Clone BO11591 Report

Search the DGRC for BO11591

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:115
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG8680-RA
Protein status:BO11591.pep: validated full length
Sequenced Size:412

Clone Sequence Records

BO11591.3prime Sequence

410 bp (409 high quality bases) assembled on 2006-04-19

> BO11591.3prime
ATGGTCTAGAAAGCTTGCATGATGATGGTCATCTTTCTTGACGAAGCGCA
GGCCGCAGTAGCCGCAGATGTGATTTCCGGGTTTGTCCAGGTTGATGTAC
ACTTTGGGATGACCCAAAGGACCATCGCCGCCGTCGCAGAAGACAACTCG
TTCGGTGCACTCCTTGGGTGGCACCTCCTCGATGAGCTTGATGCCCCAGT
TCTCGTTCACATACCGCTTGGCGTTCACGAACCGGGCATTGCGGTAGTCC
TCCTTATCGAACACTTGTCCGGTGTGTGTAACCTTCTCGATGTCGCCGCG
GCAGCTGGAGTGGCGAACGCTGGCCAGTGGGGACATCCAATTCTGTCGCG
GAAGGCCGAGTTTGGACAAATTGTTTACCAATTGCTTGCTGGCCATGTCG
ACTGATAACT

BO11591.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8680-PA 381 CG8680-RA 1..378 396..19 1890 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8680-RC 630 CG8680-RC 148..525 396..19 1890 100 Minus
CG8680-RB 867 CG8680-RB 62..439 396..19 1890 100 Minus
CG8680-RA 544 CG8680-RA 62..439 396..19 1890 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5099736..5099913 87..264 890 100 Plus
2L 23513712 2L 5100008..5100141 263..396 670 100 Plus
2L 23513712 2L 5099605..5099674 19..88 350 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:31:14 has no hits.

BO11591.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:53 Download gff for BO11591.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8680-PA 1..381 16..396 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:13 Download gff for BO11591.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8680-PA 1..381 16..396 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:26:45 Download gff for BO11591.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8680-RA 62..439 19..396 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:58 Download gff for BO11591.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8680-RA 62..439 19..396 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:58 Download gff for BO11591.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5099605..5099673 19..87 100 <- Plus
2L 5099737..5099913 88..264 100 <- Plus
2L 5100010..5100141 265..396 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:26:45 Download gff for BO11591.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5099605..5099673 19..87 100 <- Plus
arm_2L 5099737..5099913 88..264 100 <- Plus
arm_2L 5100010..5100141 265..396 100   Plus

BO11591.5prime Sequence

410 bp (409 high quality bases) assembled on 2006-04-19

> BO11591.5prime
GAAGTTATCAGTCGACATGGCCAGCAAGCAATTGGTAAACAATTTGTCCA
AACTCGGCCTTCCGCGACAGAATTGGATGTCCCCACTGGCCAGCGTTCGC
CACTCCAGCTGCCGCGGCGACATCGAGAAGGTTACACACACCGGACAAGT
GTTCGATAAGGAGGACTACCGCAATGCCCGGTTCGTGAACGCCAAGCGGT
ATGTGAACGAGAACTGGGGCATCAAGCTCATCGAGGAGGTGCCACCCAAG
GAGTGCACCGAACGAGTTGTCTTCTGCGACGGCGGCGATGGTCCTTTGGG
TCATCCCAAAGTGTACATCAACCTGGACAAACCCGGAAATCACATCTGCG
GCTACTGCGGCCTGCGCTTCGTCAAGAAAGATGACCATCATCATGCAAGC
TTTCTAGACC

BO11591.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8680-PA 381 CG8680-RA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8680-RC 630 CG8680-RC 148..525 17..394 1890 100 Plus
CG8680-RB 867 CG8680-RB 62..439 17..394 1890 100 Plus
CG8680-RA 544 CG8680-RA 62..439 17..394 1890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5099736..5099913 326..149 890 100 Minus
2L 23513712 2L 5100008..5100141 150..17 670 100 Minus
2L 23513712 2L 5099605..5099674 394..325 350 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:17:54 has no hits.

