Clone Sequence Records
BO11591.3prime Sequence
410 bp (409 high quality bases) assembled on 2006-04-19
> BO11591.3prime
ATGGTCTAGAAAGCTTGCATGATGATGGTCATCTTTCTTGACGAAGCGCA
GGCCGCAGTAGCCGCAGATGTGATTTCCGGGTTTGTCCAGGTTGATGTAC
ACTTTGGGATGACCCAAAGGACCATCGCCGCCGTCGCAGAAGACAACTCG
TTCGGTGCACTCCTTGGGTGGCACCTCCTCGATGAGCTTGATGCCCCAGT
TCTCGTTCACATACCGCTTGGCGTTCACGAACCGGGCATTGCGGTAGTCC
TCCTTATCGAACACTTGTCCGGTGTGTGTAACCTTCTCGATGTCGCCGCG
GCAGCTGGAGTGGCGAACGCTGGCCAGTGGGGACATCCAATTCTGTCGCG
GAAGGCCGAGTTTGGACAAATTGTTTACCAATTGCTTGCTGGCCATGTCG
ACTGATAACT
BO11591.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8680-PA | 381 | CG8680-RA | 1..378 | 396..19 | 1890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8680-RC | 630 | CG8680-RC | 148..525 | 396..19 | 1890 | 100 | Minus |
CG8680-RB | 867 | CG8680-RB | 62..439 | 396..19 | 1890 | 100 | Minus |
CG8680-RA | 544 | CG8680-RA | 62..439 | 396..19 | 1890 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:31:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5099736..5099913 | 87..264 | 890 | 100 | Plus |
2L | 23513712 | 2L | 5100008..5100141 | 263..396 | 670 | 100 | Plus |
2L | 23513712 | 2L | 5099605..5099674 | 19..88 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:31:14 has no hits.
BO11591.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:53 Download gff for
BO11591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-PA | 1..381 | 16..396 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:13 Download gff for
BO11591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-PA | 1..381 | 16..396 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:26:45 Download gff for
BO11591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-RA | 62..439 | 19..396 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:58 Download gff for
BO11591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-RA | 62..439 | 19..396 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:58 Download gff for
BO11591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5099605..5099673 | 19..87 | 100 | <- | Plus |
2L | 5099737..5099913 | 88..264 | 100 | <- | Plus |
2L | 5100010..5100141 | 265..396 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:26:45 Download gff for
BO11591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5099605..5099673 | 19..87 | 100 | <- | Plus |
arm_2L | 5099737..5099913 | 88..264 | 100 | <- | Plus |
arm_2L | 5100010..5100141 | 265..396 | 100 | | Plus |
BO11591.5prime Sequence
410 bp (409 high quality bases) assembled on 2006-04-19
> BO11591.5prime
GAAGTTATCAGTCGACATGGCCAGCAAGCAATTGGTAAACAATTTGTCCA
AACTCGGCCTTCCGCGACAGAATTGGATGTCCCCACTGGCCAGCGTTCGC
CACTCCAGCTGCCGCGGCGACATCGAGAAGGTTACACACACCGGACAAGT
GTTCGATAAGGAGGACTACCGCAATGCCCGGTTCGTGAACGCCAAGCGGT
ATGTGAACGAGAACTGGGGCATCAAGCTCATCGAGGAGGTGCCACCCAAG
GAGTGCACCGAACGAGTTGTCTTCTGCGACGGCGGCGATGGTCCTTTGGG
TCATCCCAAAGTGTACATCAACCTGGACAAACCCGGAAATCACATCTGCG
GCTACTGCGGCCTGCGCTTCGTCAAGAAAGATGACCATCATCATGCAAGC
TTTCTAGACC
BO11591.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8680-PA | 381 | CG8680-RA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:17:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8680-RC | 630 | CG8680-RC | 148..525 | 17..394 | 1890 | 100 | Plus |
CG8680-RB | 867 | CG8680-RB | 62..439 | 17..394 | 1890 | 100 | Plus |
CG8680-RA | 544 | CG8680-RA | 62..439 | 17..394 | 1890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:17:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5099736..5099913 | 326..149 | 890 | 100 | Minus |
2L | 23513712 | 2L | 5100008..5100141 | 150..17 | 670 | 100 | Minus |
2L | 23513712 | 2L | 5099605..5099674 | 394..325 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:17:54 has no hits.
