Clone Sequence Records
BO11604.3prime Sequence
887 bp (844 high quality bases) assembled on 2006-04-19
> BO11604.3prime
ATGGTCTAGAAAGCTTGCCCTGACCAGCCAGAGGCCCAGGTTGAGCTTCT
GCAGCTTGGGCAGCTTCATGATGATGTCGATGCCCTTGGAACTGAGTTGC
GTGCAGCCGTAGAGATCGATGGTCTTGAGATTAGTCAGATCCTCGGCCAG
CGTTTGCAGGCCCTTGTCCGTTATCCGGCTGCACTGTCCGATATTGAGGT
TCTCCAACTCGTGCAATGCCTTGGCGATCTTTAGCATGCCGTGATCGGTG
ATCTGGCACTGATTGAGGGACAGGGATCTCAGTCTGTAGAGTCCCTGGGC
TATGTGTGTCAGGGCCTGGTCGCTGATCTTGTCGCAGAAACTGACGTCCA
GCGAGTTGATCCCGCTGCCGCCTTCCGTGAGGTAGGCCATTCCGATATCC
GAGATGTTGTCGCAGGAGCGCAAGTTCAGCTGCTCGAGCTTGGGCATCCG
GGCCAGGTGCTTTAGTCCGCTGTCCGTCACCGAGACGCAGAAGCTCAGGT
TGATCGACTTCAGCGAGGTCAGGCCCTGGGCAATGTGGCCCAAAGCCTCG
TCGCTTAGCCGCTGGCAATCCTGCAGACCCAAGTACTCCAGCTGCAGGTT
GCCTTCGGCCGTTTCCCGCGAGAAACCAGCCAGGTGTCCGATTCCCTGGT
CGCTGATGTGCCAGCAGGAGCGCAGATTGAGGTGCTTCAGCTTCTTCAGG
CCCCACGCAATGAGCAGCAGTCCTGTGTTCGTGATGTTGCAACAGCCGCC
CAGTTCCAGGGTCTCAAGATTCCTTAGATGCTGGGCGATGCGCCCCAGAC
TCGTGTCCGTGATCTGTTTACAGAGGGAGAGGTCCAGTGTCTTGAGGTTG
GGCAGATCCACGCTAAAGGCATGGCCCAGGTTCATGT
BO11604.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9952-PA | 1617 | ppa-RA | 746..1614 | 887..19 | 4320 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:38:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppa-RC | 4033 | CG9952-RC | 1012..1880 | 887..19 | 4330 | 99.9 | Minus |
Ppa-RB | 3463 | CG9952-RB | 1012..1880 | 887..19 | 4330 | 99.9 | Minus |
Ppa-RA | 3463 | CG9952-RA | 1012..1880 | 887..19 | 4330 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22687108..22687976 | 19..887 | 4330 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-03 17:38:15 has no hits.
BO11604.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:10 Download gff for
BO11604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppa-PA | 746..1617 | 16..887 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:40 Download gff for
BO11604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9952-PA | 746..1617 | 16..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:36:40 Download gff for
BO11604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppa-RA | 1012..1886 | 13..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:03:16 Download gff for
BO11604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppa-RA | 1012..1886 | 13..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:03:16 Download gff for
BO11604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22687102..22687976 | 13..887 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:36:40 Download gff for
BO11604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18574607..18575481 | 13..887 | 99 | | Plus |
BO11604.5prime Sequence
801 bp (799 high quality bases) assembled on 2006-04-19
> BO11604.5prime
GAAGTTATCAGTCGACATGGCGACCAACACGGAGCTGCTGCCCTTCCATC
ATCAAACAATCGCGGTGTTGAACAATCTGAATAGCCACTGTGGCGGATCC
GGGAGCAACGGAGCGGCCACCAGTGGCGGCGCGGCGATTGGCGGAGCAGG
AGCCGGAGGAGCGCCCAGCTGGGCCATGGACGAACTCTATCAACAGACTG
AGCTGCCCGGTCTGACGCGAACCGGAGCCACCACCACCCACCACCACCTG
CTGCGCTTCACGCCCTACGCCCTGCACCACCGACCGCCGCACCACCAGCT
GCAGACCTTGCCGCCGGCCCTCTACTTGCAGCATGCCGCAGCAGCTGCGG
CGGCAGCGGCAGCAGCAGCGGCCCACGCCCAGCACCATCATCACCATCAC
CACCATCTCCCGCACAGACCAGCATCTCCGGAGAGCCCGCCGCCGGTGGA
GGGCACCCACATAAGCAACCTGTTCCCAGAACTCCTCGAGCAGATATTCG
AGCACCTACCAGTGAGGGATTTGGGTCGGGCAGCTCAGGTTTGCACCGCA
TGGCGGGATGCGGCCTATGCCAAGAGCGTTTGGAAGGGAGTCGAGGCCAA
