Clone BO11604 Report

Search the DGRC for BO11604

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:4
Vector:pDNR-Dual
Associated Gene/Transcriptppa-RA
Protein status:BO11604.pep: validated full length
Sequenced Size:1648

Clone Sequence Records

BO11604.3prime Sequence

887 bp (844 high quality bases) assembled on 2006-04-19

> BO11604.3prime
ATGGTCTAGAAAGCTTGCCCTGACCAGCCAGAGGCCCAGGTTGAGCTTCT
GCAGCTTGGGCAGCTTCATGATGATGTCGATGCCCTTGGAACTGAGTTGC
GTGCAGCCGTAGAGATCGATGGTCTTGAGATTAGTCAGATCCTCGGCCAG
CGTTTGCAGGCCCTTGTCCGTTATCCGGCTGCACTGTCCGATATTGAGGT
TCTCCAACTCGTGCAATGCCTTGGCGATCTTTAGCATGCCGTGATCGGTG
ATCTGGCACTGATTGAGGGACAGGGATCTCAGTCTGTAGAGTCCCTGGGC
TATGTGTGTCAGGGCCTGGTCGCTGATCTTGTCGCAGAAACTGACGTCCA
GCGAGTTGATCCCGCTGCCGCCTTCCGTGAGGTAGGCCATTCCGATATCC
GAGATGTTGTCGCAGGAGCGCAAGTTCAGCTGCTCGAGCTTGGGCATCCG
GGCCAGGTGCTTTAGTCCGCTGTCCGTCACCGAGACGCAGAAGCTCAGGT
TGATCGACTTCAGCGAGGTCAGGCCCTGGGCAATGTGGCCCAAAGCCTCG
TCGCTTAGCCGCTGGCAATCCTGCAGACCCAAGTACTCCAGCTGCAGGTT
GCCTTCGGCCGTTTCCCGCGAGAAACCAGCCAGGTGTCCGATTCCCTGGT
CGCTGATGTGCCAGCAGGAGCGCAGATTGAGGTGCTTCAGCTTCTTCAGG
CCCCACGCAATGAGCAGCAGTCCTGTGTTCGTGATGTTGCAACAGCCGCC
CAGTTCCAGGGTCTCAAGATTCCTTAGATGCTGGGCGATGCGCCCCAGAC
TCGTGTCCGTGATCTGTTTACAGAGGGAGAGGTCCAGTGTCTTGAGGTTG
GGCAGATCCACGCTAAAGGCATGGCCCAGGTTCATGT

BO11604.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9952-PA 1617 ppa-RA 746..1614 887..19 4320 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
Ppa-RC 4033 CG9952-RC 1012..1880 887..19 4330 99.9 Minus
Ppa-RB 3463 CG9952-RB 1012..1880 887..19 4330 99.9 Minus
Ppa-RA 3463 CG9952-RA 1012..1880 887..19 4330 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22687108..22687976 19..887 4330 99.9 Plus
Blast to na_te.dros performed on 2015-02-03 17:38:15 has no hits.

BO11604.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:10 Download gff for BO11604.3prime
Subject Subject Range Query Range Percent Splice Strand
ppa-PA 746..1617 16..887 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:40 Download gff for BO11604.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9952-PA 746..1617 16..887 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:36:40 Download gff for BO11604.3prime
Subject Subject Range Query Range Percent Splice Strand
ppa-RA 1012..1886 13..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:03:16 Download gff for BO11604.3prime
Subject Subject Range Query Range Percent Splice Strand
Ppa-RA 1012..1886 13..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:03:16 Download gff for BO11604.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22687102..22687976 13..887 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:36:40 Download gff for BO11604.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18574607..18575481 13..887 99   Plus

