Clone BO11606 Report

Search the DGRC for BO11606

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptTsp42Ef-RA
Protein status:BO11606.pep: validated full length
Sequenced Size:694

Clone Sequence Records

BO11606.3prime Sequence

692 bp (691 high quality bases) assembled on 2006-04-19

> BO11606.3prime
ATGGTCTAGAAAGCTTGCAAAGTAAGAACGTCGAGCATCGTTGCGAATGC
TGTTGCACAGGCGGCAAGAGATGACACTCAGCAGGAGCTCGAAGCCAATG
AGTACGAGGGCCAGGATGTTAAAAATCTTGGTCAAGTGTTGCCAGTAGTT
CTCGAACTCCACCCGACAGCCGGTGTGGATCAGGTTCTCCGGCTTGCTCT
TGTCGTGGTTTCGGAAACATGTCTCCGGCGGCAGTCGTTCGTTGACGATG
TAATCCTGGGGACTTCCACGACCGCAGCACTGGAACCAGTTCTGGTACAG
CGACATGGCACCAGGGCTGTTCAGTTCCTCCTCCCAGGTGGCCTCCAGGG
CATTAGCCAGGTTGGAGGCCACCGTCTTCTCCTGGGTGATCAGCAAGTAG
ACGACGGCGAACTGGGCAATGATGACCAGGCACAGGAAAATAATGAACGT
CACTGTGCAGCACACGTTCTCGCGCCAGGCGGACAGGTATCCCCAAAGGA
CAACCAGCAGGGCAGCAGCCCCGAGTCCCACGTAGCCGTAGGCCGTCAGC
TGACCGATCTCGTTTAGGTTGTAGGACACCGCCACATAGATGCCGAAGGA
TATCAGCACCAAGGCTAGCAGTGTGCAAAGTACGTCCAGGGCGTAAACAA
TCAGCTTCACACTCGACGTGGACGCCATGTCGACTGATAACT

BO11606.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12845-PA 663 Tsp42Ef-RA 1..660 678..19 3300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ef-RA 1347 CG12845-RA 375..1035 679..19 3305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7027443..7027641 286..88 995 100 Minus
2R 25286936 2R 7026984..7027157 621..448 870 100 Minus
2R 25286936 2R 7027218..7027380 448..286 815 100 Minus
2R 25286936 2R 7027700..7027770 89..19 355 100 Minus
2R 25286936 2R 7025384..7025441 679..622 290 100 Minus
Blast to na_te.dros performed on 2015-02-09 03:49:30 has no hits.

BO11606.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:14 Download gff for BO11606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12845-PA 1..663 18..678 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:45 Download gff for BO11606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12845-PA 1..663 18..678 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:58:38 Download gff for BO11606.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ef-RA 363..1035 19..692 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:29:15 Download gff for BO11606.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ef-RA 363..1035 19..692 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:29:15 Download gff for BO11606.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7026984..7027157 448..621 100 -> Minus
2R 7027219..7027380 286..447 100 -> Minus
2R 7025372..7025441 622..692 92 -> Minus
2R 7027444..7027641 88..285 100 -> Minus
2R 7027702..7027770 19..87 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:58:38 Download gff for BO11606.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2912877..2912946 622..692 92 -> Minus
arm_2R 2914489..2914662 448..621 100 -> Minus
arm_2R 2914724..2914885 286..447 100 -> Minus
arm_2R 2914949..2915146 88..285 100 -> Minus
arm_2R 2915207..2915275 19..87 100   Minus

BO11606.5prime Sequence

692 bp (688 high quality bases) assembled on 2006-04-19

> BO11606.5prime
GAAGTTATCAGTCGACATGGCGTCCACGTCGAGTGTGAAGCTGATTGTTT
ACGCCCTGGACGTACTTTGCACACTGCTAGCCTTGGTGCTGATATCCTTC
GGCATCTATGTGGCGGTGTCCTACAACCTAAACGAGATCGGTCAGCTGAC
GGCCTACGGCTACGTGGGACTCGGGGCTGCTGCCCTGCTGGTTGTCCTTT
GGGGATACCTGTCCGCCTGGCGCGAGAACGTGTGCTGCACAGTGACGTTC
ATTATTTTCCTGTGCCTGGTCATCATTGCCCAGTTCGCCGTCGTCTACTT
GCTGATCACCCAGGAGAAGACGGTGGCCTCCAACCTGGCTAATGCCCTGG
AGGCCACCTGGGAGGAGGAACTGAACAGCCCTGGTGCCATGTCGCTGTAC
CAGAACTGGTTCCAGTGCTGCGGTCGTGGAAGTCCCCAGGATTACATCGT
CAACGAACGACTGCCGCCGGAGACATGTTTCCGAAACCACGACAAGAGCA
AGCCGGAGAACCTGATCCACACCGGCTGTCGGGTGGAGTTCGAGAACTAC
TGGCAACACTTGACCAAGATTTTTAACATCCTGGCCCTCGTACTCATTGG
CTTCGAGCTCCTGCTGAGTGTCATCTCTTGCCGCCTGTGCAACAGCATTC
GCAACGATGCTCGACGTTCTTACTTTGCAAGCTTTCTAGACC

BO11606.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12845-PA 663 Tsp42Ef-RA 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ef-RA 1347 CG12845-RA 375..1035 16..676 3305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7027443..7027641 409..607 995 100 Plus
2R 25286936 2R 7026984..7027157 74..247 870 100 Plus
2R 25286936 2R 7027218..7027380 247..409 815 100 Plus
2R 25286936 2R 7027700..7027770 606..676 355 100 Plus
2R 25286936 2R 7025384..7025441 16..73 290 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:53:30 has no hits.

