Clone BO11605 Report

Search the DGRC for BO11605

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG14454-RA
Protein status:BO11605.pep: validated full length
Sequenced Size:394

Clone Sequence Records

BO11605.5prime Sequence

392 bp (391 high quality bases) assembled on 2006-04-19

> BO11605.5prime
GAAGTTATCAGTCGACATGCGCTTCCTATTCGCTCTACTTCTCAGCGTGC
TCCTGTGTCTGCTCCTGGCTCAGGAGGGCAGTAGCAGCACATCTACATCC
TCGACGGCGACCACATCCACCGACTCCTCTGCCACCACTACCACGGCTTC
ATCCGCCACCACCACTACCACCACTGCCTCCTCCGCATCCACCACGACCA
CTGCCTCCTCTTCCTCCTCCTCGGCGGAGGCCAGGAGGCGCAGACGTGCT
CGCCGTCGTCGCCTGGCTCGTGAGCGCCGTCGTCGCCAGGAGCGGAGACA
GCGCCAGGAAAAGAGGAGGCGCAGGATGGAGCAGCTGCTGGTGAGGCAGC
GTCGCCTGATCAATCAGCTTCAGGGAGCAAGCTTTCTAGACC

BO11605.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14454-PA 363 CG14454-RA 1..360 17..376 1800 100 Plus
CG32453-PA 363 CG32453-RA 1..360 17..376 1775 99.7 Plus
CG12546-PA 390 CG12546-RA 91..182 71..162 385 96.7 Plus
CG14452-PA 354 CG14452-RA 55..146 71..162 385 96.7 Plus
CG12546-PA 390 CG12546-RA 176..227 159..210 235 98 Plus
CG14452-PA 354 CG14452-RA 140..191 159..210 235 98 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14454-RB 445 CG14454-RB 17..376 17..376 1800 100 Plus
CG14454-RA 855 CG14454-RA 17..376 17..376 1800 100 Plus
CG32453-RB 741 CG32453-RB 18..377 17..376 1785 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22692153..22692512 376..17 1800 100 Minus
3L 28110227 3L 22697247..22697606 17..376 1785 99.7 Plus
3L 28110227 3L 22693532..22693735 274..71 665 90.3 Minus
3L 28110227 3L 22696024..22696227 71..274 665 90.3 Plus
Blast to na_te.dros performed on 2015-02-12 00:58:19 has no hits.

BO11605.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:13 Download gff for BO11605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14454-PA 1..363 17..380 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:44 Download gff for BO11605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14454-PA 1..363 17..380 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:17:52 Download gff for BO11605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 10..380 9..381 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:40:23 Download gff for BO11605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 10..380 9..381 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:40:23 Download gff for BO11605.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22692149..22692515 16..381 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:17:52 Download gff for BO11605.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22685249..22685615 16..381 98 -> Minus

BO11605.3prime Sequence

392 bp (391 high quality bases) assembled on 2006-04-19

> BO11605.3prime
ATGGTCTAGAAAGCTTGCTCCCTGAAGCTGATTGATCAGGCGACGCTGCC
TCACCAGCAGCTGCTCCATCCTGCGCCTCCTCTTTTCCTGGCGCTGTCTC
CGCTCCTGGCGACGACGGCGCTCACGAGCCAGGCGACGACGGCGAGCACG
TCTGCGCCTCCTGGCCTCCGCCGAGGAGGAGGAAGAGGAGGCAGTGGTCG
TGGTGGATGCGGAGGAGGCAGTGGTGGTAGTGGTGGTGGCGGATGAAGCC
GTGGTAGTGGTGGCAGAGGAGTCGGTGGATGTGGTCGCCGTCGAGGATGT
AGATGTGCTGCTACTGCCCTCCTGAGCCAGGAGCAGACACAGGAGCACGC
TGAGAAGTAGAGCGAATAGGAAGCGCATGTCGACTGATAACT