BO11604.5prime Sequence

801 bp (799 high quality bases) assembled on 2006-04-19

> BO11604.5prime
GAAGTTATCAGTCGACATGGCGACCAACACGGAGCTGCTGCCCTTCCATC
ATCAAACAATCGCGGTGTTGAACAATCTGAATAGCCACTGTGGCGGATCC
GGGAGCAACGGAGCGGCCACCAGTGGCGGCGCGGCGATTGGCGGAGCAGG
AGCCGGAGGAGCGCCCAGCTGGGCCATGGACGAACTCTATCAACAGACTG
AGCTGCCCGGTCTGACGCGAACCGGAGCCACCACCACCCACCACCACCTG
CTGCGCTTCACGCCCTACGCCCTGCACCACCGACCGCCGCACCACCAGCT
GCAGACCTTGCCGCCGGCCCTCTACTTGCAGCATGCCGCAGCAGCTGCGG
CGGCAGCGGCAGCAGCAGCGGCCCACGCCCAGCACCATCATCACCATCAC
CACCATCTCCCGCACAGACCAGCATCTCCGGAGAGCCCGCCGCCGGTGGA
GGGCACCCACATAAGCAACCTGTTCCCAGAACTCCTCGAGCAGATATTCG
AGCACCTACCAGTGAGGGATTTGGGTCGGGCAGCTCAGGTTTGCACCGCA
TGGCGGGATGCGGCCTATGCCAAGAGCGTTTGGAAGGGAGTCGAGGCCAA
GCTGCACCTTAAGCGTTCCAGTCCGAGCCTGTTCAACTGCCTGGTCAAGC
GCGGCATCAAGAAGGTGCAGATCCTATCGCTGCGCCGCTCGCTTAAGGAT
TTGGTCCTGGGCGTTCCGGCTCTGACCTCTCTGAACCTGAGCGGCTGCTT
CAACGTGGCGGACATGAACCTGGGCCATGCCTTTAGCGTGGATCTGCCAA
A

BO11604.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9952-PA 1617 ppa-RA 1..785 17..801 3925 100 Plus
CG1597-PA 2661 CG1597-RA 181..215 338..372 150 97.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
Ppa-RC 4033 CG9952-RC 267..1051 17..801 3925 100 Plus
Ppa-RB 3463 CG9952-RB 267..1051 17..801 3925 100 Plus
Ppa-RA 3463 CG9952-RA 267..1051 17..801 3925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22687937..22688721 801..17 3925 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:10:53 has no hits.

BO11604.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:11 Download gff for BO11604.5prime
Subject Subject Range Query Range Percent Splice Strand
ppa-PA 1..782 17..798 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:41 Download gff for BO11604.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9952-PA 1..782 17..798 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:56:20 Download gff for BO11604.5prime
Subject Subject Range Query Range Percent Splice Strand
ppa-RA 259..1048 10..798 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:28:16 Download gff for BO11604.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppa-RA 259..1048 10..798 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:28:16 Download gff for BO11604.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22687940..22688726 10..798 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:56:20 Download gff for BO11604.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18575445..18576231 10..798 99   Minus

BO11604.complete Sequence

1648 bp assembled on 2007-06-22

GenBank Submission: FJ632123

> BO11604.complete
GAAGTTATCAGTCGACATGGCGACCAACACGGAGCTGCTGCCCTTCCATC
ATCAAACAATCGCGGTGTTGAACAATCTGAATAGCCACTGTGGCGGATCC
GGGAGCAACGGAGCGGCCACCAGTGGCGGCGCGGCGATTGGCGGAGCAGG
AGCCGGAGGAGCGCCCAGCTGGGCCATGGACGAACTCTATCAACAGACTG
AGCTGCCCGGTCTGACGCGAACCGGAGCCACCACCACCCACCACCACCTG
CTGCGCTTCACGCCCTACGCCCTGCACCACCGACCGCCGCACCACCAGCT
GCAGACCTTGCCGCCGGCCCTCTACTTGCAGCATGCCGCAGCAGCTGCGG
CGGCAGCGGCAGCAGCAGCGGCCCACGCCCAGCACCATCATCACCATCAC
CACCATCTCCCGCACAGACCAGCATCTCCGGAGAGCCCGCCGCCGGTGGA
GGGCACCCACATAAGCAACCTGTTCCCAGAACTCCTCGAGCAGATATTCG
AGCACCTACCAGTGAGGGATTTGGGTCGGGCAGCTCAGGTTTGCACCGCA
TGGCGGGATGCGGCCTATGCCAAGAGCGTTTGGAAGGGAGTCGAGGCCAA
GCTGCACCTTAAGCGTTCCAGTCCGAGCCTGTTCAACTGCCTGGTCAAGC
GCGGCATCAAGAAGGTGCAGATCCTATCGCTGCGCCGCTCGCTTAAGGAT
TTGGTCCTGGGCGTTCCGGCTCTGACCTCTCTGAACCTGAGCGGCTGCTT
CAACGTGGCGGACATGAACCTGGGCCATGCCTTTAGCGTGGATCTGCCAA
ACCTCAAGACACTGGACCTCTCCCTCTGTAAACAGATCACGGACACGAGT
CTGGGGCGCATCGCCCAGCATCTAAGGAATCTTGAGACCCTGGAACTGGG
CGGCTGTTGCAACATCACGAACACAGGACTGCTGCTCATTGCGTGGGGCC
TGAAGAAGCTGAAGCACCTCAATCTGCGCTCCTGCTGGCACATCAGCGAC
CAGGGAATCGGACACCTGGCTGGTTTCTCGCGGGAAACGGCCGAAGGCAA
CCTGCAGCTGGAGTACTTGGGTCTGCAGGATTGCCAGCGGCTAAGCGACG
AGGCTTTGGGCCACATTGCCCAGGGCCTGACCTCGCTGAAGTCGATCAAC
CTGAGCTTCTGCGTCTCGGTGACGGACAGCGGACTAAAGCACCTGGCCCG
GATGCCCAAGCTCGAGCAGCTGAACTTGCGCTCCTGCGACAACATCTCGG
ATATCGGAATGGCCTACCTCACGGAAGGCGGCAGCGGGATCAACTCGCTG
GACGTCAGTTTCTGCGACAAGATCAGCGACCAGGCCCTGACACACATAGC
CCAGGGACTCTACAGACTGAGATCCCTGTCCCTCAATCAGTGCCAGATCA
CCGATCACGGCATGCTAAAGATCGCCAAGGCATTGCACGAGTTGGAGAAC
CTCAATATCGGACAGTGCAGCCGGATAACGGACAAGGGCCTGCAAACGCT
GGCCGAGGATCTGACTAATCTCAAGACCATCGATCTCTACGGCTGCACGC
AACTCAGTTCCAAGGGCATCGACATCATCATGAAGCTGCCCAAGCTGCAG
AAGCTCAACCTGGGCCTCTGGCTGGTCAGGGCAAGCTTTCTAGACCAT

