Clone Sequence Records
BO11606.3prime Sequence
692 bp (691 high quality bases) assembled on 2006-04-19
> BO11606.3prime
ATGGTCTAGAAAGCTTGCAAAGTAAGAACGTCGAGCATCGTTGCGAATGC
TGTTGCACAGGCGGCAAGAGATGACACTCAGCAGGAGCTCGAAGCCAATG
AGTACGAGGGCCAGGATGTTAAAAATCTTGGTCAAGTGTTGCCAGTAGTT
CTCGAACTCCACCCGACAGCCGGTGTGGATCAGGTTCTCCGGCTTGCTCT
TGTCGTGGTTTCGGAAACATGTCTCCGGCGGCAGTCGTTCGTTGACGATG
TAATCCTGGGGACTTCCACGACCGCAGCACTGGAACCAGTTCTGGTACAG
CGACATGGCACCAGGGCTGTTCAGTTCCTCCTCCCAGGTGGCCTCCAGGG
CATTAGCCAGGTTGGAGGCCACCGTCTTCTCCTGGGTGATCAGCAAGTAG
ACGACGGCGAACTGGGCAATGATGACCAGGCACAGGAAAATAATGAACGT
CACTGTGCAGCACACGTTCTCGCGCCAGGCGGACAGGTATCCCCAAAGGA
CAACCAGCAGGGCAGCAGCCCCGAGTCCCACGTAGCCGTAGGCCGTCAGC
TGACCGATCTCGTTTAGGTTGTAGGACACCGCCACATAGATGCCGAAGGA
TATCAGCACCAAGGCTAGCAGTGTGCAAAGTACGTCCAGGGCGTAAACAA
TCAGCTTCACACTCGACGTGGACGCCATGTCGACTGATAACT
BO11606.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12845-PA | 663 | Tsp42Ef-RA | 1..660 | 678..19 | 3300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ef-RA | 1347 | CG12845-RA | 375..1035 | 679..19 | 3305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:49:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7027443..7027641 | 286..88 | 995 | 100 | Minus |
2R | 25286936 | 2R | 7026984..7027157 | 621..448 | 870 | 100 | Minus |
2R | 25286936 | 2R | 7027218..7027380 | 448..286 | 815 | 100 | Minus |
2R | 25286936 | 2R | 7027700..7027770 | 89..19 | 355 | 100 | Minus |
2R | 25286936 | 2R | 7025384..7025441 | 679..622 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 03:49:30 has no hits.
BO11606.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:14 Download gff for
BO11606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12845-PA | 1..663 | 18..678 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:45 Download gff for
BO11606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12845-PA | 1..663 | 18..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:58:38 Download gff for
BO11606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ef-RA | 363..1035 | 19..692 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:29:15 Download gff for
BO11606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ef-RA | 363..1035 | 19..692 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:29:15 Download gff for
BO11606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7026984..7027157 | 448..621 | 100 | -> | Minus |
2R | 7027219..7027380 | 286..447 | 100 | -> | Minus |
2R | 7025372..7025441 | 622..692 | 92 | -> | Minus |
2R | 7027444..7027641 | 88..285 | 100 | -> | Minus |
2R | 7027702..7027770 | 19..87 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:58:38 Download gff for
BO11606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2912877..2912946 | 622..692 | 92 | -> | Minus |
arm_2R | 2914489..2914662 | 448..621 | 100 | -> | Minus |
arm_2R | 2914724..2914885 | 286..447 | 100 | -> | Minus |
arm_2R | 2914949..2915146 | 88..285 | 100 | -> | Minus |
arm_2R | 2915207..2915275 | 19..87 | 100 | | Minus |
BO11606.5prime Sequence
692 bp (688 high quality bases) assembled on 2006-04-19
> BO11606.5prime
GAAGTTATCAGTCGACATGGCGTCCACGTCGAGTGTGAAGCTGATTGTTT
ACGCCCTGGACGTACTTTGCACACTGCTAGCCTTGGTGCTGATATCCTTC
