Clone Sequence Records
BO11608.3prime Sequence
644 bp (643 high quality bases) assembled on 2006-04-19
> BO11608.3prime
ATGGTCTAGAAAGCTTGCTCGTTTTCTGTGCATGTGCTCACGGTTCTTGC
GCTTCCAAGCAGCACGCCTAGATCCACCAATTGTCTGGGAGTATCTATAT
CCCTTGCCAATGCCACGCGAACTTTTTCCAGCTGATGTAAGGCCACGCAA
TTCACGATGCTTGTGGACATGCTTGCAGATCCAGTTAATTTTTGGATCAC
GACGAATAGCACTGTGATGAGTATCAATTAAGATTACTTCAAAATATTTA
TAAGAAGCATCTTGCGCAATCCAATACGAGTTCAAAACTCGCAAGCCGCC
AAGTCTACGACCAACACGTTCCTCAGCAATGGATTGCAAACCACGATATG
GTTTTAACTGGTTTACACCATGACTCTTCGGCTTGCCATAAGTGCATCCT
TTGGGAACTGGACGCTTGCGACCTCCGCGGCGAACACGGATTCTATAAAT
CACGAACCCCTGTTTGGCTCTGTATCCTAAACGTCTTGCTTTATCCGGGC
GAGTAGGTCTTGGCGAACGATGCAATTTCGTTAGTTGGCGGTATTGCCAA
ACGCGAATACGTAGCAAGTAGCGCATCACATCGCTCTGCTTCTTCCTATA
AAGTTCCTGCATGTACCGATAAGCCCCCATGTCGACTGATAACT
BO11608.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:26:33 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:30:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL15-RI | 950 | CG17420-RI | 288..899 | 630..19 | 3060 | 100 | Minus |
RpL15-RH | 882 | CG17420-RH | 220..831 | 630..19 | 3060 | 100 | Minus |
RpL15-RG | 694 | CG17420-RG | 32..643 | 630..19 | 3060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 27267610..27267919 | 630..321 | 1550 | 100 | Minus |
3L | 28110227 | 3L | 27268090..27268394 | 323..19 | 1525 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 11:30:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 3070..3129 | 227..288 | 115 | 69.4 | Plus |
BO11608.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:28:55 Download gff for
BO11608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL15-RG | 22..649 | 11..639 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:08:10 Download gff for
BO11608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL15-RG | 22..649 | 11..639 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:08:10 Download gff for
BO11608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 27267607..27267918 | 322..633 | 99 | -> | Minus |
3L | 27268092..27268400 | 11..321 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:28:55 Download gff for
BO11608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 2398143..2398454 | 322..633 | 99 | -> | Minus |
3LHet | 2398628..2398936 | 11..321 | 98 | | Minus |
BO11608.5prime Sequence
644 bp (643 high quality bases) assembled on 2006-04-19
> BO11608.5prime
GAAGTTATCAGTCGACATGGGGGCTTATCGGTACATGCAGGAACTTTATA
GGAAGAAGCAGAGCGATGTGATGCGCTACTTGCTACGTATTCGCGTTTGG
CAATACCGCCAACTAACGAAATTGCATCGTTCGCCAAGACCTACTCGCCC
GGATAAAGCAAGACGTTTAGGATACAGAGCCAAACAGGGGTTCGTGATTT
ATAGAATCCGTGTTCGCCGCGGAGGTCGCAAGCGTCCAGTTCCCAAAGGA
TGCACTTATGGCAAGCCGAAGAGTCATGGTGTAAACCAGTTAAAACCATA
TCGTGGTTTGCAATCCATTGCTGAGGAACGTGTTGGTCGTAGACTTGGCG
GCTTGCGAGTTTTGAACTCGTATTGGATTGCGCAAGATGCTTCTTATAAA
TATTTTGAAGTAATCTTAATTGATACTCATCACAGTGCTATTCGTCGTGA
TCCAAAAATTAACTGGATCTGCAAGCATGTCCACAAGCATCGTGAATTGC
GTGGCCTTACATCAGCTGGAAAAAGTTCGCGTGGCATTGGCAAGGGATAT
AGATACTCCCAGACAATTGGTGGATCTAGGCGTGCTGCTTGGAAGCGCAA
GAACCGTGAGCACATGCACAGAAAACGAGCAAGCTTTCTAGACC
BO11608.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:26:33 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:28:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL15-RI | 950 | CG17420-RI | 288..899 | 17..628 | 3060 | 100 | Plus |
RpL15-RH | 882 | CG17420-RH | 220..831 | 17..628 | 3060 | 100 | Plus |
RpL15-RG | 694 | CG17420-RG | 32..643 | 17..628 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:28:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 27267610..27267919 | 17..326 | 1550 | 100 | Plus |
3L | 28110227 | 3L | 27268090..27268394 | 324..628 | 1525 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 10:28:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 3070..3129 | 420..359 | 115 | 69.4 | Minus |
BO11608.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:05:48 Download gff for
BO11608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL15-RG | 22..649 | 8..636 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:16 Download gff for