BO11591.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:54 Download gff for
BO11591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-PA | 1..381 | 17..397 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:14 Download gff for
BO11591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-PA | 1..381 | 17..397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:38:08 Download gff for
BO11591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-RA | 62..439 | 17..394 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:19 Download gff for
BO11591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-RA | 62..439 | 17..394 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:19 Download gff for
BO11591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5099605..5099673 | 326..394 | 100 | <- | Minus |
2L | 5099737..5099913 | 149..325 | 100 | <- | Minus |
2L | 5100010..5100141 | 17..148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:38:08 Download gff for
BO11591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5099605..5099673 | 326..394 | 100 | <- | Minus |
arm_2L | 5099737..5099913 | 149..325 | 100 | <- | Minus |
arm_2L | 5100010..5100141 | 17..148 | 100 | | Minus |
BO11591.complete Sequence
412 bp assembled on 2006-10-11
GenBank Submission: FJ632118
> BO11591.complete
GAAGTTATCAGTCGACATGGCCAGCAAGCAATTGGTAAACAATTTGTCCA
AACTCGGCCTTCCGCGACAGAATTGGATGTCCCCACTGGCCAGCGTTCGC
CACTCCAGCTGCCGCGGCGACATCGAGAAGGTTACACACACCGGACAAGT
GTTCGATAAGGAGGACTACCGCAATGCCCGGTTCGTGAACGCCAAGCGGT
ATGTGAACGAGAACTGGGGCATCAAGCTCATCGAGGAGGTGCCACCCAAG
GAGTGCACCGAACGAGTTGTCTTCTGCGACGGCGGCGATGGTCCTTTGGG
TCATCCCAAAGTGTACATCAACCTGGACAAACCCGGAAATCACATCTGCG
GCTACTGCGGCCTGCGCTTCGTCAAGAAAGATGACCATCATCATGCAAGC
TTTCTAGACCAT
BO11591.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8680-RC | 381 | CG8680-PC | 1..378 | 17..394 | 1890 | 100 | Plus |
CG8680-RB | 381 | CG8680-PB | 1..378 | 17..394 | 1890 | 100 | Plus |
CG8680-RA | 381 | CG8680-PA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:23:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8680-RC | 630 | CG8680-RC | 148..525 | 17..394 | 1890 | 100 | Plus |
CG8680-RB | 867 | CG8680-RB | 62..439 | 17..394 | 1890 | 100 | Plus |
CG8680-RA | 544 | CG8680-RA | 62..439 | 17..394 | 1890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:23:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5099736..5099913 | 326..149 | 890 | 100 | Minus |
2L | 23513712 | 2L | 5100008..5100141 | 150..17 | 670 | 100 | Minus |
2L | 23513712 | 2L | 5099605..5099674 | 394..325 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:23:25 has no hits.
BO11591.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:19 Download gff for
BO11591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-RA | 1..381 | 17..397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:43 Download gff for
BO11591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-RA | 74..451 | 17..394 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:43 Download gff for
BO11591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-RA | 62..439 | 17..396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:19 Download gff for
BO11591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-RA | 38..415 | 17..394 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:31 Download gff for
BO11591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8680-RA | 62..439 | 17..396 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:31 Download gff for
BO11591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5099602..5099673 | 326..396 | 97 | <- | Minus |
2L | 5099737..5099913 | 149..325 | 100 | <- | Minus |
2L | 5100010..5100141 | 17..148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:43 Download gff for
BO11591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5099602..5099673 | 326..396 | 97 | <- | Minus |
arm_2L | 5099737..5099913 | 149..325 | 100 | <- | Minus |
arm_2L | 5100010..5100141 | 17..148 | 100 | | Minus |
BO11591.pep Sequence
Translation from 16 to 412
> BO11591.pep
MASKQLVNNLSKLGLPRQNWMSPLASVRHSSCRGDIEKVTHTGQVFDKED
YRNARFVNAKRYVNENWGIKLIEEVPPKECTERVVFCDGGDGPLGHPKVY
INLDKPGNHICGYCGLRFVKKDDHHHASFLDH
BO11591.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8680-PC | 126 | CG8680-PC | 1..126 | 1..126 | 702 | 100 | Plus |
CG8680-PB | 126 | CG8680-PB | 1..126 | 1..126 | 702 | 100 | Plus |
CG8680-PA | 126 | CG8680-PA | 1..126 | 1..126 | 702 | 100 | Plus |