Clone Sequence Records
BO11610.3prime Sequence
563 bp (562 high quality bases) assembled on 2006-04-19
> BO11610.3prime
ATGGTCTAGAAAGCTTGCGTGGGTAGCCCCGGACCTGTGGGCCAGGAACA
GGAAGTACGTGCCCGCCGCGTATGCCAGGAAATTGAAGAGTCCAAAGACA
CCGGCGGCGGTATTCGAACCGGAACCCTTGCCCGTGGCATCCGACCATCT
GGCCAGCTGGACGATGAATCCGATGAAGTACAGCAGCGTCAGCACAGCGG
TGGTGATCAGCTCCGAGAATATCCAGTTGACGGCCACGTTGAGGGCCTCG
CGAATGCCCAGGAAATAGGCGGCGATCAGCAGAATGTTGATGATGAACGA
GATGACGATGACGAACATGAAGAACGAGGTGGCCGAGGCCAGTGGAGGAG
CTGCCAGGGCCATGCAGATGATGCCCAGCACAAACTCCACAATTTTGATG
ATGCCCGGTATGGTGCGGAAATAGTCGATGTTGAGGCGAATGGCGCTCCA
GAAGCCGCCACCGCTGCCAACGGTCGGGTTCGCTCCACCTGGCGGTCCGT
TCGTCGTTGTTGTTGTTGTGCGCTCGATATTGACAACGGTCTCGACCATG
TCGACTGATAACT
BO11610.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15211-PA | 534 | CG15211-RA | 1..531 | 549..19 | 2630 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15211-RE | 1135 | CG15211-RE | 232..762 | 549..19 | 2640 | 99.8 | Minus |
CG15211-RD | 1136 | CG15211-RD | 233..763 | 549..19 | 2640 | 99.8 | Minus |
CG15211-RC | 1197 | CG15211-RC | 294..824 | 549..19 | 2640 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10778210..10778405 | 214..19 | 965 | 99.5 | Minus |
X | 23542271 | X | 10772999..10773169 | 549..379 | 855 | 100 | Minus |
X | 23542271 | X | 10777961..10778129 | 381..213 | 845 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 22:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 1745..1803 | 518..460 | 107 | 69.4 | Minus |
BO11610.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:22 Download gff for
BO11610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-PA | 1..534 | 15..549 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:54 Download gff for
BO11610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-PA | 1..534 | 15..549 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:50:43 Download gff for
BO11610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-RC | 287..828 | 14..557 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:49 Download gff for
BO11610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-RC | 287..828 | 14..557 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:49 Download gff for
BO11610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10772992..10773166 | 382..557 | 97 | -> | Minus |
X | 10777961..10778128 | 214..381 | 100 | -> | Minus |
X | 10778211..10778409 | 14..213 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:50:43 Download gff for
BO11610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10667025..10667199 | 382..557 | 97 | -> | Minus |
arm_X | 10671994..10672161 | 214..381 | 100 | -> | Minus |
arm_X | 10672244..10672442 | 14..213 | 98 | | Minus |
BO11610.5prime Sequence
563 bp (562 high quality bases) assembled on 2006-04-19
> BO11610.5prime
GAAGTTATCAGTCGACATGGTCGAGACCGTTGTCAATATCGAGCGCACAA
CAACAACAACGACGAACGGACCGCCAGGTGGAGCGAACCCGACCGTTGGC
AGCGGTGGCGGCTTCTGGAGCGCCATTCGCCTCAACATCGACTATTTCCG
CACCATACCGGGCATCATCAAAATTGTGGAGTTTGTGCTGGGCATCATCT
GCATGGCCCTGGCAGCTCCTCCACTGGCCTCGGCCACCTCGTTCTTCATG
TTCGTCATCGTCATCTCGTTCATCATCAACATTCTGCTGATCGCCGCCTA
TTTCCTGGGCATTCGCGAGGCCCTCAACGTGGCCGTCAACTGGATATTCT
CGGAGCTGATCACCACCGCTGTGCTGACGCTGCTGTACTTCATCGGATTC
ATCGTCCAGCTGGCCAGATGGTCGGATGCCACGGGCAAGGGTTCCGGTTC
GAATACCGCCGCCGGTGTCTTTGGACTCTTCAATTTCCTGGCATACGCGG
CGGGCACGTACTTCCTGTTCCTGGCCCACAGGTCCGGGGCTACCCACGCA
AGCTTTCTAGACC
BO11610.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15211-PA | 534 | CG15211-RA | 1..531 | 17..547 | 2630 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:48:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15211-RE | 1135 | CG15211-RE | 232..762 | 17..547 | 2640 | 99.8 | Plus |
CG15211-RD | 1136 | CG15211-RD | 233..763 | 17..547 | 2640 | 99.8 | Plus |
CG15211-RC | 1197 | CG15211-RC | 294..824 | 17..547 | 2640 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:48:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10778210..10778405 | 352..547 | 965 | 99.5 | Plus |
X | 23542271 | X | 10772999..10773169 | 17..187 | 855 | 100 | Plus |
X | 23542271 | X | 10777961..10778129 | 185..353 | 845 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 20:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 1745..1803 | 48..106 | 107 | 69.4 | Plus |
BO11610.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:23 Download gff for
BO11610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-PA | 1..534 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:55 Download gff for
