Clone Sequence Records
BO11609.3prime Sequence
476 bp (475 high quality bases) assembled on 2006-04-19
> BO11609.3prime
ATGGTCTAGAAAGCTTGCTATCGTTTGGGTGGCCACCTCCCGCTGGCGAC
TGCGCCGATAGTTTCCATAGGCCTCCAGTCCGTTGATGCAAAATGCTGTC
AGGCCAAAGAACGCCGCCGCCGTATAGGCTCCAATATCCAGGGAGAGTAC
GAGTCCGGAGGCCGTGAAGTAGGCCAGGGCCAATGAGGAGTGCACCGCCA
GGGACCAGAGCGTGGGATCGCATCGGCAGAACTGGCGCTGCCACAACCGG
AGATACCTGGCCAGGAGCAGGCAGCCGGTGGCCACGAATCCGATGGTGAC
TACGGCCAGGTAGAAACTGCCGCGGAAATTGCTCACGCGCACCGGTCCGC
AGATGATGCACAATATTCCAACAAAGCTGCACAGCAAACAGGCCAGCTTG
CACAGGCCCGGCATGCTGAGCAGGTATTTGCGATCGTAGTCCTGGGTTCC
CGTCAACGACATGTCGACTGATAACT
BO11609.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12730-PA | 447 | CG12730-RA | 1..444 | 462..19 | 2220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12730-RB | 1892 | CG12730-RB | 814..1257 | 462..19 | 2220 | 100 | Minus |
CG12730-RA | 1241 | CG12730-RA | 163..606 | 462..19 | 2220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:06:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5517571..5517844 | 385..112 | 1370 | 100 | Minus |
X | 23542271 | X | 5518043..5518136 | 112..19 | 470 | 100 | Minus |
X | 23542271 | X | 5517421..5517498 | 462..385 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 20:06:34 has no hits.
BO11609.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:20 Download gff for
BO11609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-PA | 1..447 | 18..462 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:50 Download gff for
BO11609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-PA | 1..447 | 18..462 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:36:17 Download gff for
BO11609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-RA | 159..613 | 11..466 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:49:03 Download gff for
BO11609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-RA | 159..613 | 11..466 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:49:03 Download gff for
BO11609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5517572..5517844 | 112..384 | 100 | -> | Minus |
X | 5518044..5518143 | 11..111 | 96 | | Minus |
X | 5517417..5517498 | 385..466 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:36:17 Download gff for
BO11609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5411605..5411877 | 112..384 | 100 | -> | Minus |
arm_X | 5412077..5412176 | 11..111 | 96 | | Minus |
arm_X | 5411450..5411531 | 385..466 | 97 | -> | Minus |
BO11609.5prime Sequence
476 bp (475 high quality bases) assembled on 2006-04-19
> BO11609.5prime
GAAGTTATCAGTCGACATGTCGTTGACGGGAACCCAGGACTACGATCGCA
AATACCTGCTCAGCATGCCGGGCCTGTGCAAGCTGGCCTGTTTGCTGTGC
AGCTTTGTTGGAATATTGTGCATCATCTGCGGACCGGTGCGCGTGAGCAA
TTTCCGCGGCAGTTTCTACCTGGCCGTAGTCACCATCGGATTCGTGGCCA
CCGGCTGCCTGCTCCTGGCCAGGTATCTCCGGTTGTGGCAGCGCCAGTTC
TGCCGATGCGATCCCACGCTCTGGTCCCTGGCGGTGCACTCCTCATTGGC
CCTGGCCTACTTCACGGCCTCCGGACTCGTACTCTCCCTGGATATTGGAG
CCTATACGGCGGCGGCGTTCTTTGGCCTGACAGCATTTTGCATCAACGGA
CTGGAGGCCTATGGAAACTATCGGCGCAGTCGCCAGCGGGAGGTGGCCAC
CCAAACGATAGCAAGCTTTCTAGACC
BO11609.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12730-PA | 447 | CG12730-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:56:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12730-RB | 1892 | CG12730-RB | 814..1257 | 17..460 | 2220 | 100 | Plus |
CG12730-RA | 1241 | CG12730-RA | 163..606 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5517571..5517844 | 94..367 | 1370 | 100 | Plus |
X | 23542271 | X | 5518043..5518136 | 367..460 | 470 | 100 | Plus |
X | 23542271 | X | 5517421..5517498 | 17..94 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:56:08 has no hits.