GCTGCACCTTAAGCGTTCCAGTCCGAGCCTGTTCAACTGCCTGGTCAAGC
GCGGCATCAAGAAGGTGCAGATCCTATCGCTGCGCCGCTCGCTTAAGGAT
TTGGTCCTGGGCGTTCCGGCTCTGACCTCTCTGAACCTGAGCGGCTGCTT
CAACGTGGCGGACATGAACCTGGGCCATGCCTTTAGCGTGGATCTGCCAA
A
BO11604.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9952-PA | 1617 | ppa-RA | 1..785 | 17..801 | 3925 | 100 | Plus |
CG1597-PA | 2661 | CG1597-RA | 181..215 | 338..372 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppa-RC | 4033 | CG9952-RC | 267..1051 | 17..801 | 3925 | 100 | Plus |
Ppa-RB | 3463 | CG9952-RB | 267..1051 | 17..801 | 3925 | 100 | Plus |
Ppa-RA | 3463 | CG9952-RA | 267..1051 | 17..801 | 3925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22687937..22688721 | 801..17 | 3925 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:10:53 has no hits.
BO11604.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:11 Download gff for
BO11604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppa-PA | 1..782 | 17..798 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:41 Download gff for
BO11604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9952-PA | 1..782 | 17..798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:56:20 Download gff for
BO11604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppa-RA | 259..1048 | 10..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:28:16 Download gff for
BO11604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppa-RA | 259..1048 | 10..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:28:16 Download gff for
BO11604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22687940..22688726 | 10..798 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:56:20 Download gff for
BO11604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18575445..18576231 | 10..798 | 99 | | Minus |
BO11604.complete Sequence
1648 bp assembled on 2007-06-22
GenBank Submission: FJ632123
> BO11604.complete
GAAGTTATCAGTCGACATGGCGACCAACACGGAGCTGCTGCCCTTCCATC
ATCAAACAATCGCGGTGTTGAACAATCTGAATAGCCACTGTGGCGGATCC
GGGAGCAACGGAGCGGCCACCAGTGGCGGCGCGGCGATTGGCGGAGCAGG
AGCCGGAGGAGCGCCCAGCTGGGCCATGGACGAACTCTATCAACAGACTG
AGCTGCCCGGTCTGACGCGAACCGGAGCCACCACCACCCACCACCACCTG
CTGCGCTTCACGCCCTACGCCCTGCACCACCGACCGCCGCACCACCAGCT
GCAGACCTTGCCGCCGGCCCTCTACTTGCAGCATGCCGCAGCAGCTGCGG
CGGCAGCGGCAGCAGCAGCGGCCCACGCCCAGCACCATCATCACCATCAC
CACCATCTCCCGCACAGACCAGCATCTCCGGAGAGCCCGCCGCCGGTGGA
GGGCACCCACATAAGCAACCTGTTCCCAGAACTCCTCGAGCAGATATTCG
AGCACCTACCAGTGAGGGATTTGGGTCGGGCAGCTCAGGTTTGCACCGCA
TGGCGGGATGCGGCCTATGCCAAGAGCGTTTGGAAGGGAGTCGAGGCCAA
GCTGCACCTTAAGCGTTCCAGTCCGAGCCTGTTCAACTGCCTGGTCAAGC
GCGGCATCAAGAAGGTGCAGATCCTATCGCTGCGCCGCTCGCTTAAGGAT
TTGGTCCTGGGCGTTCCGGCTCTGACCTCTCTGAACCTGAGCGGCTGCTT
CAACGTGGCGGACATGAACCTGGGCCATGCCTTTAGCGTGGATCTGCCAA
ACCTCAAGACACTGGACCTCTCCCTCTGTAAACAGATCACGGACACGAGT
CTGGGGCGCATCGCCCAGCATCTAAGGAATCTTGAGACCCTGGAACTGGG
CGGCTGTTGCAACATCACGAACACAGGACTGCTGCTCATTGCGTGGGGCC
TGAAGAAGCTGAAGCACCTCAATCTGCGCTCCTGCTGGCACATCAGCGAC
CAGGGAATCGGACACCTGGCTGGTTTCTCGCGGGAAACGGCCGAAGGCAA
CCTGCAGCTGGAGTACTTGGGTCTGCAGGATTGCCAGCGGCTAAGCGACG
AGGCTTTGGGCCACATTGCCCAGGGCCTGACCTCGCTGAAGTCGATCAAC
CTGAGCTTCTGCGTCTCGGTGACGGACAGCGGACTAAAGCACCTGGCCCG
GATGCCCAAGCTCGAGCAGCTGAACTTGCGCTCCTGCGACAACATCTCGG
ATATCGGAATGGCCTACCTCACGGAAGGCGGCAGCGGGATCAACTCGCTG
GACGTCAGTTTCTGCGACAAGATCAGCGACCAGGCCCTGACACACATAGC
