Clone Sequence Records
BO11607.3prime Sequence
873 bp (772 high quality bases) assembled on 2006-04-19
> BO11607.3prime
ATGGTCTAGAAAGCTTGCCGAGATTGTGGAAAACGCTGGTTTCAGCTTAC
CCACCGTGCCCAATATCAGCCTGGTGGGTGTGGCCCGGCTGTCTGGGCCC
AGTTTGGCAGCTGCCACTTGGCTGTCATCGTGGCTGCCACCTCCACTAGA
CTGCCTTCCCCCGTGCCACATCAAACCCAAACTGTTGCCGTTGCCAATGG
TAGTGGCGGTGGCGGCGGCGGCGGTGGTGGTGCTGCTGCTATTGTTGTTG
CAATCCACGAGAAAATCCAAGGCTGTGGGCGTCGCATCCGTCAGATTCAA
ATGCTCAAAGTTAAAGACAAGGCCCGATCCGCAGTTGTGGCTGCCAGCGC
TATCCAAGCCACTGTCGCTGGCTGCACCCGATCCAAATCCCGATCCCGAT
TCCGATTCCGCCTGATCTACTGCATTGCAGGTCTCGATCAGCTTGCGTGA
TATCTCATTGAGGCTCGCATCGAGCAGCGTCTCCGCCTGGGCGGAAATCG
AGGAGGAGGCGTTGCCCAGCTTCCCACCTCGCCAACAATTTCCAAACAGA
TCGTTGGCAATGTTGATTCCACTCAGGATATCCCCGTAGCCGGAATCATC
GCTCAGGCATTGCGAAGGTGTGGCCACTGCGCTCGGATGACTCCGCTGGG
ATCCGATTACTCCCACTTTTTCCGCCCGGCTGCTATCGCCGGTAATGGGA
GCGAATTCCTCGGTGGTCTCCTCCTGCAGGGCCAATGAGCTGGGCAGGCT
CTGGCTACAAATGGAGCTATCGCAGGAGCTGTCCGAGTGAGTGGATGACG
TTGAGGAGGAAGACTCTCGGCTTCCGCCTCCTGGCTCGCTGGAAGAGGCA
TCGGAAAGCGATCGCCGGAGCCG
BO11607.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17786-PA | 1755 | CG17786-RA | 900..1752 | 871..19 | 4240 | 99.8 | Minus |
| CG32159-PB | 2559 | CG32159-RB | 1009..1036 | 237..210 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:20:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17786-RA | 4088 | CG17786-RA | 1159..2011 | 871..19 | 4250 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:20:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24216708..24217560 | 19..871 | 4250 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:20:34 has no hits.
BO11607.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:16 Download gff for
BO11607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17786-PA | 898..1755 | 16..873 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:48 Download gff for
BO11607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17786-PA | 898..1755 | 16..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:55:54 Download gff for
BO11607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17786-RA | 1157..2011 | 19..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:55 Download gff for
BO11607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17786-RA | 1157..2011 | 19..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:55 Download gff for
BO11607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24216708..24217561 | 19..873 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:55:54 Download gff for
BO11607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20042430..20043283 | 19..873 | 99 | | Plus |
BO11607.5prime Sequence
882 bp (757 high quality bases) assembled on 2006-04-19
> BO11607.5prime
GAAGTTATCAGTCGACATGAGATCGCATGTGGCCGTTTACAGGGCGCCAG
AATCAGCAGCACCACCACCACCGCCGCCCAACTACGCGTCCTTGCGATAC
CACCAGCATCCGTTGAGCCATTGGCCGGGTAGCCAGCATCCAGCTCCTGT
GTACAGGTTGCATCATGGTCCGCCGTCTGCACCACCGCCCAATTGGGCAG
CTCAGTCGGCTGGCCAACCACCTCAACCAGTTGGCTATGGAGTGGTTAAT
CAGCAGCGGATCAATGAGTGCGCCGGCATACCGCTCATCTCGAATGCCTC
CAGTCACTTGTCGCCAGCCCAGCGACAGAGATTGCTGAGGAAATCCGCCC
TTAAAACATGTCCAACTTGGCCACCTGGAGGGGCCACTATGTCCCAGCTG
GCTGTGCATGCCCAGGGCATGCCGCTGCTCCAGCAGAATGGCAAGCACCA
TCTCCAGCAACAGCAGATGCAGCACCACCAGCCACTACATCACCATCATC
CTGTGACCAACAACTGGAGTGGCTACCAGCCGATGAGCAGTCAGCCTGCT
TTCAAGTTGGCTGACAAATCTCGAGCCCTTCGCTATCAGAATTCGGCACC
ACCGGTGCTCAGTAGCCAAGAGAAGACGCCTAACAATGCTGCTGGCCAGG
ATCAGGCCACCTCGCCAGCGGAGACCTGTCTGCCGAGGATCATTAAACCC
AGGAAGCGACGAAAGAAGGATCGAAAACCGGGCAATGGGGTTTTGCTCAA
AATTGAGGCGGATATGCAACCGAAGATGTCCAATCCGCTGGACGGTTACA
CCGCGAATGCGGGAGCATCTTACCATCTACCATCTGGAATATTGCAGCAT
GATCATACGCACGGAGTCTGCTTCTGCCCAAA
