Clone BO11609 Report

Search the DGRC for BO11609

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG12730-RA
Protein status:BO11609.pep:
Sequenced Size:478

Clone Sequence Records

BO11609.3prime Sequence

476 bp (475 high quality bases) assembled on 2006-04-19

> BO11609.3prime
ATGGTCTAGAAAGCTTGCTATCGTTTGGGTGGCCACCTCCCGCTGGCGAC
TGCGCCGATAGTTTCCATAGGCCTCCAGTCCGTTGATGCAAAATGCTGTC
AGGCCAAAGAACGCCGCCGCCGTATAGGCTCCAATATCCAGGGAGAGTAC
GAGTCCGGAGGCCGTGAAGTAGGCCAGGGCCAATGAGGAGTGCACCGCCA
GGGACCAGAGCGTGGGATCGCATCGGCAGAACTGGCGCTGCCACAACCGG
AGATACCTGGCCAGGAGCAGGCAGCCGGTGGCCACGAATCCGATGGTGAC
TACGGCCAGGTAGAAACTGCCGCGGAAATTGCTCACGCGCACCGGTCCGC
AGATGATGCACAATATTCCAACAAAGCTGCACAGCAAACAGGCCAGCTTG
CACAGGCCCGGCATGCTGAGCAGGTATTTGCGATCGTAGTCCTGGGTTCC
CGTCAACGACATGTCGACTGATAACT

BO11609.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12730-PA 447 CG12730-RA 1..444 462..19 2220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12730-RB 1892 CG12730-RB 814..1257 462..19 2220 100 Minus
CG12730-RA 1241 CG12730-RA 163..606 462..19 2220 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5517571..5517844 385..112 1370 100 Minus
X 23542271 X 5518043..5518136 112..19 470 100 Minus
X 23542271 X 5517421..5517498 462..385 390 100 Minus
Blast to na_te.dros performed on 2015-01-31 20:06:34 has no hits.

BO11609.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:20 Download gff for BO11609.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12730-PA 1..447 18..462 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:50 Download gff for BO11609.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12730-PA 1..447 18..462 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:36:17 Download gff for BO11609.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 159..613 11..466 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:49:03 Download gff for BO11609.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 159..613 11..466 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:49:03 Download gff for BO11609.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5517572..5517844 112..384 100 -> Minus
X 5518044..5518143 11..111 96   Minus
X 5517417..5517498 385..466 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:36:17 Download gff for BO11609.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5411605..5411877 112..384 100 -> Minus
arm_X 5412077..5412176 11..111 96   Minus
arm_X 5411450..5411531 385..466 97 -> Minus

BO11609.5prime Sequence

476 bp (475 high quality bases) assembled on 2006-04-19

> BO11609.5prime
GAAGTTATCAGTCGACATGTCGTTGACGGGAACCCAGGACTACGATCGCA
AATACCTGCTCAGCATGCCGGGCCTGTGCAAGCTGGCCTGTTTGCTGTGC
AGCTTTGTTGGAATATTGTGCATCATCTGCGGACCGGTGCGCGTGAGCAA
TTTCCGCGGCAGTTTCTACCTGGCCGTAGTCACCATCGGATTCGTGGCCA
CCGGCTGCCTGCTCCTGGCCAGGTATCTCCGGTTGTGGCAGCGCCAGTTC
TGCCGATGCGATCCCACGCTCTGGTCCCTGGCGGTGCACTCCTCATTGGC
CCTGGCCTACTTCACGGCCTCCGGACTCGTACTCTCCCTGGATATTGGAG
CCTATACGGCGGCGGCGTTCTTTGGCCTGACAGCATTTTGCATCAACGGA
CTGGAGGCCTATGGAAACTATCGGCGCAGTCGCCAGCGGGAGGTGGCCAC
CCAAACGATAGCAAGCTTTCTAGACC

BO11609.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12730-PA 447 CG12730-RA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12730-RB 1892 CG12730-RB 814..1257 17..460 2220 100 Plus
CG12730-RA 1241 CG12730-RA 163..606 17..460 2220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5517571..5517844 94..367 1370 100 Plus
X 23542271 X 5518043..5518136 367..460 470 100 Plus
X 23542271 X 5517421..5517498 17..94 390 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:56:08 has no hits.