CCAGGGACTCTACAGACTGAGATCCCTGTCCCTCAATCAGTGCCAGATCA
CCGATCACGGCATGCTAAAGATCGCCAAGGCATTGCACGAGTTGGAGAAC
CTCAATATCGGACAGTGCAGCCGGATAACGGACAAGGGCCTGCAAACGCT
GGCCGAGGATCTGACTAATCTCAAGACCATCGATCTCTACGGCTGCACGC
AACTCAGTTCCAAGGGCATCGACATCATCATGAAGCTGCCCAAGCTGCAG
AAGCTCAACCTGGGCCTCTGGCTGGTCAGGGCAAGCTTTCTAGACCAT
BO11604.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppa-RC | 1617 | CG9952-PC | 1..1614 | 17..1630 | 8070 | 100 | Plus |
Ppa-RB | 1689 | CG9952-PB | 1..1614 | 17..1630 | 8070 | 100 | Plus |
Ppa-RA | 1617 | CG9952-PA | 1..1614 | 17..1630 | 8070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppa-RC | 4033 | CG9952-RC | 267..1880 | 17..1630 | 8070 | 100 | Plus |
Ppa-RB | 3463 | CG9952-RB | 267..1880 | 17..1630 | 8070 | 100 | Plus |
Ppa-RA | 3463 | CG9952-RA | 267..1880 | 17..1630 | 8070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:14:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22687108..22688721 | 1630..17 | 8070 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:14:29 has no hits.
BO11604.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:37 Download gff for
BO11604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppa-RA | 1..1617 | 17..1633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:23 Download gff for
BO11604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppa-RA | 245..1872 | 10..1636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:50 Download gff for
BO11604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppa-RA | 267..1880 | 17..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:37 Download gff for
BO11604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ppa-RA | 245..1872 | 10..1636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:40 Download gff for
BO11604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppa-RA | 267..1880 | 17..1632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:40 Download gff for
BO11604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22687105..22688721 | 17..1632 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:50 Download gff for
BO11604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18574610..18576226 | 17..1632 | 99 | | Minus |
BO11604.pep Sequence
Translation from 16 to 1648
> BO11604.pep
MATNTELLPFHHQTIAVLNNLNSHCGGSGSNGAATSGGAAIGGAGAGGAP
SWAMDELYQQTELPGLTRTGATTTHHHLLRFTPYALHHRPPHHQLQTLPP
ALYLQHAAAAAAAAAAAAAHAQHHHHHHHHLPHRPASPESPPPVEGTHIS
NLFPELLEQIFEHLPVRDLGRAAQVCTAWRDAAYAKSVWKGVEAKLHLKR
SSPSLFNCLVKRGIKKVQILSLRRSLKDLVLGVPALTSLNLSGCFNVADM
NLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNI
TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY
LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLE
QLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYR
LRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLT
NLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNLGLWLVRASFLDH
BO11604.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppa-PC | 538 | CG9952-PC | 1..538 | 1..538 | 2826 | 100 | Plus |
Ppa-PB | 562 | CG9952-PB | 1..538 | 1..538 | 2826 | 100 | Plus |
Ppa-PA | 538 | CG9952-PA | 1..538 | 1..538 | 2826 | 100 | Plus |
CG32085-PA | 666 | CG32085-PA | 227..641 | 108..532 | 390 | 28.9 | Plus |
CG9003-PC | 426 | CG9003-PC | 15..376 | 149..532 | 370 | 27.8 | Plus |
CG32085-PA | 666 | CG32085-PA | 482..657 | 235..420 | 226 | 32.3 | Plus |