BO11608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL15-RG | 22..649 | 8..636 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:16 Download gff for
BO11608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 27267607..27267918 | 14..325 | 99 | -> | Plus |
3L | 27268092..27268400 | 326..636 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:05:48 Download gff for
BO11608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 2398143..2398454 | 14..325 | 99 | -> | Plus |
3LHet | 2398628..2398936 | 326..636 | 98 | | Plus |
BO11608.complete Sequence
646 bp assembled on 2006-10-11
GenBank Submission: FJ632127
> BO11608.complete
GAAGTTATCAGTCGACATGGGGGCTTATCGGTACATGCAGGAACTTTATA
GGAAGAAGCAGAGCGATGTGATGCGCTACTTGCTACGTATTCGCGTTTGG
CAATACCGCCAACTAACGAAATTGCATCGTTCGCCAAGACCTACTCGCCC
GGATAAAGCAAGACGTTTAGGATACAGAGCCAAACAGGGGTTCGTGATTT
ATAGAATCCGTGTTCGCCGCGGAGGTCGCAAGCGTCCAGTTCCCAAAGGA
TGCACTTATGGCAAGCCGAAGAGTCATGGTGTAAACCAGTTAAAACCATA
TCGTGGTTTGCAATCCATTGCTGAGGAACGTGTTGGTCGTAGACTTGGCG
GCTTGCGAGTTTTGAACTCGTATTGGATTGCGCAAGATGCTTCTTATAAA
TATTTTGAAGTAATCTTAATTGATACTCATCACAGTGCTATTCGTCGTGA
TCCAAAAATTAACTGGATCTGCAAGCATGTCCACAAGCATCGTGAATTGC
GTGGCCTTACATCAGCTGGAAAAAGTTCGCGTGGCATTGGCAAGGGATAT
AGATACTCCCAGACAATTGGTGGATCTAGGCGTGCTGCTTGGAAGCGCAA
GAACCGTGAGCACATGCACAGAAAACGAGCAAGCTTTCTAGACCAT
BO11608.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:22:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL15-RI | 615 | CG17420-PI | 1..612 | 17..628 | 3060 | 100 | Plus |
RpL15-RH | 615 | CG17420-PH | 1..612 | 17..628 | 3060 | 100 | Plus |
RpL15-RG | 615 | CG17420-PG | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL15-RI | 950 | CG17420-RI | 288..899 | 17..628 | 3060 | 100 | Plus |
RpL15-RH | 882 | CG17420-RH | 220..831 | 17..628 | 3060 | 100 | Plus |
RpL15-RG | 694 | CG17420-RG | 32..643 | 17..628 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 27267610..27267919 | 17..326 | 1550 | 100 | Plus |
3L | 28110227 | 3L | 27268090..27268394 | 324..628 | 1525 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:22:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 3070..3129 | 420..359 | 115 | 69.4 | Minus |
BO11608.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:41 Download gff for
BO11608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL15-RB | 1..615 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:46 Download gff for
BO11608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL15-RB | 347..967 | 14..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:45 Download gff for
BO11608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL15-RG | 32..643 | 17..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:41 Download gff for
BO11608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL15-RB | 347..967 | 14..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:12 Download gff for
BO11608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL15-RG | 32..643 | 17..630 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:12 Download gff for
BO11608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 27267610..27267918 | 17..325 | 100 | -> | Plus |
3L | 27268092..27268394 | 326..630 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:45 Download gff for
BO11608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 2398146..2398454 | 17..325 | 100 | -> | Plus |
3LHet | 2398628..2398930 | 326..630 | 99 | | Plus |
BO11608.pep Sequence
Translation from 16 to 646
> BO11608.pep
MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARR
LGYRAKQGFVIYRIRVRRGGRKRPVPKGCTYGKPKSHGVNQLKPYRGLQS
IAEERVGRRLGGLRVLNSYWIAQDASYKYFEVILIDTHHSAIRRDPKINW
ICKHVHKHRELRGLTSAGKSSRGIGKGYRYSQTIGGSRRAAWKRKNREHM
HRKRASFLDH
BO11608.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL15-PI | 204 | CG17420-PI | 1..204 | 1..204 | 1095 | 100 | Plus |
RpL15-PH | 204 | CG17420-PH | 1..204 | 1..204 | 1095 | 100 | Plus |
RpL15-PG | 204 | CG17420-PG | 1..204 | 1..204 | 1095 | 100 | Plus |
RpL15-PF | 204 | CG17420-PF | 1..204 | 1..204 | 1095 | 100 | Plus |
RpL15-PE | 204 | CG17420-PE | 1..204 | 1..204 | 1095 | 100 | Plus |