATCGCCACCCAGGAGGAGATGGA
GTCCGCCAAGCTGCCGCTGGAATTCCGCGACTACTGCGCCCACCTGGCTA
TCGCCTACCAGGCCTGCCGCAGCGACACCTTCCCGTTTGTGTACAAGTGC
GCCCACCAGAAGCACGAGTACCTCACCTGCGAGTACGAGGACTACGTGCT
CCGCATGAAGGAGTTCGAGCGGGAGCGCCGGCTGCTGGAGCGCCAGAAGC
GCCTCAACAAGGCCGCCGCAAGCTTTCTAGACCAT
BO11590.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5548-RC | 354 | CG5548-PC | 1..351 | 17..367 | 1755 | 100 | Plus |
| CG5548-RB | 354 | CG5548-PB | 1..351 | 17..367 | 1755 | 100 | Plus |
| CG5548-RA | 354 | CG5548-PA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5548-RC | 751 | CG5548-RC | 253..603 | 17..367 | 1755 | 100 | Plus |
| CG5548-RB | 943 | CG5548-RB | 67..417 | 17..367 | 1755 | 100 | Plus |
| CG5548-RA | 565 | CG5548-RA | 67..417 | 17..367 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15064050..15064400 | 17..367 | 1755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:02:58 has no hits.
BO11590.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:18 Download gff for
BO11590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-RA | 1..354 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:42 Download gff for
BO11590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-RA | 65..431 | 9..375 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:45 Download gff for
BO11590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-RA | 67..417 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:18 Download gff for
BO11590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-RA | 65..431 | 9..375 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:19 Download gff for
BO11590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5548-RA | 67..417 | 17..369 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:19 Download gff for
BO11590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15064050..15064400 | 17..369 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:45 Download gff for
BO11590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14958083..14958433 | 17..369 | 99 | | Plus |
BO11590.pep Sequence
Translation from 16 to 385
> BO11590.pep
MGNALTHYMKPDVMPGPDVVPTFDPLLGFKSRKERVMIATQEEMESAKLP
LEFRDYCAHLAIAYQACRSDTFPFVYKCAHQKHEYLTCEYEDYVLRMKEF
ERERRLLERQKRLNKAAASFLDH
BO11590.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5548-PC | 117 | CG5548-PC | 1..117 | 1..117 | 626 | 100 | Plus |
| CG5548-PB | 117 | CG5548-PB | 1..117 | 1..117 | 626 | 100 | Plus |
| CG5548-PA | 117 | CG5548-PA | 1..117 | 1..117 | 626 | 100 | Plus |