BO11604.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
Ppa-RC 1617 CG9952-PC 1..1614 17..1630 8070 100 Plus
Ppa-RB 1689 CG9952-PB 1..1614 17..1630 8070 100 Plus
Ppa-RA 1617 CG9952-PA 1..1614 17..1630 8070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
Ppa-RC 4033 CG9952-RC 267..1880 17..1630 8070 100 Plus
Ppa-RB 3463 CG9952-RB 267..1880 17..1630 8070 100 Plus
Ppa-RA 3463 CG9952-RA 267..1880 17..1630 8070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22687108..22688721 1630..17 8070 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:14:29 has no hits.

BO11604.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:37 Download gff for BO11604.complete
Subject Subject Range Query Range Percent Splice Strand
ppa-RA 1..1617 17..1633 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:23 Download gff for BO11604.complete
Subject Subject Range Query Range Percent Splice Strand
ppa-RA 245..1872 10..1636 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:50 Download gff for BO11604.complete
Subject Subject Range Query Range Percent Splice Strand
ppa-RA 267..1880 17..1632 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:37 Download gff for BO11604.complete
Subject Subject Range Query Range Percent Splice Strand
ppa-RA 245..1872 10..1636 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:40 Download gff for BO11604.complete
Subject Subject Range Query Range Percent Splice Strand
Ppa-RA 267..1880 17..1632 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:40 Download gff for BO11604.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22687105..22688721 17..1632 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:50 Download gff for BO11604.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18574610..18576226 17..1632 99   Minus

BO11604.pep Sequence

Translation from 16 to 1648

> BO11604.pep
MATNTELLPFHHQTIAVLNNLNSHCGGSGSNGAATSGGAAIGGAGAGGAP
SWAMDELYQQTELPGLTRTGATTTHHHLLRFTPYALHHRPPHHQLQTLPP
ALYLQHAAAAAAAAAAAAAHAQHHHHHHHHLPHRPASPESPPPVEGTHIS
NLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKSVWKGVEAKLHLKR
SSPSLFNCLVKRGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADM
NLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNI
TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY
LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLE
QLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYR
LRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLT
NLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNLGLWLVRASFLDH

BO11604.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
Ppa-PC 538 CG9952-PC 1..538 1..538 2826 100 Plus
Ppa-PB 562 CG9952-PB 1..538 1..538 2826 100 Plus
Ppa-PA 538 CG9952-PA 1..538 1..538 2826 100 Plus
CG32085-PA 666 CG32085-PA 227..641 108..532 390 28.9 Plus
CG9003-PC 426 CG9003-PC 15..376 149..532 370 27.8 Plus
CG32085-PA 666 CG32085-PA 482..657 235..420 226 32.3 Plus