Clone BO11601 Report

Search the DGRC for BO11601

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL48-RA
Protein status:BO11601.pep:
Sequenced Size:577

Clone Sequence Records

BO11601.3prime Sequence

575 bp (574 high quality bases) assembled on 2006-04-19

> BO11601.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCCTGGTGGTGGTGGGTCCGCCCATGC
GCTCCAGCTCGTCCTTCAGGTCGAGCAGCTCCTTGTCGGGCACGTAGCGC
CGCTCCTCGCAGTCGTCGGTGTACTCCTGCACCTGCAAGCTCACACCCTC
GGGCAGCGCCGCCTGGGCCAGGCGCAAGAACTGCGGATAGACTGGCGCAT
CCACATTGTTCAGCTGCAGGTTGCGCTCGTAGGTGGTCAGCTTGTACTCC
GATTCGATGACCGTGGAGTTGGGCCGCAGTCGCTGCACCGTGGTCTTTTG
CGGAGGGAGGGCGTAGCAGTCGGAGACGTCCAAGTCCAGGTACTCGGCCA
ATCCGTGCAGAAACCTCTGGTAGCTCTCCAGCTGCGGGTAGTCGTAGCCC
TTGATCTGCACATTCAGGCTCTCGTACTGCGGGAATTTCGGCTTGAGGGA
CTCCAGGTAATCCGGTTCGTAAACACTTCCACTGGTGCTCCTCACGGCTG
TTGTGGTTGCTTTGGGCACCTGCAGCGCCAGCCGCACACTTGGCAGTATC
CTGCGTAGCATGTCGACTGATAACT

BO11601.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17642-PA 546 mRpL48-RA 1..543 561..19 2715 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL48-RB 690 CG17642-RB 65..607 561..19 2715 100 Minus
mRpL48-RA 790 CG17642-RA 65..607 561..19 2715 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1710849..1711282 452..19 2170 100 Minus
2L 23513712 2L 1710598..1710697 550..451 500 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:51:32 has no hits.

BO11601.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:04 Download gff for BO11601.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17642-PA 1..546 18..561 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:31 Download gff for BO11601.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17642-PA 1..546 18..561 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:53:16 Download gff for BO11601.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 58..612 13..569 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:34 Download gff for BO11601.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 58..612 13..569 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:34 Download gff for BO11601.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1710590..1710697 451..558 96 -> Minus
2L 1710851..1711287 13..450 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:53:16 Download gff for BO11601.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1710590..1710697 451..558 96 -> Minus
arm_2L 1710851..1711287 13..450 99   Minus

BO11601.5prime Sequence

575 bp (574 high quality bases) assembled on 2006-04-19

> BO11601.5prime
GAAGTTATCAGTCGACATGCTACGCAGGATACTGCCAAGTGTGCGGCTGG
CGCTGCAGGTGCCCAAAGCAACCACAACAGCCGTGAGGAGCACCAGTGGA
AGTGTTTACGAACCGGATTACCTGGAGTCCCTCAAGCCGAAATTCCCGCA
GTACGAGAGCCTGAATGTGCAGATCAAGGGCTACGACTACCCGCAGCTGG
AGAGCTACCAGAGGTTTCTGCACGGATTGGCCGAGTACCTGGACTTGGAC
GTCTCCGACTGCTACGCCCTCCCTCCGCAAAAGACCACGGTGCAGCGACT
GCGGCCCAACTCCACGGTCATCGAATCGGAGTACAAGCTGACCACCTACG
AGCGCAACCTGCAGCTGAACAATGTGGATGCGCCAGTCTATCCGCAGTTC
TTGCGCCTGGCCCAGGCGGCGCTGCCCGAGGGTGTGAGCTTGCAGGTGCA
GGAGTACACCGACGACTGCGAGGAGCGGCGCTACGTGCCCGACAAGGAGC
TGCTCGACCTGAAGGACGAGCTGGAGCGCATGGGCGGACCCACCACCACC
AGGAAGAAGGCAAGCTTTCTAGACC

BO11601.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17642-PA 546 mRpL48-RA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL48-RB 690 CG17642-RB 65..607 17..559 2715 100 Plus
mRpL48-RA 790 CG17642-RA 65..607 17..559 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1710849..1711282 126..559 2170 100 Plus
2L 23513712 2L 1710598..1710697 28..127 500 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:45:05 has no hits.

