Clone BO11593 Report

Search the DGRC for BO11593

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:115
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG12481-RB
Protein status:BO11593.pep: validated full length
Sequenced Size:394

Clone Sequence Records

BO11593.3prime Sequence

392 bp (391 high quality bases) assembled on 2006-04-19

> BO11593.3prime
ATGGTCTAGAAAGCTTGCCTTCCGCTGTCTGGACTTTTGGGCCAGATCCT
TGGCGTAGGCCACGAACAGGATGTTGTGCTTGCTGGCCACCGGTTTCCCG
TCATCCTGATCGTATCGCACCTGCAGGGTATCCGAGTCCAGGGTAATACT
GCCCACCGGCTGACCCGGTTTGATGTAATAGTTCTGGCCCAACGAAGTGG
GTCTATGCTCGGTGACGAAGTGATAACGCATCGGTTCCATCTCCTCAATG
ACCAGCTTGGGTCTGCTTGTGGTCACATTGATGAGCATCGGTTCCATTTC
CGTCTGGCTCACCGGTTGGGCGCCAGTTGAAGCTAACAGCGCCATTGCAA
CGATGACAACACTTGATTTGGTCCACATGTCGACTGATAACT

BO11593.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12481-PB 363 CG12481-RB 1..360 378..19 1800 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12481-RB 589 CG12481-RB 26..386 379..19 1805 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14187278..14187638 379..19 1805 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:51:20 has no hits.

BO11593.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:57 Download gff for BO11593.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12481-PB 1..363 16..378 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:19 Download gff for BO11593.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12481-PB 1..363 16..378 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:53:14 Download gff for BO11593.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 18..390 15..392 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:08 Download gff for BO11593.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 18..390 15..392 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:08 Download gff for BO11593.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14187270..14187642 15..392 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:53:14 Download gff for BO11593.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14081303..14081675 15..392 98   Minus

BO11593.5prime Sequence

392 bp (391 high quality bases) assembled on 2006-04-19

> BO11593.5prime
GAAGTTATCAGTCGACATGTGGACCAAATCAAGTGTTGTCATCGTTGCAA
TGGCGCTGTTAGCTTCAACTGGCGCCCAACCGGTGAGCCAGACGGAAATG
GAACCGATGCTCATCAATGTGACCACAAGCAGACCCAAGCTGGTCATTGA
GGAGATGGAACCGATGCGTTATCACTTCGTCACCGAGCATAGACCCACTT
CGTTGGGCCAGAACTATTACATCAAACCGGGTCAGCCGGTGGGCAGTATT
ACCCTGGACTCGGATACCCTGCAGGTGCGATACGATCAGGATGACGGGAA
ACCGGTGGCCAGCAAGCACAACATCCTGTTCGTGGCCTACGCCAAGGATC
TGGCCCAAAAGTCCAGACAGCGGAAGGCAAGCTTTCTAGACC

BO11593.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12481-PB 363 CG12481-RB 1..360 17..376 1800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12481-RB 589 CG12481-RB 26..386 16..376 1805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14187278..14187638 16..376 1805 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:14:17 has no hits.

BO11593.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:10:58 Download gff for BO11593.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12481-PB 1..363 17..379 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:20 Download gff for BO11593.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12481-PB 1..363 17..379 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:18:36 Download gff for BO11593.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 19..390 5..380 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:06:42 Download gff for BO11593.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 19..390 5..380 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:06:42 Download gff for BO11593.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14187271..14187642 5..380 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:18:36 Download gff for BO11593.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14081304..14081675 5..380 98   Plus

BO11593.complete Sequence

394 bp assembled on 2006-10-11

GenBank Submission: FJ632119

> BO11593.complete
GAAGTTATCAGTCGACATGTGGACCAAATCAAGTGTTGTCATCGTTGCAA
TGGCGCTGTTAGCTTCAACTGGCGCCCAACCGGTGAGCCAGACGGAAATG
GAACCGATGCTCATCAATGTGACCACAAGCAGACCCAAGCTGGTCATTGA
GGAGATGGAACCGATGCGTTATCACTTCGTCACCGAGCATAGACCCACTT
CGTTGGGCCAGAACTATTACATCAAACCGGGTCAGCCGGTGGGCAGTATT
ACCCTGGACTCGGATACCCTGCAGGTGCGATACGATCAGGATGACGGGAA
ACCGGTGGCCAGCAAGCACAACATCCTGTTCGTGGCCTACGCCAAGGATC
TGGCCCAAAAGTCCAGACAGCGGAAGGCAAGCTTTCTAGACCAT

BO11593.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12481-RB 363 CG12481-PB 1..360 17..376 1800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12481-RB 589 CG12481-RB 26..386 16..376 1805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14187278..14187638 16..376 1805 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:25:09 has no hits.

BO11593.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:20 Download gff for BO11593.complete
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 1..363 17..379 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:46 Download gff for BO11593.complete
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 19..390 5..380 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:47 Download gff for BO11593.complete
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 27..386 17..378 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:21 Download gff for BO11593.complete
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 19..390 5..380 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:07 Download gff for BO11593.complete
Subject Subject Range Query Range Percent Splice Strand
CG12481-RB 27..386 17..378 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:07 Download gff for BO11593.complete
Subject Subject Range Query Range Percent Splice Strand
X 14187279..14187638 17..378 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:47 Download gff for BO11593.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14081312..14081671 17..378 99   Plus

BO11593.pep Sequence

Translation from 16 to 394

> BO11593.pep
MWTKSSVVIVAMALLASTGAQPVSQTEMEPMLINVTTSRPKLVIEEMEPM
RYHFVTEHRPTSLGQNYYIKPGQPVGSITLDSDTLQVRYDQDDGKPVASK
HNILFVAYAKDLAQKSRQRKASFLDH

BO11593.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12481-PB 120 CG12481-PB 1..120 1..120 613 100 Plus