BO11607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17786-PA | 1755 | CG17786-RA | 1..862 | 17..878 | 4285 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17786-RA | 4088 | CG17786-RA | 260..1121 | 17..878 | 4295 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24217598..24218459 | 878..17 | 4295 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-12 01:02:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2463 | 422..545 | 172 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6825 | 394..518 | 140 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2424 | 444..514 | 139 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6917 | 425..500 | 139 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6857 | 431..530 | 138 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6809 | 441..526 | 134 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6885 | 431..539 | 133 | 64 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1180 | 425..520 | 127 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2727 | 455..577 | 121 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2738..2832 | 411..500 | 120 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2392 | 444..518 | 116 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6528..6571 | 441..484 | 112 | 72.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1088..1154 | 413..479 | 110 | 62.7 | Plus |
BO11607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:17 Download gff for
BO11607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17786-PA | 1..862 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:49 Download gff for
BO11607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17786-PA | 1..862 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:18:23 Download gff for
BO11607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17786-RA | 256..1121 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:46:40 Download gff for
BO11607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17786-RA | 256..1121 | 9..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:46:40 Download gff for
BO11607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24217597..24218463 | 9..879 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:18:23 Download gff for
BO11607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20043319..20044185 | 9..879 | 99 | | Minus |
BO11607.complete Sequence
1786 bp assembled on 2008-01-17
GenBank Submission: FJ632126
> BO11607.complete
GAAGTTATCAGTCGACATGAGATCGCATGTGGCCGTTTACAGGGCGCCAG
AATCAGCAGCACCACCACCACCGCCGCCCAACTACGCGTCCTTGCGATAC
CACCAGCATCCGTTGAGCCATTGGCCGGGTAGCCAGCATCCAGCTCCTGT
GTACAGGTTGCATCATGGTCCGCCGTCTGCACCACCGCCCAATTGGGCAG
CTCAGTCGGCTGGCCAACCACCTCAACCAGTTGGCTATGGAGTGGTTAAT
CAGCAGCGGATCAATGAGTGCGCCGGCATACCGCTCATCTCGAATGCCTC
CAGTCACTTGTCGCCAGCCCAGCGACAGAGATTGCTGAGGAAATCCGCCC
TTAAAACATGTCCAACTTGGCCACCTGGAGGGGCCACTATGTCCCAGCTG
GCTGTGCATGCCCAGGGCATGCCGCTGCTCCAGCAGAATGGCAAGCACCA
TCTCCAGCAACAGCAGATGCAGCACCACCAGCCACTACATCACCATCATC
CTGTGACCAACAACTGGAGTGGCTACCAGCCGATGAGCAGTCAGCCTGCT
TTCAAGTTGGCTGACAAATCTCGAGCCCTTCGCTATCAGAATTCGGCACC
ACCGGTGCTCAGTAGCCAAGAGAAGACGCCTAACAATGCTGCTGGCCAGG
ATCAGGCCACCTCGCCAGCGGAGACCTGTCTGCCGAGGATCATTAAACCC
AGGAAGCGACGAAAGAAGGATCGAAAACCGGGCAATGGGGTTTTGCTCAA
AATTGAGGCGGATATGCAACCGAAGATGTCCAATCCGCTGGACGGTTACA
CCGCGAATGCGGGAGCATCTTACCATCTACCATCTGGAATATTGCAGCAT
GATCATACGCACGGAGTCTGCTTCTGCCGAGAATGTGACCCACTTCGTTC
GCTTTGGGATTACCCGCTCCGGCGATCGCTTTCCGATGCCTCTTCCAGCG
AGCCAGGAGGCGGAAGCCGAGAGTCCTCCTCCTCAACGTCATCCACTCAC
TCGGACAGCTCCTGCGATAGCTCCATTTGTAGCCAGAGCCTGCCCAGCTC
ATTGGCCCTGCAGGAGGAGACCACCGAGGAATTCGCTCCCATTACCGGCG
ATAGCAGCCGGGCGGAAAAAGTGGGAGTAATCGGATCCCAGCGGAGTCAT
CCGAGCGCAGTGGCCACACCTTCGCAATGCCTGAGCGATGATTCCGGCTA
CGGGGATATCCTGAGTGGAATCAACATTGCCAACGATCTGTTTGGAAATT
GTTGGCGAGGTGGGAAGCTGGGCAACGCCTCCTCCTCGATTTCCGCCCAG
