Clone Sequence Records
BO11605.5prime Sequence
392 bp (391 high quality bases) assembled on 2006-04-19
> BO11605.5prime
GAAGTTATCAGTCGACATGCGCTTCCTATTCGCTCTACTTCTCAGCGTGC
TCCTGTGTCTGCTCCTGGCTCAGGAGGGCAGTAGCAGCACATCTACATCC
TCGACGGCGACCACATCCACCGACTCCTCTGCCACCACTACCACGGCTTC
ATCCGCCACCACCACTACCACCACTGCCTCCTCCGCATCCACCACGACCA
CTGCCTCCTCTTCCTCCTCCTCGGCGGAGGCCAGGAGGCGCAGACGTGCT
CGCCGTCGTCGCCTGGCTCGTGAGCGCCGTCGTCGCCAGGAGCGGAGACA
GCGCCAGGAAAAGAGGAGGCGCAGGATGGAGCAGCTGCTGGTGAGGCAGC
GTCGCCTGATCAATCAGCTTCAGGGAGCAAGCTTTCTAGACC
BO11605.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14454-PA | 363 | CG14454-RA | 1..360 | 17..376 | 1800 | 100 | Plus |
CG32453-PA | 363 | CG32453-RA | 1..360 | 17..376 | 1775 | 99.7 | Plus |
CG12546-PA | 390 | CG12546-RA | 91..182 | 71..162 | 385 | 96.7 | Plus |
CG14452-PA | 354 | CG14452-RA | 55..146 | 71..162 | 385 | 96.7 | Plus |
CG12546-PA | 390 | CG12546-RA | 176..227 | 159..210 | 235 | 98 | Plus |
CG14452-PA | 354 | CG14452-RA | 140..191 | 159..210 | 235 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14454-RB | 445 | CG14454-RB | 17..376 | 17..376 | 1800 | 100 | Plus |
CG14454-RA | 855 | CG14454-RA | 17..376 | 17..376 | 1800 | 100 | Plus |
CG32453-RB | 741 | CG32453-RB | 18..377 | 17..376 | 1785 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22692153..22692512 | 376..17 | 1800 | 100 | Minus |
3L | 28110227 | 3L | 22697247..22697606 | 17..376 | 1785 | 99.7 | Plus |
3L | 28110227 | 3L | 22693532..22693735 | 274..71 | 665 | 90.3 | Minus |
3L | 28110227 | 3L | 22696024..22696227 | 71..274 | 665 | 90.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:58:19 has no hits.
BO11605.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:13 Download gff for
BO11605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-PA | 1..363 | 17..380 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:44 Download gff for
BO11605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-PA | 1..363 | 17..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:17:52 Download gff for
BO11605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 10..380 | 9..381 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:40:23 Download gff for
BO11605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 10..380 | 9..381 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:40:23 Download gff for
BO11605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22692149..22692515 | 16..381 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:17:52 Download gff for
BO11605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22685249..22685615 | 16..381 | 98 | -> | Minus |
BO11605.3prime Sequence
392 bp (391 high quality bases) assembled on 2006-04-19
> BO11605.3prime
ATGGTCTAGAAAGCTTGCTCCCTGAAGCTGATTGATCAGGCGACGCTGCC
TCACCAGCAGCTGCTCCATCCTGCGCCTCCTCTTTTCCTGGCGCTGTCTC
CGCTCCTGGCGACGACGGCGCTCACGAGCCAGGCGACGACGGCGAGCACG
TCTGCGCCTCCTGGCCTCCGCCGAGGAGGAGGAAGAGGAGGCAGTGGTCG
TGGTGGATGCGGAGGAGGCAGTGGTGGTAGTGGTGGTGGCGGATGAAGCC
GTGGTAGTGGTGGCAGAGGAGTCGGTGGATGTGGTCGCCGTCGAGGATGT
AGATGTGCTGCTACTGCCCTCCTGAGCCAGGAGCAGACACAGGAGCACGC
TGAGAAGTAGAGCGAATAGGAAGCGCATGTCGACTGATAACT
BO11605.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14454-PA | 363 | CG14454-RA | 1..360 | 378..19 | 1800 | 100 | Minus |
CG32453-PA | 363 | CG32453-RA | 1..360 | 378..19 | 1775 | 99.7 | Minus |
CG12546-PA | 390 | CG12546-RA | 91..182 | 324..233 | 385 | 96.7 | Minus |
CG14452-PA | 354 | CG14452-RA | 55..146 | 324..233 | 385 | 96.7 | Minus |
CG12546-PA | 390 | CG12546-RA | 176..227 | 236..185 | 235 | 98 | Minus |
CG14452-PA | 354 | CG14452-RA | 140..191 | 236..185 | 235 | 98 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:39:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14454-RB | 445 | CG14454-RB | 17..376 | 378..19 | 1800 | 100 | Minus |
CG14454-RA | 855 | CG14454-RA | 17..376 | 378..19 | 1800 | 100 | Minus |
CG32453-RB | 741 | CG32453-RB | 18..377 | 378..19 | 1785 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22692153..22692512 | 19..378 | 1800 | 100 | Plus |
3L | 28110227 | 3L | 22697247..22697606 | 378..19 | 1785 | 99.7 | Minus |
3L | 28110227 | 3L | 22693532..22693735 | 121..324 | 665 | 90.3 | Plus |
3L | 28110227 | 3L | 22696024..22696227 | 324..121 | 665 | 90.3 | Minus |
Blast to na_te.dros performed on 2015-02-04 10:39:10 has no hits.
