Clone BO11608 Report

Search the DGRC for BO11608

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptRpL15-RA
Protein status:BO11608.pep:
Sequenced Size:646

Clone Sequence Records

BO11608.3prime Sequence

644 bp (643 high quality bases) assembled on 2006-04-19

> BO11608.3prime
ATGGTCTAGAAAGCTTGCTCGTTTTCTGTGCATGTGCTCACGGTTCTTGC
GCTTCCAAGCAGCACGCCTAGATCCACCAATTGTCTGGGAGTATCTATAT
CCCTTGCCAATGCCACGCGAACTTTTTCCAGCTGATGTAAGGCCACGCAA
TTCACGATGCTTGTGGACATGCTTGCAGATCCAGTTAATTTTTGGATCAC
GACGAATAGCACTGTGATGAGTATCAATTAAGATTACTTCAAAATATTTA
TAAGAAGCATCTTGCGCAATCCAATACGAGTTCAAAACTCGCAAGCCGCC
AAGTCTACGACCAACACGTTCCTCAGCAATGGATTGCAAACCACGATATG
GTTTTAACTGGTTTACACCATGACTCTTCGGCTTGCCATAAGTGCATCCT
TTGGGAACTGGACGCTTGCGACCTCCGCGGCGAACACGGATTCTATAAAT
CACGAACCCCTGTTTGGCTCTGTATCCTAAACGTCTTGCTTTATCCGGGC
GAGTAGGTCTTGGCGAACGATGCAATTTCGTTAGTTGGCGGTATTGCCAA
ACGCGAATACGTAGCAAGTAGCGCATCACATCGCTCTGCTTCTTCCTATA
AAGTTCCTGCATGTACCGATAAGCCCCCATGTCGACTGATAACT

BO11608.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:26:33 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
RpL15-RI 950 CG17420-RI 288..899 630..19 3060 100 Minus
RpL15-RH 882 CG17420-RH 220..831 630..19 3060 100 Minus
RpL15-RG 694 CG17420-RG 32..643 630..19 3060 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 27267610..27267919 630..321 1550 100 Minus
3L 28110227 3L 27268090..27268394 323..19 1525 100 Minus
Blast to na_te.dros performed 2015-02-12 11:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 3070..3129 227..288 115 69.4 Plus

BO11608.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:28:55 Download gff for BO11608.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL15-RG 22..649 11..639 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:08:10 Download gff for BO11608.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL15-RG 22..649 11..639 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:08:10 Download gff for BO11608.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 27267607..27267918 322..633 99 -> Minus
3L 27268092..27268400 11..321 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:28:55 Download gff for BO11608.3prime
Subject Subject Range Query Range Percent Splice Strand
3LHet 2398143..2398454 322..633 99 -> Minus
3LHet 2398628..2398936 11..321 98   Minus

BO11608.5prime Sequence

644 bp (643 high quality bases) assembled on 2006-04-19

> BO11608.5prime
GAAGTTATCAGTCGACATGGGGGCTTATCGGTACATGCAGGAACTTTATA
GGAAGAAGCAGAGCGATGTGATGCGCTACTTGCTACGTATTCGCGTTTGG
CAATACCGCCAACTAACGAAATTGCATCGTTCGCCAAGACCTACTCGCCC
GGATAAAGCAAGACGTTTAGGATACAGAGCCAAACAGGGGTTCGTGATTT
ATAGAATCCGTGTTCGCCGCGGAGGTCGCAAGCGTCCAGTTCCCAAAGGA
TGCACTTATGGCAAGCCGAAGAGTCATGGTGTAAACCAGTTAAAACCATA
TCGTGGTTTGCAATCCATTGCTGAGGAACGTGTTGGTCGTAGACTTGGCG
GCTTGCGAGTTTTGAACTCGTATTGGATTGCGCAAGATGCTTCTTATAAA
TATTTTGAAGTAATCTTAATTGATACTCATCACAGTGCTATTCGTCGTGA
TCCAAAAATTAACTGGATCTGCAAGCATGTCCACAAGCATCGTGAATTGC
GTGGCCTTACATCAGCTGGAAAAAGTTCGCGTGGCATTGGCAAGGGATAT
AGATACTCCCAGACAATTGGTGGATCTAGGCGTGCTGCTTGGAAGCGCAA
GAACCGTGAGCACATGCACAGAAAACGAGCAAGCTTTCTAGACC

BO11608.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:26:33 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
RpL15-RI 950 CG17420-RI 288..899 17..628 3060 100 Plus
RpL15-RH 882 CG17420-RH 220..831 17..628 3060 100 Plus
RpL15-RG 694 CG17420-RG 32..643 17..628 3060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 27267610..27267919 17..326 1550 100 Plus
3L 28110227 3L 27268090..27268394 324..628 1525 100 Plus
Blast to na_te.dros performed 2015-02-11 10:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 3070..3129 420..359 115 69.4 Minus