GCGGAGACGCTGCTCGATGCGAGCCTCAATGAGATATCACGCAAGCTGAT
CGAGACCTGCAATGCAGTAGATCAGGCGGAATCGGAATCGGGATCGGGAT
TTGGATCGGGTGCAGCCAGCGACAGTGGCTTGGATAGCGCTGGCAGCCAC
AACTGCGGATCGGGCCTTGTCTTTAACTTTGAGCATTTGAATCTGACGGA
TGCGACGCCCACAGCCTTGGATTTTCTCGTGGATTGCAACAACAATAGCA
GCAGCACCACCACCGCCGCCGCCGCCACCGCCACTACCATTGGCAACGGC
AACAGTTTGGGTTTGATGTGGCACGGGGGAAGGCAGTCTAGTGGAGGTGG
CAGCCACGATGACAGCCAAGTGGCAGCTGCCAAACTGGGCCCAGACAGCC
GGGCCACACCCACCAGGCTGATATTGGGCACGGTGGGTAAGCTGAAACCA
GCGTTTTCCACAATCTCGGCAAGCTTTCTAGACCAT
BO11607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17786-RA | 1755 | CG17786-PA | 1..1752 | 17..1768 | 8745 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17786-RA | 4088 | CG17786-RA | 260..2011 | 17..1768 | 8745 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24216708..24218459 | 1768..17 | 8745 | 99.9 | Minus |
Blast to na_te.dros performed 2014-11-27 15:36:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2463 | 422..545 | 172 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6825 | 394..518 | 140 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2424 | 444..514 | 139 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6857 | 431..530 | 138 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6809 | 441..526 | 134 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6885 | 431..539 | 133 | 64 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1180 | 425..520 | 127 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2727 | 455..577 | 121 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2738..2832 | 411..500 | 120 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2392 | 444..518 | 116 | 63.2 | Plus |
BO11607.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:41 Download gff for
BO11607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17786-RA | 1..1755 | 17..1771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:00 Download gff for
BO11607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17786-RA | 258..2009 | 17..1770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:33 Download gff for
BO11607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17786-RA | 260..2011 | 17..1770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:41 Download gff for
BO11607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17786-RA | 254..2009 | 9..1768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:53 Download gff for
BO11607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17786-RA | 260..2011 | 17..1770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:53 Download gff for
BO11607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24216704..24218459 | 17..1770 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:33 Download gff for
BO11607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20042426..20044181 | 17..1770 | 99 | | Minus |
BO11607.pep Sequence
Translation from 16 to 1786
> BO11607.pep
MRSHVAVYRAPESAAPPPPPPNYASLRYHQHPLSHWPGSQHPAPVYRLHH
GPPSAPPPNWAAQSAGQPPQPVGYGVVNQQRINECAGIPLISNASSHLSP
AQRQRLLRKSALKTCPTWPPGGATMSQLAVHAQGMPLLQQNGKHHLQQQQ
MQHHQPLHHHHPVTNNWSGYQPMSSQPAFKLADKSRALRYQNSAPPVLSS
QEKTPNNAAGQDQATSPAETCLPRIIKPRKRRKKDRKPGNGVLLKIEADM
QPKMSNPLDGYTANAGASYHLPSGILQHDHTHGVCFCRECDPLRSLWDYP
LRRSLSDASSSEPGGGSRESSSSTSSTHSDSSCDSSICSQSLPSSLALQE
ETTEEFAPITGDSSRAEKVGVIGSQRSHPSAVATPSQCLSDDSGYGDILS
GINIANDLFGNCWRGGKLGNASSSISAQAETLLDASLNEISRKLIETCNA
VDQAESESGSGFGSGAASDSGLDSAGSHNCGSGLVFNFEHLNLTDATPTA
LDFLVDCNNNSSSTTTAAAATATTIGNGNSLGLMWHGGRQSSGGGSHDDS
QVAAAKLGPDSRATPTRLILGTVGKLKPAFSTISASFLDH
BO11607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:20:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17786-PA | 584 | CG17786-PA | 1..584 | 1..584 | 3105 | 100 | Plus |