BO11609.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:21 Download gff for
BO11609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-PA | 1..447 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:52 Download gff for
BO11609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-PA | 1..447 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:40:02 Download gff for
BO11609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-RA | 159..613 | 13..468 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:39 Download gff for
BO11609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-RA | 159..613 | 13..468 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:39 Download gff for
BO11609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5517417..5517498 | 13..94 | 97 | -> | Plus |
X | 5517572..5517844 | 95..367 | 100 | -> | Plus |
X | 5518044..5518143 | 368..468 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:40:02 Download gff for
BO11609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5411450..5411531 | 13..94 | 97 | -> | Plus |
arm_X | 5411605..5411877 | 95..367 | 100 | -> | Plus |
arm_X | 5412077..5412176 | 368..468 | 96 | | Plus |
BO11609.complete Sequence
478 bp assembled on 2007-06-22
GenBank Submission: FJ638685
> BO11609.complete
GAAGTTATCAGTCGACATGTCGTTGACGGGAACCCAGGACTACGATCGCA
AATACCTGCTCAGCATGCCGGGCCTGTGCAAGCTGGCCTGTTTGCTGTGC
AGCTTTGTTGGAATATTGTGCATCATCTGCGGACCGGTGCGCGTGAGCAA
TTTCCGCGGCAGTTTCTACCTGGCCGTAGTCACCATCGGATTCGTGGCCA
CCGGCTGCCTGCTCCTGGCCAGGTATCTCCGGTTGTGGCAGCGCCAGTTC
TGCCGATGCGATCCCACGCTCTGGTCCCTGGCGGTGCACTCCTCATTGGC
CCTGGCCTACTTCACGGCCTCCGGACTCGTACTCTCCCTGGATATTGGAG
CCTATACGGCGGCGGCGTTCTTTGGCCTGACAGCATTTTGCATCAACGGA
CTGGAGGCCTATGGAAACTATCGGCGCAGTCGCCAGCGGGAGGTGGCCAC
CCAAACGATAGCAAGCTTTCTAGACCAT
BO11609.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12730-RB | 447 | CG12730-PB | 1..444 | 17..460 | 2220 | 100 | Plus |
CG12730-RA | 447 | CG12730-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:36:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12730-RB | 1892 | CG12730-RB | 814..1257 | 17..460 | 2220 | 100 | Plus |
CG12730-RA | 1241 | CG12730-RA | 163..606 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:36:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5517571..5517844 | 94..367 | 1370 | 100 | Plus |
X | 23542271 | X | 5518043..5518136 | 367..460 | 470 | 100 | Plus |
X | 23542271 | X | 5517421..5517498 | 17..94 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:36:27 has no hits.
BO11609.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:38 Download gff for
BO11609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-RA | 1..447 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:42 Download gff for
BO11609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-RA | 157..611 | 13..468 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:57 Download gff for
BO11609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-RA | 163..606 | 17..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:38 Download gff for
BO11609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-RA | 157..611 | 13..468 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:44 Download gff for
BO11609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12730-RA | 163..606 | 17..462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:44 Download gff for
BO11609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5517421..5517498 | 17..94 | 100 | -> | Plus |
X | 5517572..5517844 | 95..367 | 100 | -> | Plus |
X | 5518044..5518136 | 368..462 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:57 Download gff for
BO11609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5411454..5411531 | 17..94 | 100 | -> | Plus |
arm_X | 5411605..5411877 | 95..367 | 100 | -> | Plus |
arm_X | 5412077..5412169 | 368..462 | 97 | | Plus |
BO11609.pep Sequence
Translation from 16 to 478
> BO11609.pep
MSLTGTQDYDRKYLLSMPGLCKLACLLCSFVGILCIICGPVRVSNFRGSF
YLAVVTIGFVATGCLLLARYLRLWQRQFCRCDPTLWSLAVHSSLALAYFT
ASGLVLSLDIGAYTAAAFFGLTAFCINGLEAYGNYRRSRQREVATQTIAS
FLDH
BO11609.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12730-PB | 148 | CG12730-PB | 1..148 | 1..148 | 776 | 100 | Plus |
CG12730-PA | 148 | CG12730-PA | 1..148 | 1..148 | 776 | 100 | Plus |