GGCATCTATGTGGCGGTGTCCTACAACCTAAACGAGATCGGTCAGCTGAC
GGCCTACGGCTACGTGGGACTCGGGGCTGCTGCCCTGCTGGTTGTCCTTT
GGGGATACCTGTCCGCCTGGCGCGAGAACGTGTGCTGCACAGTGACGTTC
ATTATTTTCCTGTGCCTGGTCATCATTGCCCAGTTCGCCGTCGTCTACTT
GCTGATCACCCAGGAGAAGACGGTGGCCTCCAACCTGGCTAATGCCCTGG
AGGCCACCTGGGAGGAGGAACTGAACAGCCCTGGTGCCATGTCGCTGTAC
CAGAACTGGTTCCAGTGCTGCGGTCGTGGAAGTCCCCAGGATTACATCGT
CAACGAACGACTGCCGCCGGAGACATGTTTCCGAAACCACGACAAGAGCA
AGCCGGAGAACCTGATCCACACCGGCTGTCGGGTGGAGTTCGAGAACTAC
TGGCAACACTTGACCAAGATTTTTAACATCCTGGCCCTCGTACTCATTGG
CTTCGAGCTCCTGCTGAGTGTCATCTCTTGCCGCCTGTGCAACAGCATTC
GCAACGATGCTCGACGTTCTTACTTTGCAAGCTTTCTAGACC
BO11606.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12845-PA | 663 | Tsp42Ef-RA | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:53:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ef-RA | 1347 | CG12845-RA | 375..1035 | 16..676 | 3305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7027443..7027641 | 409..607 | 995 | 100 | Plus |
2R | 25286936 | 2R | 7026984..7027157 | 74..247 | 870 | 100 | Plus |
2R | 25286936 | 2R | 7027218..7027380 | 247..409 | 815 | 100 | Plus |
2R | 25286936 | 2R | 7027700..7027770 | 606..676 | 355 | 100 | Plus |
2R | 25286936 | 2R | 7025384..7025441 | 16..73 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:53:30 has no hits.
BO11606.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:15 Download gff for
BO11606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12845-PA | 1..663 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:47 Download gff for
BO11606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12845-PA | 1..663 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:39:24 Download gff for
BO11606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ef-RA | 363..1035 | 3..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:27 Download gff for
BO11606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ef-RA | 363..1035 | 3..676 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:27 Download gff for
BO11606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7026984..7027157 | 74..247 | 100 | -> | Plus |
2R | 7027219..7027380 | 248..409 | 100 | -> | Plus |
2R | 7027444..7027641 | 410..607 | 100 | -> | Plus |
2R | 7027702..7027770 | 608..676 | 100 | | Plus |
2R | 7025372..7025441 | 3..73 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:39:24 Download gff for
BO11606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2912877..2912946 | 3..73 | 92 | -> | Plus |
arm_2R | 2914949..2915146 | 410..607 | 100 | -> | Plus |
arm_2R | 2914489..2914662 | 74..247 | 100 | -> | Plus |
arm_2R | 2914724..2914885 | 248..409 | 100 | -> | Plus |
arm_2R | 2915207..2915275 | 608..676 | 100 | | Plus |
BO11606.complete Sequence
694 bp assembled on 2006-10-11
GenBank Submission: FJ632125
> BO11606.complete
GAAGTTATCAGTCGACATGGCGTCCACGTCGAGTGTGAAGCTGATTGTTT
ACGCCCTGGACGTACTTTGCACACTGCTAGCCTTGGTGCTGATATCCTTC
GGCATCTATGTGGCGGTGTCCTACAACCTAAACGAGATCGGTCAGCTGAC
GGCCTACGGCTACGTGGGACTCGGGGCTGCTGCCCTGCTGGTTGTCCTTT
GGGGATACCTGTCCGCCTGGCGCGAGAACGTGTGCTGCACAGTGACGTTC
ATTATTTTCCTGTGCCTGGTCATCATTGCCCAGTTCGCCGTCGTCTACTT
GCTGATCACCCAGGAGAAGACGGTGGCCTCCAACCTGGCTAATGCCCTGG
AGGCCACCTGGGAGGAGGAACTGAACAGCCCTGGTGCCATGTCGCTGTAC