BO11605.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14454-PA 363 CG14454-RA 1..360 378..19 1800 100 Minus
CG32453-PA 363 CG32453-RA 1..360 378..19 1775 99.7 Minus
CG12546-PA 390 CG12546-RA 91..182 324..233 385 96.7 Minus
CG14452-PA 354 CG14452-RA 55..146 324..233 385 96.7 Minus
CG12546-PA 390 CG12546-RA 176..227 236..185 235 98 Minus
CG14452-PA 354 CG14452-RA 140..191 236..185 235 98 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14454-RB 445 CG14454-RB 17..376 378..19 1800 100 Minus
CG14454-RA 855 CG14454-RA 17..376 378..19 1800 100 Minus
CG32453-RB 741 CG32453-RB 18..377 378..19 1785 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22692153..22692512 19..378 1800 100 Plus
3L 28110227 3L 22697247..22697606 378..19 1785 99.7 Minus
3L 28110227 3L 22693532..22693735 121..324 665 90.3 Plus
3L 28110227 3L 22696024..22696227 324..121 665 90.3 Minus
Blast to na_te.dros performed on 2015-02-04 10:39:10 has no hits.

BO11605.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:12 Download gff for BO11605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14454-PA 1..363 15..378 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:42 Download gff for BO11605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14454-PA 1..363 15..378 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:27:29 Download gff for BO11605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 10..380 14..386 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:38:36 Download gff for BO11605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 10..380 14..386 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:38:36 Download gff for BO11605.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22692149..22692515 14..379 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:27:29 Download gff for BO11605.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22685249..22685615 14..379 98 -> Plus

BO11605.complete Sequence

394 bp assembled on 2006-10-11

GenBank Submission: FJ632124

> BO11605.complete
GAAGTTATCAGTCGACATGCGCTTCCTATTCGCTCTACTTCTCAGCGTGC
TCCTGTGTCTGCTCCTGGCTCAGGAGGGCAGTAGCAGCACATCTACATCC
TCGACGGCGACCACATCCACCGACTCCTCTGCCACCACTACCACGGCTTC
ATCCGCCACCACCACTACCACCACTGCCTCCTCCGCATCCACCACGACCA
CTGCCTCCTCTTCCTCCTCCTCGGCGGAGGCCAGGAGGCGCAGACGTGCT
CGCCGTCGTCGCCTGGCTCGTGAGCGCCGTCGTCGCCAGGAGCGGAGACA
GCGCCAGGAAAAGAGGAGGCGCAGGATGGAGCAGCTGCTGGTGAGGCAGC
GTCGCCTGATCAATCAGCTTCAGGGAGCAAGCTTTCTAGACCAT

BO11605.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14454-RB 363 CG14454-PB 1..360 17..376 1800 100 Plus
CG14454-RA 363 CG14454-PA 1..360 17..376 1800 100 Plus
CG32453-RB 363 CG32453-PB 1..360 17..376 1785 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14454-RB 445 CG14454-RB 17..376 17..376 1800 100 Plus
CG14454-RA 855 CG14454-RA 17..376 17..376 1800 100 Plus
CG32453-RB 741 CG32453-RB 18..377 17..376 1785 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22692153..22692512 376..17 1800 100 Minus
3L 28110227 3L 22697247..22697606 17..376 1785 99.7 Plus
3L 28110227 3L 22693532..22693735 274..71 665 90.3 Minus
3L 28110227 3L 22696024..22696227 71..274 665 90.3 Plus
Blast to na_te.dros performed on 2014-11-27 14:22:47 has no hits.

BO11605.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:24 Download gff for BO11605.complete
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 1..363 17..380 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:53 Download gff for BO11605.complete
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 2..372 9..381 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:26 Download gff for BO11605.complete
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 17..376 17..378 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:25 Download gff for BO11605.complete
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 2..372 9..381 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:08 Download gff for BO11605.complete
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 17..376 17..378 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:08 Download gff for BO11605.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22692151..22692512 17..378 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:26 Download gff for BO11605.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22685251..22685612 17..378 99   Minus

BO11605.pep Sequence

Translation from 16 to 394

> BO11605.pep
MRFLFALLLSVLLCLLLAQEGSSSTSTSSTATTSTDSSATTTTASSATTT
TTTASSASTTTTASSSSSSAEARRRRRARRRRLARERRRRQERRQRQEKR
RRRMEQLLVRQRRLINQLQGASFLDH

BO11605.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG32453-PB 120 CG32453-PB 1..120 1..120 559 100 Plus
CG32453-PA 120 CG32453-PA 1..120 1..120 559 100 Plus
CG14454-PB 120 CG14454-PB 1..120 1..120 559 100 Plus
CG14454-PA 120 CG14454-PA 1..120 1..120 559 100 Plus
CG14452-PA 117 CG14452-PA 1..117 1..120 408 74.2 Plus