BO11609.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:21 Download gff for BO11609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12730-PA 1..447 17..461 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:52 Download gff for BO11609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12730-PA 1..447 17..461 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:40:02 Download gff for BO11609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 159..613 13..468 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:39 Download gff for BO11609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 159..613 13..468 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:39 Download gff for BO11609.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5517417..5517498 13..94 97 -> Plus
X 5517572..5517844 95..367 100 -> Plus
X 5518044..5518143 368..468 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:40:02 Download gff for BO11609.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5411450..5411531 13..94 97 -> Plus
arm_X 5411605..5411877 95..367 100 -> Plus
arm_X 5412077..5412176 368..468 96   Plus

BO11609.complete Sequence

478 bp assembled on 2007-06-22

GenBank Submission: FJ638685

> BO11609.complete
GAAGTTATCAGTCGACATGTCGTTGACGGGAACCCAGGACTACGATCGCA
AATACCTGCTCAGCATGCCGGGCCTGTGCAAGCTGGCCTGTTTGCTGTGC
AGCTTTGTTGGAATATTGTGCATCATCTGCGGACCGGTGCGCGTGAGCAA
TTTCCGCGGCAGTTTCTACCTGGCCGTAGTCACCATCGGATTCGTGGCCA
CCGGCTGCCTGCTCCTGGCCAGGTATCTCCGGTTGTGGCAGCGCCAGTTC
TGCCGATGCGATCCCACGCTCTGGTCCCTGGCGGTGCACTCCTCATTGGC
CCTGGCCTACTTCACGGCCTCCGGACTCGTACTCTCCCTGGATATTGGAG
CCTATACGGCGGCGGCGTTCTTTGGCCTGACAGCATTTTGCATCAACGGA
CTGGAGGCCTATGGAAACTATCGGCGCAGTCGCCAGCGGGAGGTGGCCAC
CCAAACGATAGCAAGCTTTCTAGACCAT

BO11609.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12730-RB 447 CG12730-PB 1..444 17..460 2220 100 Plus
CG12730-RA 447 CG12730-PA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12730-RB 1892 CG12730-RB 814..1257 17..460 2220 100 Plus
CG12730-RA 1241 CG12730-RA 163..606 17..460 2220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5517571..5517844 94..367 1370 100 Plus
X 23542271 X 5518043..5518136 367..460 470 100 Plus
X 23542271 X 5517421..5517498 17..94 390 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:36:27 has no hits.

BO11609.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:38 Download gff for BO11609.complete
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 1..447 17..461 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:42 Download gff for BO11609.complete
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 157..611 13..468 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:57 Download gff for BO11609.complete
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 163..606 17..462 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:38 Download gff for BO11609.complete
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 157..611 13..468 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:44 Download gff for BO11609.complete
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 163..606 17..462 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:44 Download gff for BO11609.complete
Subject Subject Range Query Range Percent Splice Strand
X 5517421..5517498 17..94 100 -> Plus
X 5517572..5517844 95..367 100 -> Plus
X 5518044..5518136 368..462 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:57 Download gff for BO11609.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5411454..5411531 17..94 100 -> Plus
arm_X 5411605..5411877 95..367 100 -> Plus
arm_X 5412077..5412169 368..462 97   Plus

BO11609.pep Sequence

Translation from 16 to 478

> BO11609.pep
MSLTGTQDYDRKYLLSMPGLCKLACLLCSFVGILCIICGPVRVSNFRGSF
YLAVVTIGFVATGCLLLARYLRLWQRQFCRCDPTLWSLAVHSSLALAYFT
ASGLVLSLDIGAYTAAAFFGLTAFCINGLEAYGNYRRSRQREVATQTIAS
FLDH

BO11609.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12730-PB 148 CG12730-PB 1..148 1..148 776 100 Plus
CG12730-PA 148 CG12730-PA 1..148 1..148 776 100 Plus