BO11610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-PA | 1..534 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:01:07 Download gff for
BO11610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-RC | 287..828 | 9..552 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:23:27 Download gff for
BO11610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-RC | 287..828 | 9..552 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:23:27 Download gff for
BO11610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10778211..10778409 | 353..552 | 98 | | Plus |
X | 10772992..10773166 | 9..184 | 97 | -> | Plus |
X | 10777961..10778128 | 185..352 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:01:07 Download gff for
BO11610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10667025..10667199 | 9..184 | 97 | -> | Plus |
arm_X | 10671994..10672161 | 185..352 | 100 | -> | Plus |
arm_X | 10672244..10672442 | 353..552 | 98 | | Plus |
BO11610.complete Sequence
565 bp assembled on 2007-06-22
GenBank Submission: FJ632128
> BO11610.complete
GAAGTTATCAGTCGACATGGTCGAGACCGTTGTCAATATCGAGCGCACAA
CAACAACAACGACGAACGGACCGCCAGGTGGAGCGAACCCGACCGTTGGC
AGCGGTGGCGGCTTCTGGAGCGCCATTCGCCTCAACATCGACTATTTCCG
CACCATACCGGGCATCATCAAAATTGTGGAGTTTGTGCTGGGCATCATCT
GCATGGCCCTGGCAGCTCCTCCACTGGCCTCGGCCACCTCGTTCTTCATG
TTCGTCATCGTCATCTCGTTCATCATCAACATTCTGCTGATCGCCGCCTA
TTTCCTGGGCATTCGCGAGGCCCTCAACGTGGCCGTCAACTGGATATTCT
CGGAGCTGATCACCACCGCTGTGCTGACGCTGCTGTACTTCATCGGATTC
ATCGTCCAGCTGGCCAGATGGTCGGATGCCACGGGCAAGGGTTCCGGTTC
GAATACCGCCGCCGGTGTCTTTGGACTCTTCAATTTCCTGGCATACGCGG
CGGGCACGTACTTCCTGTTCCTGGCCCACAGGTCCGGGGCTACCCACGCA
AGCTTTCTAGACCAT
BO11610.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15211-RE | 534 | CG15211-PE | 1..531 | 17..547 | 2640 | 99.8 | Plus |
CG15211-RD | 534 | CG15211-PD | 1..531 | 17..547 | 2640 | 99.8 | Plus |
CG15211-RC | 534 | CG15211-PC | 1..531 | 17..547 | 2640 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15211-RE | 1135 | CG15211-RE | 232..762 | 17..547 | 2640 | 99.8 | Plus |
CG15211-RD | 1136 | CG15211-RD | 233..763 | 17..547 | 2640 | 99.8 | Plus |
CG15211-RC | 1197 | CG15211-RC | 294..824 | 17..547 | 2640 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10778210..10778405 | 352..547 | 965 | 99.5 | Plus |
X | 23542271 | X | 10772999..10773169 | 17..187 | 855 | 100 | Plus |
X | 23542271 | X | 10777961..10778129 | 185..353 | 845 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 1745..1803 | 48..106 | 107 | 69.4 | Plus |
BO11610.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:39 Download gff for
BO11610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-RC | 1..534 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:44 Download gff for
BO11610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-RA | 278..819 | 9..552 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:27 Download gff for
BO11610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-RC | 294..824 | 17..549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:39 Download gff for
BO11610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-RA | 278..819 | 9..552 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:16 Download gff for
BO11610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15211-RC | 294..824 | 17..549 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:16 Download gff for
BO11610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10772999..10773166 | 17..184 | 100 | -> | Plus |
X | 10777961..10778128 | 185..352 | 100 | -> | Plus |
X | 10778211..10778405 | 353..549 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:27 Download gff for
BO11610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10667032..10667199 | 17..184 | 100 | -> | Plus |
arm_X | 10671994..10672161 | 185..352 | 100 | -> | Plus |
arm_X | 10672244..10672438 | 353..549 | 98 | | Plus |
BO11610.pep Sequence
Translation from 16 to 565
> BO11610.pep
MVETVVNIERTTTTTTNGPPGGANPTVGSGGGFWSAIRLNIDYFRTIPGI
IKIVEFVLGIICMALAAPPLASATSFFMFVIVISFIINILLIAAYFLGIR
EALNVAVNWIFSELITTAVLTLLYFIGFIVQLARWSDATGKGSGSNTAAG
VFGLFNFLAYAAGTYFLFLAHRSGATHASFLDH
BO11610.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:40:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15211-PE | 177 | CG15211-PE | 1..177 | 1..177 | 899 | 100 | Plus |
CG15211-PD | 177 | CG15211-PD | 1..177 | 1..177 | 899 | 100 | Plus |
CG15211-PC | 177 | CG15211-PC | 1..177 | 1..177 | 899 | 100 | Plus |
CG15211-PB | 177 | CG15211-PB | 1..177 | 1..177 | 899 | 100 | Plus |
CG15211-PA | 177 | CG15211-PA | 1..177 | 1..177 | 899 | 100 | Plus |