BO11605.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:12 Download gff for
BO11605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-PA | 1..363 | 15..378 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:42 Download gff for
BO11605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-PA | 1..363 | 15..378 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:27:29 Download gff for
BO11605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 10..380 | 14..386 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:38:36 Download gff for
BO11605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 10..380 | 14..386 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:38:36 Download gff for
BO11605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22692149..22692515 | 14..379 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:27:29 Download gff for
BO11605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22685249..22685615 | 14..379 | 98 | -> | Plus |
BO11605.complete Sequence
394 bp assembled on 2006-10-11
GenBank Submission: FJ632124
> BO11605.complete
GAAGTTATCAGTCGACATGCGCTTCCTATTCGCTCTACTTCTCAGCGTGC
TCCTGTGTCTGCTCCTGGCTCAGGAGGGCAGTAGCAGCACATCTACATCC
TCGACGGCGACCACATCCACCGACTCCTCTGCCACCACTACCACGGCTTC
ATCCGCCACCACCACTACCACCACTGCCTCCTCCGCATCCACCACGACCA
CTGCCTCCTCTTCCTCCTCCTCGGCGGAGGCCAGGAGGCGCAGACGTGCT
CGCCGTCGTCGCCTGGCTCGTGAGCGCCGTCGTCGCCAGGAGCGGAGACA
GCGCCAGGAAAAGAGGAGGCGCAGGATGGAGCAGCTGCTGGTGAGGCAGC
GTCGCCTGATCAATCAGCTTCAGGGAGCAAGCTTTCTAGACCAT
BO11605.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:22:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14454-RB | 363 | CG14454-PB | 1..360 | 17..376 | 1800 | 100 | Plus |
CG14454-RA | 363 | CG14454-PA | 1..360 | 17..376 | 1800 | 100 | Plus |
CG32453-RB | 363 | CG32453-PB | 1..360 | 17..376 | 1785 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14454-RB | 445 | CG14454-RB | 17..376 | 17..376 | 1800 | 100 | Plus |
CG14454-RA | 855 | CG14454-RA | 17..376 | 17..376 | 1800 | 100 | Plus |
CG32453-RB | 741 | CG32453-RB | 18..377 | 17..376 | 1785 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22692153..22692512 | 376..17 | 1800 | 100 | Minus |
3L | 28110227 | 3L | 22697247..22697606 | 17..376 | 1785 | 99.7 | Plus |
3L | 28110227 | 3L | 22693532..22693735 | 274..71 | 665 | 90.3 | Minus |
3L | 28110227 | 3L | 22696024..22696227 | 71..274 | 665 | 90.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:22:47 has no hits.
BO11605.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:24 Download gff for
BO11605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 1..363 | 17..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:53 Download gff for
BO11605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 2..372 | 9..381 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:26 Download gff for
BO11605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 17..376 | 17..378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:25 Download gff for
BO11605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 2..372 | 9..381 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:08 Download gff for
BO11605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 17..376 | 17..378 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:08 Download gff for
BO11605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22692151..22692512 | 17..378 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:26 Download gff for
BO11605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22685251..22685612 | 17..378 | 99 | | Minus |
BO11605.pep Sequence
Translation from 16 to 394
> BO11605.pep
MRFLFALLLSVLLCLLLAQEGSSSTSTSSTATTSTDSSATTTTASSATTT
TTTASSASTTTTASSSSSSAEARRRRRARRRRLARERRRRQERRQRQEKR
RRRMEQLLVRQRRLINQLQGASFLDH
BO11605.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32453-PB | 120 | CG32453-PB | 1..120 | 1..120 | 559 | 100 | Plus |
CG32453-PA | 120 | CG32453-PA | 1..120 | 1..120 | 559 | 100 | Plus |
CG14454-PB | 120 | CG14454-PB | 1..120 | 1..120 | 559 | 100 | Plus |
CG14454-PA | 120 | CG14454-PA | 1..120 | 1..120 | 559 | 100 | Plus |
CG14452-PA | 117 | CG14452-PA | 1..117 | 1..120 | 408 | 74.2 | Plus |