BO11606.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:15 Download gff for BO11606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12845-PA 1..663 17..677 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:47 Download gff for BO11606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12845-PA 1..663 17..677 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:39:24 Download gff for BO11606.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ef-RA 363..1035 3..676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:27 Download gff for BO11606.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ef-RA 363..1035 3..676 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:27 Download gff for BO11606.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7026984..7027157 74..247 100 -> Plus
2R 7027219..7027380 248..409 100 -> Plus
2R 7027444..7027641 410..607 100 -> Plus
2R 7027702..7027770 608..676 100   Plus
2R 7025372..7025441 3..73 92 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:39:24 Download gff for BO11606.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2912877..2912946 3..73 92 -> Plus
arm_2R 2914949..2915146 410..607 100 -> Plus
arm_2R 2914489..2914662 74..247 100 -> Plus
arm_2R 2914724..2914885 248..409 100 -> Plus
arm_2R 2915207..2915275 608..676 100   Plus

BO11606.complete Sequence

694 bp assembled on 2006-10-11

GenBank Submission: FJ632125

> BO11606.complete
GAAGTTATCAGTCGACATGGCGTCCACGTCGAGTGTGAAGCTGATTGTTT
ACGCCCTGGACGTACTTTGCACACTGCTAGCCTTGGTGCTGATATCCTTC
GGCATCTATGTGGCGGTGTCCTACAACCTAAACGAGATCGGTCAGCTGAC
GGCCTACGGCTACGTGGGACTCGGGGCTGCTGCCCTGCTGGTTGTCCTTT
GGGGATACCTGTCCGCCTGGCGCGAGAACGTGTGCTGCACAGTGACGTTC
ATTATTTTCCTGTGCCTGGTCATCATTGCCCAGTTCGCCGTCGTCTACTT
GCTGATCACCCAGGAGAAGACGGTGGCCTCCAACCTGGCTAATGCCCTGG
AGGCCACCTGGGAGGAGGAACTGAACAGCCCTGGTGCCATGTCGCTGTAC
CAGAACTGGTTCCAGTGCTGCGGTCGTGGAAGTCCCCAGGATTACATCGT
CAACGAACGACTGCCGCCGGAGACATGTTTCCGAAACCACGACAAGAGCA
AGCCGGAGAACCTGATCCACACCGGCTGTCGGGTGGAGTTCGAGAACTAC
TGGCAACACTTGACCAAGATTTTTAACATCCTGGCCCTCGTACTCATTGG
CTTCGAGCTCCTGCTGAGTGTCATCTCTTGCCGCCTGTGCAACAGCATTC
GCAACGATGCTCGACGTTCTTACTTTGCAAGCTTTCTAGACCAT

BO11606.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ef-RA 663 CG12845-PA 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ef-RA 1347 CG12845-RA 375..1035 16..676 3305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7027443..7027641 409..607 995 100 Plus
2R 25286936 2R 7026984..7027157 74..247 870 100 Plus
2R 25286936 2R 7027218..7027380 247..409 815 100 Plus
2R 25286936 2R 7027700..7027770 606..676 355 100 Plus
2R 25286936 2R 7025384..7025441 16..73 290 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:28:42 has no hits.

BO11606.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:01 Download gff for BO11606.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ef-RA 1..663 17..677 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:08 Download gff for BO11606.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ef-RA 361..1033 3..676 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:08 Download gff for BO11606.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ef-RA 376..1035 17..678 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:02 Download gff for BO11606.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ef-RA 361..1033 3..676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:54 Download gff for BO11606.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ef-RA 376..1035 17..678 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:54 Download gff for BO11606.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7026984..7027157 74..247 100 -> Plus
2R 7027219..7027380 248..409 100 -> Plus
2R 7027444..7027641 410..607 100 -> Plus
2R 7027702..7027770 608..678 97   Plus
2R 7025385..7025441 17..73 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:08 Download gff for BO11606.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2912890..2912946 17..73 100 -> Plus
arm_2R 2914489..2914662 74..247 100 -> Plus
arm_2R 2914724..2914885 248..409 100 -> Plus
arm_2R 2914949..2915146 410..607 100 -> Plus
arm_2R 2915207..2915275 608..678 97   Plus

BO11606.pep Sequence

Translation from 16 to 694

> BO11606.pep
MASTSSVKLIVYALDVLCTLLALVLISFGIYVAVSYNLNEIGQLTAYGYV
GLGAAALLVVLWGYLSAWRENVCCTVTFIIFLCLVIIAQFAVVYLLITQE
KTVASNLANALEATWEEELNSPGAMSLYQNWFQCCGRGSPQDYIVNERLP
PETCFRNHDKSKPENLIHTGCRVEFENYWQHLTKIFNILALVLIGFELLL
SVISCRLCNSIRNDARRSYFASFLDH

BO11606.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ef-PA 220 CG12845-PA 1..220 1..220 1150 100 Plus
Tsp42Ei-PB 229 CG12843-PB 6..224 5..218 266 29 Plus
Tsp42Ei-PA 229 CG12843-PA 6..224 5..218 266 29 Plus
Tsp42Ea-PC 226 CG18817-PC 6..226 5..220 257 27.9 Plus
Tsp42Ea-PB 226 CG18817-PB 6..226 5..220 257 27.9 Plus