BO11601.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:05 Download gff for BO11601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17642-PA 1..546 17..560 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:32 Download gff for BO11601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17642-PA 1..546 17..560 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:46:06 Download gff for BO11601.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 58..612 9..565 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:08:40 Download gff for BO11601.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 58..612 9..565 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:08:40 Download gff for BO11601.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1710590..1710697 20..127 96 -> Plus
2L 1710851..1711287 128..565 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:46:06 Download gff for BO11601.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1710590..1710697 20..127 96 -> Plus
arm_2L 1710851..1711287 128..565 99   Plus

BO11601.complete Sequence

577 bp assembled on 2007-06-22

GenBank Submission: FJ632121

> BO11601.complete
GAAGTTATCAGTCGACATGCTACGCAGGATACTGCCAAGTGTGCGGCTGG
CGCTGCAGGTGCCCAAAGCAACCACAACAGCCGTGAGGAGCACCAGTGGA
AGTGTTTACGAACCGGATTACCTGGAGTCCCTCAAGCCGAAATTCCCGCA
GTACGAGAGCCTGAATGTGCAGATCAAGGGCTACGACTACCCGCAGCTGG
AGAGCTACCAGAGGTTTCTGCACGGATTGGCCGAGTACCTGGACTTGGAC
GTCTCCGACTGCTACGCCCTCCCTCCGCAAAAGACCACGGTGCAGCGACT
GCGGCCCAACTCCACGGTCATCGAATCGGAGTACAAGCTGACCACCTACG
AGCGCAACCTGCAGCTGAACAATGTGGATGCGCCAGTCTATCCGCAGTTC
TTGCGCCTGGCCCAGGCGGCGCTGCCCGAGGGTGTGAGCTTGCAGGTGCA
GGAGTACACCGACGACTGCGAGGAGCGGCGCTACGTGCCCGACAAGGAGC
TGCTCGACCTGAAGGACGAGCTGGAGCGCATGGGCGGACCCACCACCACC
AGGAAGAAGGCAAGCTTTCTAGACCAT

BO11601.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL48-RB 546 CG17642-PB 1..543 17..559 2715 100 Plus
mRpL48-RA 546 CG17642-PA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL48-RB 690 CG17642-RB 65..607 17..559 2715 100 Plus
mRpL48-RA 790 CG17642-RA 65..607 17..559 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1710849..1711282 126..559 2170 100 Plus
2L 23513712 2L 1710598..1710697 28..127 500 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:11:28 has no hits.

BO11601.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:06 Download gff for BO11601.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 1..546 17..560 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:26 Download gff for BO11601.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 54..608 9..565 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:28 Download gff for BO11601.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 65..607 17..561 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:06 Download gff for BO11601.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 54..608 9..565 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:51 Download gff for BO11601.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 65..607 17..561 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:51 Download gff for BO11601.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1710590..1710697 20..127 96 -> Plus
2L 1710851..1711282 128..561 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:28 Download gff for BO11601.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1710590..1710697 20..127 96 -> Plus
arm_2L 1710851..1711282 128..561 99   Plus

BO11601.pep Sequence

Translation from 16 to 577

> BO11601.pep
MLRRILPSVRLALQVPKATTTAVRSTSGSVYEPDYLESLKPKFPQYESLN
VQIKGYDYPQLESYQRFLHGLAEYLDLDVSDCYALPPQKTTVQRLRPNST
VIESEYKLTTYERNLQLNNVDAPVYPQFLRLAQAALPEGVSLQVQEYTDD
CEERRYVPDKELLDLKDELERMGGPTTTRKKASFLDH

BO11601.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL48-PB 181 CG17642-PB 1..181 1..181 934 100 Plus
mRpL48-PA 181 CG17642-PA 1..181 1..181 934 100 Plus