BO11591.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:54 Download gff for BO11591.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8680-PA 1..381 17..397 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:14 Download gff for BO11591.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8680-PA 1..381 17..397 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:38:08 Download gff for BO11591.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8680-RA 62..439 17..394 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:19 Download gff for BO11591.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8680-RA 62..439 17..394 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:19 Download gff for BO11591.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5099605..5099673 326..394 100 <- Minus
2L 5099737..5099913 149..325 100 <- Minus
2L 5100010..5100141 17..148 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:38:08 Download gff for BO11591.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5099605..5099673 326..394 100 <- Minus
arm_2L 5099737..5099913 149..325 100 <- Minus
arm_2L 5100010..5100141 17..148 100   Minus

BO11591.complete Sequence

412 bp assembled on 2006-10-11

GenBank Submission: FJ632118

> BO11591.complete
GAAGTTATCAGTCGACATGGCCAGCAAGCAATTGGTAAACAATTTGTCCA
AACTCGGCCTTCCGCGACAGAATTGGATGTCCCCACTGGCCAGCGTTCGC
CACTCCAGCTGCCGCGGCGACATCGAGAAGGTTACACACACCGGACAAGT
GTTCGATAAGGAGGACTACCGCAATGCCCGGTTCGTGAACGCCAAGCGGT
ATGTGAACGAGAACTGGGGCATCAAGCTCATCGAGGAGGTGCCACCCAAG
GAGTGCACCGAACGAGTTGTCTTCTGCGACGGCGGCGATGGTCCTTTGGG
TCATCCCAAAGTGTACATCAACCTGGACAAACCCGGAAATCACATCTGCG
GCTACTGCGGCCTGCGCTTCGTCAAGAAAGATGACCATCATCATGCAAGC
TTTCTAGACCAT

BO11591.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8680-RC 381 CG8680-PC 1..378 17..394 1890 100 Plus
CG8680-RB 381 CG8680-PB 1..378 17..394 1890 100 Plus
CG8680-RA 381 CG8680-PA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8680-RC 630 CG8680-RC 148..525 17..394 1890 100 Plus
CG8680-RB 867 CG8680-RB 62..439 17..394 1890 100 Plus
CG8680-RA 544 CG8680-RA 62..439 17..394 1890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5099736..5099913 326..149 890 100 Minus
2L 23513712 2L 5100008..5100141 150..17 670 100 Minus
2L 23513712 2L 5099605..5099674 394..325 350 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:23:25 has no hits.

BO11591.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:19 Download gff for BO11591.complete
Subject Subject Range Query Range Percent Splice Strand
CG8680-RA 1..381 17..397 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:43 Download gff for BO11591.complete
Subject Subject Range Query Range Percent Splice Strand
CG8680-RA 74..451 17..394 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:43 Download gff for BO11591.complete
Subject Subject Range Query Range Percent Splice Strand
CG8680-RA 62..439 17..396 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:19 Download gff for BO11591.complete
Subject Subject Range Query Range Percent Splice Strand
CG8680-RA 38..415 17..394 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:31 Download gff for BO11591.complete
Subject Subject Range Query Range Percent Splice Strand
CG8680-RA 62..439 17..396 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:31 Download gff for BO11591.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5099602..5099673 326..396 97 <- Minus
2L 5099737..5099913 149..325 100 <- Minus
2L 5100010..5100141 17..148 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:43 Download gff for BO11591.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5099602..5099673 326..396 97 <- Minus
arm_2L 5099737..5099913 149..325 100 <- Minus
arm_2L 5100010..5100141 17..148 100   Minus

BO11591.pep Sequence

Translation from 16 to 412

> BO11591.pep
MASKQLVNNLSKLGLPRQNWMSPLASVRHSSCRGDIEKVTHTGQVFDKED
YRNARFVNAKRYVNENWGIKLIEEVPPKECTERVVFCDGGDGPLGHPKVY
INLDKPGNHICGYCGLRFVKKDDHHHASFLDH

BO11591.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8680-PC 126 CG8680-PC 1..126 1..126 702 100 Plus
CG8680-PB 126 CG8680-PB 1..126 1..126 702 100 Plus
CG8680-PA 126 CG8680-PA 1..126 1..126 702 100 Plus