Clone Sequence Records
BO11601.3prime Sequence
575 bp (574 high quality bases) assembled on 2006-04-19
> BO11601.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCCTGGTGGTGGTGGGTCCGCCCATGC
GCTCCAGCTCGTCCTTCAGGTCGAGCAGCTCCTTGTCGGGCACGTAGCGC
CGCTCCTCGCAGTCGTCGGTGTACTCCTGCACCTGCAAGCTCACACCCTC
GGGCAGCGCCGCCTGGGCCAGGCGCAAGAACTGCGGATAGACTGGCGCAT
CCACATTGTTCAGCTGCAGGTTGCGCTCGTAGGTGGTCAGCTTGTACTCC
GATTCGATGACCGTGGAGTTGGGCCGCAGTCGCTGCACCGTGGTCTTTTG
CGGAGGGAGGGCGTAGCAGTCGGAGACGTCCAAGTCCAGGTACTCGGCCA
ATCCGTGCAGAAACCTCTGGTAGCTCTCCAGCTGCGGGTAGTCGTAGCCC
TTGATCTGCACATTCAGGCTCTCGTACTGCGGGAATTTCGGCTTGAGGGA
CTCCAGGTAATCCGGTTCGTAAACACTTCCACTGGTGCTCCTCACGGCTG
TTGTGGTTGCTTTGGGCACCTGCAGCGCCAGCCGCACACTTGGCAGTATC
CTGCGTAGCATGTCGACTGATAACT
BO11601.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17642-PA | 546 | mRpL48-RA | 1..543 | 561..19 | 2715 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL48-RB | 690 | CG17642-RB | 65..607 | 561..19 | 2715 | 100 | Minus |
mRpL48-RA | 790 | CG17642-RA | 65..607 | 561..19 | 2715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1710849..1711282 | 452..19 | 2170 | 100 | Minus |
2L | 23513712 | 2L | 1710598..1710697 | 550..451 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:51:32 has no hits.
BO11601.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:04 Download gff for
BO11601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17642-PA | 1..546 | 18..561 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:31 Download gff for
BO11601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17642-PA | 1..546 | 18..561 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:53:16 Download gff for
BO11601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL48-RA | 58..612 | 13..569 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:34 Download gff for
BO11601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL48-RA | 58..612 | 13..569 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:34 Download gff for
BO11601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1710590..1710697 | 451..558 | 96 | -> | Minus |
2L | 1710851..1711287 | 13..450 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:53:16 Download gff for
BO11601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1710590..1710697 | 451..558 | 96 | -> | Minus |
arm_2L | 1710851..1711287 | 13..450 | 99 | | Minus |
BO11601.5prime Sequence
575 bp (574 high quality bases) assembled on 2006-04-19
> BO11601.5prime
GAAGTTATCAGTCGACATGCTACGCAGGATACTGCCAAGTGTGCGGCTGG
CGCTGCAGGTGCCCAAAGCAACCACAACAGCCGTGAGGAGCACCAGTGGA
AGTGTTTACGAACCGGATTACCTGGAGTCCCTCAAGCCGAAATTCCCGCA
GTACGAGAGCCTGAATGTGCAGATCAAGGGCTACGACTACCCGCAGCTGG
AGAGCTACCAGAGGTTTCTGCACGGATTGGCCGAGTACCTGGACTTGGAC
GTCTCCGACTGCTACGCCCTCCCTCCGCAAAAGACCACGGTGCAGCGACT
GCGGCCCAACTCCACGGTCATCGAATCGGAGTACAAGCTGACCACCTACG
AGCGCAACCTGCAGCTGAACAATGTGGATGCGCCAGTCTATCCGCAGTTC
TTGCGCCTGGCCCAGGCGGCGCTGCCCGAGGGTGTGAGCTTGCAGGTGCA
GGAGTACACCGACGACTGCGAGGAGCGGCGCTACGTGCCCGACAAGGAGC
TGCTCGACCTGAAGGACGAGCTGGAGCGCATGGGCGGACCCACCACCACC
AGGAAGAAGGCAAGCTTTCTAGACC
BO11601.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17642-PA | 546 | mRpL48-RA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:45:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL48-RB | 690 | CG17642-RB | 65..607 | 17..559 | 2715 | 100 | Plus |
mRpL48-RA | 790 | CG17642-RA | 65..607 | 17..559 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:45:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1710849..1711282 | 126..559 | 2170 | 100 | Plus |
2L | 23513712 | 2L | 1710598..1710697 | 28..127 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:45:05 has no hits.