BO11608.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:05:48 Download gff for BO11608.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL15-RG 22..649 8..636 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:16 Download gff for BO11608.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL15-RG 22..649 8..636 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:16 Download gff for BO11608.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 27267607..27267918 14..325 99 -> Plus
3L 27268092..27268400 326..636 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:05:48 Download gff for BO11608.5prime
Subject Subject Range Query Range Percent Splice Strand
3LHet 2398143..2398454 14..325 99 -> Plus
3LHet 2398628..2398936 326..636 98   Plus

BO11608.complete Sequence

646 bp assembled on 2006-10-11

GenBank Submission: FJ632127

> BO11608.complete
GAAGTTATCAGTCGACATGGGGGCTTATCGGTACATGCAGGAACTTTATA
GGAAGAAGCAGAGCGATGTGATGCGCTACTTGCTACGTATTCGCGTTTGG
CAATACCGCCAACTAACGAAATTGCATCGTTCGCCAAGACCTACTCGCCC
GGATAAAGCAAGACGTTTAGGATACAGAGCCAAACAGGGGTTCGTGATTT
ATAGAATCCGTGTTCGCCGCGGAGGTCGCAAGCGTCCAGTTCCCAAAGGA
TGCACTTATGGCAAGCCGAAGAGTCATGGTGTAAACCAGTTAAAACCATA
TCGTGGTTTGCAATCCATTGCTGAGGAACGTGTTGGTCGTAGACTTGGCG
GCTTGCGAGTTTTGAACTCGTATTGGATTGCGCAAGATGCTTCTTATAAA
TATTTTGAAGTAATCTTAATTGATACTCATCACAGTGCTATTCGTCGTGA
TCCAAAAATTAACTGGATCTGCAAGCATGTCCACAAGCATCGTGAATTGC
GTGGCCTTACATCAGCTGGAAAAAGTTCGCGTGGCATTGGCAAGGGATAT
AGATACTCCCAGACAATTGGTGGATCTAGGCGTGCTGCTTGGAAGCGCAA
GAACCGTGAGCACATGCACAGAAAACGAGCAAGCTTTCTAGACCAT

BO11608.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
RpL15-RI 615 CG17420-PI 1..612 17..628 3060 100 Plus
RpL15-RH 615 CG17420-PH 1..612 17..628 3060 100 Plus
RpL15-RG 615 CG17420-PG 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
RpL15-RI 950 CG17420-RI 288..899 17..628 3060 100 Plus
RpL15-RH 882 CG17420-RH 220..831 17..628 3060 100 Plus
RpL15-RG 694 CG17420-RG 32..643 17..628 3060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 27267610..27267919 17..326 1550 100 Plus
3L 28110227 3L 27268090..27268394 324..628 1525 100 Plus
Blast to na_te.dros performed 2014-11-28 01:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 3070..3129 420..359 115 69.4 Minus

BO11608.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:41 Download gff for BO11608.complete
Subject Subject Range Query Range Percent Splice Strand
RpL15-RB 1..615 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:46 Download gff for BO11608.complete
Subject Subject Range Query Range Percent Splice Strand
RpL15-RB 347..967 14..636 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:45 Download gff for BO11608.complete
Subject Subject Range Query Range Percent Splice Strand
RpL15-RG 32..643 17..630 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:41 Download gff for BO11608.complete
Subject Subject Range Query Range Percent Splice Strand
RpL15-RB 347..967 14..636 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:12 Download gff for BO11608.complete
Subject Subject Range Query Range Percent Splice Strand
RpL15-RG 32..643 17..630 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:12 Download gff for BO11608.complete
Subject Subject Range Query Range Percent Splice Strand
3L 27267610..27267918 17..325 100 -> Plus
3L 27268092..27268394 326..630 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:45 Download gff for BO11608.complete
Subject Subject Range Query Range Percent Splice Strand
3LHet 2398146..2398454 17..325 100 -> Plus
3LHet 2398628..2398930 326..630 99   Plus

BO11608.pep Sequence

Translation from 16 to 646

> BO11608.pep
MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARR
LGYRAKQGFVIYRIRVRRGGRKRPVPKGCTYGKPKSHGVNQLKPYRGLQS
IAEERVGRRLGGLRVLNSYWIAQDASYKYFEVILIDTHHSAIRRDPKINW
ICKHVHKHRELRGLTSAGKSSRGIGKGYRYSQTIGGSRRAAWKRKNREHM
HRKRASFLDH

BO11608.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
RpL15-PI 204 CG17420-PI 1..204 1..204 1095 100 Plus
RpL15-PH 204 CG17420-PH 1..204 1..204 1095 100 Plus
RpL15-PG 204 CG17420-PG 1..204 1..204 1095 100 Plus
RpL15-PF 204 CG17420-PF 1..204 1..204 1095 100 Plus
RpL15-PE 204 CG17420-PE 1..204 1..204 1095 100 Plus