Clone Sequence Records
BO11603.5prime Sequence
374 bp (373 high quality bases) assembled on 2006-04-19
> BO11603.5prime
GAAGTTATCAGTCGACATGACCAAGAAGCGCCGTAACGGAGGACGCAACA
AGCACAATCGCGGCCATGTGAAGCCCGTGCGCTGCACCAACTGCGCCCGC
TGCGTGCCCAAGGACAAGGCAATCAAGAAGTTCGTCATCCGCAACATCGT
GGAGGCTGCCGCCGTGCGCGACATCACGGAGGCCAGCATCTGGGACTCGT
ACGTGCTGCCCAAGCTCTATGCGAAGCTCCACTACTGCGTGTCCTGCGCA
ATCCACTCCAAGGTGGTGCGCAACCGTTCGCGCGAGGCCCGCCGCATCCG
CACGCCGCCACTGCGTTCCTTCCCCAAGGACATGGCCCGCAACAACCAGA
ACAGGAAGGCAAGCTTTCTAGACC
BO11603.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10305-PA | 345 | RpS26-RA | 1..342 | 17..358 | 1710 | 100 | Plus |
| CG10305-PB | 345 | RpS26-RB | 1..342 | 17..358 | 1710 | 100 | Plus |
| CG10305-PC | 345 | RpS26-RC | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:49:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS26-RD | 1046 | CG10305-RD | 85..426 | 17..358 | 1710 | 100 | Plus |
| RpS26-RE | 1812 | CG10305-RE | 85..426 | 17..358 | 1710 | 100 | Plus |
| RpS26-RA | 640 | CG10305-RA | 85..426 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18442721..18443062 | 358..17 | 1710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:49:35 has no hits.
BO11603.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:09 Download gff for
BO11603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS26-PB | 1..345 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:38 Download gff for
BO11603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10305-PC | 1..345 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:46:28 Download gff for
BO11603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS26-RC | 85..426 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:15:32 Download gff for
BO11603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS26-RA | 85..426 | 17..358 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:15:32 Download gff for
BO11603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18442721..18443062 | 17..358 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:46:28 Download gff for
BO11603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18442721..18443062 | 17..358 | 100 | | Minus |
BO11603.3prime Sequence
374 bp (373 high quality bases) assembled on 2006-04-19
> BO11603.3prime
ATGGTCTAGAAAGCTTGCCTTCCTGTTCTGGTTGTTGCGGGCCATGTCCT
TGGGGAAGGAACGCAGTGGCGGCGTGCGGATGCGGCGGGCCTCGCGCGAA
CGGTTGCGCACCACCTTGGAGTGGATTGCGCAGGACACGCAGTAGTGGAG
CTTCGCATAGAGCTTGGGCAGCACGTACGAGTCCCAGATGCTGGCCTCCG
TGATGTCGCGCACGGCGGCAGCCTCCACGATGTTGCGGATGACGAACTTC
TTGATTGCCTTGTCCTTGGGCACGCAGCGGGCGCAGTTGGTGCAGCGCAC
GGGCTTCACATGGCCGCGATTGTGCTTGTTGCGTCCTCCGTTACGGCGCT
TCTTGGTCATGTCGACTGATAACT
BO11603.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10305-PA | 345 | RpS26-RA | 1..342 | 360..19 | 1710 | 100 | Minus |
| CG10305-PB | 345 | RpS26-RB | 1..342 | 360..19 | 1710 | 100 | Minus |
| CG10305-PC | 345 | RpS26-RC | 1..342 | 360..19 | 1710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:25:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS26-RD | 1046 | CG10305-RD | 85..426 | 360..19 | 1710 | 100 | Minus |
| RpS26-RE | 1812 | CG10305-RE | 85..426 | 360..19 | 1710 | 100 | Minus |
| RpS26-RA | 640 | CG10305-RA | 85..426 | 360..19 | 1710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 11:25:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18442721..18443062 | 19..360 | 1710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 11:25:41 has no hits.
BO11603.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:08 Download gff for
BO11603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS26-PB | 1..345 | 18..360 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:37 Download gff for
BO11603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10305-PC | 1..345 | 18..360 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:37:38 Download gff for
BO11603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS26-RC | 85..426 | 19..360 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:12:05 Download gff for
BO11603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS26-RA | 85..426 | 19..360 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:12:05 Download gff for
BO11603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18442721..18443062 | 19..360 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:37:38 Download gff for
BO11603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18442721..18443062 | 19..360 | 100 | | Plus |
BO11603.complete Sequence
376 bp assembled on 2006-10-11
GenBank Submission: FJ632122
> BO11603.complete
GAAGTTATCAGTCGACATGACCAAGAAGCGCCGTAACGGAGGACGCAACA
AGCACAATCGCGGCCATGTGAAGCCCGTGCGCTGCACCAACTGCGCCCGC
TGCGTGCCCAAGGACAAGGCAATCAAGAAGTTCGTCATCCGCAACATCGT
GGAGGCTGCCGCCGTGCGCGACATCACGGAGGCCAGCATCTGGGACTCGT
ACGTGCTGCCCAAGCTCTATGCGAAGCTCCACTACTGCGTGTCCTGCGCA
ATCCACTCCAAGGTGGTGCGCAACCGTTCGCGCGAGGCCCGCCGCATCCG
CACGCCGCCACTGCGTTCCTTCCCCAAGGACATGGCCCGCAACAACCAGA
ACAGGAAGGCAAGCTTTCTAGACCAT
BO11603.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:17:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS26-RD | 345 | CG10305-PD | 1..342 | 17..358 | 1710 | 100 | Plus |
| RpS26-RE | 345 | CG10305-PE | 1..342 | 17..358 | 1710 | 100 | Plus |
| RpS26-RA | 345 | CG10305-PA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:18:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS26-RD | 1046 | CG10305-RD | 85..426 | 17..358 | 1710 | 100 | Plus |
| RpS26-RE | 1812 | CG10305-RE | 85..426 | 17..358 | 1710 | 100 | Plus |
| RpS26-RA | 640 | CG10305-RA | 85..426 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:17:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18442721..18443062 | 358..17 | 1710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:17:58 has no hits.
BO11603.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:05 Download gff for
BO11603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS26-RC | 1..345 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:24 Download gff for
BO11603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS26-RB | 97..438 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:19 Download gff for
BO11603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS26-RC | 85..426 | 17..360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:05 Download gff for
BO11603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS26-RB | 97..438 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:46 Download gff for
BO11603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS26-RA | 85..426 | 17..360 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:46 Download gff for
BO11603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18442719..18443062 | 17..360 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:19 Download gff for
BO11603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18442719..18443062 | 17..360 | 99 | | Minus |
BO11603.pep Sequence
Translation from 16 to 376
> BO11603.pep
MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAV
RDITEASIWDSYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLR
SFPKDMARNNQNRKASFLDH
BO11603.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS26-PD | 114 | CG10305-PD | 1..114 | 1..114 | 607 | 100 | Plus |
| RpS26-PE | 114 | CG10305-PE | 1..114 | 1..114 | 607 | 100 | Plus |
| RpS26-PA | 114 | CG10305-PA | 1..114 | 1..114 | 607 | 100 | Plus |
| RpS26-PC | 114 | CG10305-PC | 1..114 | 1..114 | 607 | 100 | Plus |
| RpS26-PB | 114 | CG10305-PB | 1..114 | 1..114 | 607 | 100 | Plus |