CAGAACTGGTTCCAGTGCTGCGGTCGTGGAAGTCCCCAGGATTACATCGT
CAACGAACGACTGCCGCCGGAGACATGTTTCCGAAACCACGACAAGAGCA
AGCCGGAGAACCTGATCCACACCGGCTGTCGGGTGGAGTTCGAGAACTAC
TGGCAACACTTGACCAAGATTTTTAACATCCTGGCCCTCGTACTCATTGG
CTTCGAGCTCCTGCTGAGTGTCATCTCTTGCCGCCTGTGCAACAGCATTC
GCAACGATGCTCGACGTTCTTACTTTGCAAGCTTTCTAGACCAT
BO11606.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ef-RA | 663 | CG12845-PA | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ef-RA | 1347 | CG12845-RA | 375..1035 | 16..676 | 3305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:28:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7027443..7027641 | 409..607 | 995 | 100 | Plus |
2R | 25286936 | 2R | 7026984..7027157 | 74..247 | 870 | 100 | Plus |
2R | 25286936 | 2R | 7027218..7027380 | 247..409 | 815 | 100 | Plus |
2R | 25286936 | 2R | 7027700..7027770 | 606..676 | 355 | 100 | Plus |
2R | 25286936 | 2R | 7025384..7025441 | 16..73 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:28:42 has no hits.
BO11606.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:01 Download gff for
BO11606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ef-RA | 1..663 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:08 Download gff for
BO11606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ef-RA | 361..1033 | 3..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:08 Download gff for
BO11606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ef-RA | 376..1035 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:02 Download gff for
BO11606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ef-RA | 361..1033 | 3..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:54 Download gff for
BO11606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ef-RA | 376..1035 | 17..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:54 Download gff for
BO11606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7026984..7027157 | 74..247 | 100 | -> | Plus |
2R | 7027219..7027380 | 248..409 | 100 | -> | Plus |
2R | 7027444..7027641 | 410..607 | 100 | -> | Plus |
2R | 7027702..7027770 | 608..678 | 97 | | Plus |
2R | 7025385..7025441 | 17..73 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:08 Download gff for
BO11606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2912890..2912946 | 17..73 | 100 | -> | Plus |
arm_2R | 2914489..2914662 | 74..247 | 100 | -> | Plus |
arm_2R | 2914724..2914885 | 248..409 | 100 | -> | Plus |
arm_2R | 2914949..2915146 | 410..607 | 100 | -> | Plus |
arm_2R | 2915207..2915275 | 608..678 | 97 | | Plus |
BO11606.pep Sequence
Translation from 16 to 694
> BO11606.pep
MASTSSVKLIVYALDVLCTLLALVLISFGIYVAVSYNLNEIGQLTAYGYV
GLGAAALLVVLWGYLSAWRENVCCTVTFIIFLCLVIIAQFAVVYLLITQE
KTVASNLANALEATWEEELNSPGAMSLYQNWFQCCGRGSPQDYIVNERLP
PETCFRNHDKSKPENLIHTGCRVEFENYWQHLTKIFNILALVLIGFELLL
SVISCRLCNSIRNDARRSYFASFLDH
BO11606.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ef-PA | 220 | CG12845-PA | 1..220 | 1..220 | 1150 | 100 | Plus |
Tsp42Ei-PB | 229 | CG12843-PB | 6..224 | 5..218 | 266 | 29 | Plus |
Tsp42Ei-PA | 229 | CG12843-PA | 6..224 | 5..218 | 266 | 29 | Plus |
Tsp42Ea-PC | 226 | CG18817-PC | 6..226 | 5..220 | 257 | 27.9 | Plus |
Tsp42Ea-PB | 226 | CG18817-PB | 6..226 | 5..220 | 257 | 27.9 | Plus |