BO11601.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:05 Download gff for
BO11601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17642-PA | 1..546 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:32 Download gff for
BO11601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17642-PA | 1..546 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:46:06 Download gff for
BO11601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL48-RA | 58..612 | 9..565 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:08:40 Download gff for
BO11601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL48-RA | 58..612 | 9..565 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:08:40 Download gff for
BO11601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1710590..1710697 | 20..127 | 96 | -> | Plus |
2L | 1710851..1711287 | 128..565 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:46:06 Download gff for
BO11601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1710590..1710697 | 20..127 | 96 | -> | Plus |
arm_2L | 1710851..1711287 | 128..565 | 99 | | Plus |
BO11601.complete Sequence
577 bp assembled on 2007-06-22
GenBank Submission: FJ632121
> BO11601.complete
GAAGTTATCAGTCGACATGCTACGCAGGATACTGCCAAGTGTGCGGCTGG
CGCTGCAGGTGCCCAAAGCAACCACAACAGCCGTGAGGAGCACCAGTGGA
AGTGTTTACGAACCGGATTACCTGGAGTCCCTCAAGCCGAAATTCCCGCA
GTACGAGAGCCTGAATGTGCAGATCAAGGGCTACGACTACCCGCAGCTGG
AGAGCTACCAGAGGTTTCTGCACGGATTGGCCGAGTACCTGGACTTGGAC
GTCTCCGACTGCTACGCCCTCCCTCCGCAAAAGACCACGGTGCAGCGACT
GCGGCCCAACTCCACGGTCATCGAATCGGAGTACAAGCTGACCACCTACG
AGCGCAACCTGCAGCTGAACAATGTGGATGCGCCAGTCTATCCGCAGTTC
TTGCGCCTGGCCCAGGCGGCGCTGCCCGAGGGTGTGAGCTTGCAGGTGCA
GGAGTACACCGACGACTGCGAGGAGCGGCGCTACGTGCCCGACAAGGAGC
TGCTCGACCTGAAGGACGAGCTGGAGCGCATGGGCGGACCCACCACCACC
AGGAAGAAGGCAAGCTTTCTAGACCAT
BO11601.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL48-RB | 546 | CG17642-PB | 1..543 | 17..559 | 2715 | 100 | Plus |
mRpL48-RA | 546 | CG17642-PA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL48-RB | 690 | CG17642-RB | 65..607 | 17..559 | 2715 | 100 | Plus |
mRpL48-RA | 790 | CG17642-RA | 65..607 | 17..559 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1710849..1711282 | 126..559 | 2170 | 100 | Plus |
2L | 23513712 | 2L | 1710598..1710697 | 28..127 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:11:28 has no hits.
BO11601.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:06 Download gff for
BO11601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL48-RA | 1..546 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:26 Download gff for
BO11601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL48-RA | 54..608 | 9..565 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:28 Download gff for
BO11601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL48-RA | 65..607 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:06 Download gff for
BO11601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL48-RA | 54..608 | 9..565 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:51 Download gff for
BO11601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL48-RA | 65..607 | 17..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:51 Download gff for
BO11601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1710590..1710697 | 20..127 | 96 | -> | Plus |
2L | 1710851..1711282 | 128..561 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:28 Download gff for
BO11601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1710590..1710697 | 20..127 | 96 | -> | Plus |
arm_2L | 1710851..1711282 | 128..561 | 99 | | Plus |
BO11601.pep Sequence
Translation from 16 to 577
> BO11601.pep
MLRRILPSVRLALQVPKATTTAVRSTSGSVYEPDYLESLKPKFPQYESLN
VQIKGYDYPQLESYQRFLHGLAEYLDLDVSDCYALPPQKTTVQRLRPNST
VIESEYKLTTYERNLQLNNVDAPVYPQFLRLAQAALPEGVSLQVQEYTDD
CEERRYVPDKELLDLKDELERMGGPTTTRKKASFLDH
BO11601.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL48-PB | 181 | CG17642-PB | 1..181 | 1..181 | 934 | 100 | Plus |
mRpL48-PA | 181 | CG17642-PA | 1..181 | 1..181 | 934 | 100 | Plus |