Clone BO11610 Report

Search the DGRC for BO11610

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG15211-RA
Protein status:BO11610.pep:
Sequenced Size:565

Clone Sequence Records

BO11610.3prime Sequence

563 bp (562 high quality bases) assembled on 2006-04-19

> BO11610.3prime
ATGGTCTAGAAAGCTTGCGTGGGTAGCCCCGGACCTGTGGGCCAGGAACA
GGAAGTACGTGCCCGCCGCGTATGCCAGGAAATTGAAGAGTCCAAAGACA
CCGGCGGCGGTATTCGAACCGGAACCCTTGCCCGTGGCATCCGACCATCT
GGCCAGCTGGACGATGAATCCGATGAAGTACAGCAGCGTCAGCACAGCGG
TGGTGATCAGCTCCGAGAATATCCAGTTGACGGCCACGTTGAGGGCCTCG
CGAATGCCCAGGAAATAGGCGGCGATCAGCAGAATGTTGATGATGAACGA
GATGACGATGACGAACATGAAGAACGAGGTGGCCGAGGCCAGTGGAGGAG
CTGCCAGGGCCATGCAGATGATGCCCAGCACAAACTCCACAATTTTGATG
ATGCCCGGTATGGTGCGGAAATAGTCGATGTTGAGGCGAATGGCGCTCCA
GAAGCCGCCACCGCTGCCAACGGTCGGGTTCGCTCCACCTGGCGGTCCGT
TCGTCGTTGTTGTTGTTGTGCGCTCGATATTGACAACGGTCTCGACCATG
TCGACTGATAACT

BO11610.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG15211-PA 534 CG15211-RA 1..531 549..19 2630 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15211-RE 1135 CG15211-RE 232..762 549..19 2640 99.8 Minus
CG15211-RD 1136 CG15211-RD 233..763 549..19 2640 99.8 Minus
CG15211-RC 1197 CG15211-RC 294..824 549..19 2640 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10778210..10778405 214..19 965 99.5 Minus
X 23542271 X 10772999..10773169 549..379 855 100 Minus
X 23542271 X 10777961..10778129 381..213 845 100 Minus
Blast to na_te.dros performed 2015-02-10 22:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 1745..1803 518..460 107 69.4 Minus

BO11610.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:22 Download gff for BO11610.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15211-PA 1..534 15..549 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:54 Download gff for BO11610.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15211-PA 1..534 15..549 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:50:43 Download gff for BO11610.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15211-RC 287..828 14..557 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:49 Download gff for BO11610.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15211-RC 287..828 14..557 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:49 Download gff for BO11610.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10772992..10773166 382..557 97 -> Minus
X 10777961..10778128 214..381 100 -> Minus
X 10778211..10778409 14..213 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:50:43 Download gff for BO11610.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10667025..10667199 382..557 97 -> Minus
arm_X 10671994..10672161 214..381 100 -> Minus
arm_X 10672244..10672442 14..213 98   Minus

BO11610.5prime Sequence

563 bp (562 high quality bases) assembled on 2006-04-19

> BO11610.5prime
GAAGTTATCAGTCGACATGGTCGAGACCGTTGTCAATATCGAGCGCACAA
CAACAACAACGACGAACGGACCGCCAGGTGGAGCGAACCCGACCGTTGGC
AGCGGTGGCGGCTTCTGGAGCGCCATTCGCCTCAACATCGACTATTTCCG
CACCATACCGGGCATCATCAAAATTGTGGAGTTTGTGCTGGGCATCATCT
GCATGGCCCTGGCAGCTCCTCCACTGGCCTCGGCCACCTCGTTCTTCATG
TTCGTCATCGTCATCTCGTTCATCATCAACATTCTGCTGATCGCCGCCTA
TTTCCTGGGCATTCGCGAGGCCCTCAACGTGGCCGTCAACTGGATATTCT
CGGAGCTGATCACCACCGCTGTGCTGACGCTGCTGTACTTCATCGGATTC
ATCGTCCAGCTGGCCAGATGGTCGGATGCCACGGGCAAGGGTTCCGGTTC
GAATACCGCCGCCGGTGTCTTTGGACTCTTCAATTTCCTGGCATACGCGG
CGGGCACGTACTTCCTGTTCCTGGCCCACAGGTCCGGGGCTACCCACGCA
AGCTTTCTAGACC

BO11610.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15211-PA 534 CG15211-RA 1..531 17..547 2630 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG15211-RE 1135 CG15211-RE 232..762 17..547 2640 99.8 Plus
CG15211-RD 1136 CG15211-RD 233..763 17..547 2640 99.8 Plus
CG15211-RC 1197 CG15211-RC 294..824 17..547 2640 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10778210..10778405 352..547 965 99.5 Plus
X 23542271 X 10772999..10773169 17..187 855 100 Plus
X 23542271 X 10777961..10778129 185..353 845 100 Plus
Blast to na_te.dros performed 2015-02-10 20:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 1745..1803 48..106 107 69.4 Plus

BO11610.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:23 Download gff for BO11610.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15211-PA 1..534 17..551 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:55 Download gff for BO11610.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15211-PA 1..534 17..551 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:01:07 Download gff for BO11610.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15211-RC 287..828 9..552 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:23:27 Download gff for BO11610.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15211-RC 287..828 9..552 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:23:27 Download gff for BO11610.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10778211..10778409 353..552 98   Plus
X 10772992..10773166 9..184 97 -> Plus
X 10777961..10778128 185..352 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:01:07 Download gff for BO11610.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10667025..10667199 9..184 97 -> Plus
arm_X 10671994..10672161 185..352 100 -> Plus
arm_X 10672244..10672442 353..552 98   Plus

BO11610.complete Sequence

565 bp assembled on 2007-06-22

GenBank Submission: FJ632128

> BO11610.complete
GAAGTTATCAGTCGACATGGTCGAGACCGTTGTCAATATCGAGCGCACAA
CAACAACAACGACGAACGGACCGCCAGGTGGAGCGAACCCGACCGTTGGC
AGCGGTGGCGGCTTCTGGAGCGCCATTCGCCTCAACATCGACTATTTCCG
CACCATACCGGGCATCATCAAAATTGTGGAGTTTGTGCTGGGCATCATCT
GCATGGCCCTGGCAGCTCCTCCACTGGCCTCGGCCACCTCGTTCTTCATG
TTCGTCATCGTCATCTCGTTCATCATCAACATTCTGCTGATCGCCGCCTA
TTTCCTGGGCATTCGCGAGGCCCTCAACGTGGCCGTCAACTGGATATTCT
CGGAGCTGATCACCACCGCTGTGCTGACGCTGCTGTACTTCATCGGATTC
ATCGTCCAGCTGGCCAGATGGTCGGATGCCACGGGCAAGGGTTCCGGTTC
GAATACCGCCGCCGGTGTCTTTGGACTCTTCAATTTCCTGGCATACGCGG
CGGGCACGTACTTCCTGTTCCTGGCCCACAGGTCCGGGGCTACCCACGCA
AGCTTTCTAGACCAT

BO11610.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG15211-RE 534 CG15211-PE 1..531 17..547 2640 99.8 Plus
CG15211-RD 534 CG15211-PD 1..531 17..547 2640 99.8 Plus
CG15211-RC 534 CG15211-PC 1..531 17..547 2640 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG15211-RE 1135 CG15211-RE 232..762 17..547 2640 99.8 Plus
CG15211-RD 1136 CG15211-RD 233..763 17..547 2640 99.8 Plus
CG15211-RC 1197 CG15211-RC 294..824 17..547 2640 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10778210..10778405 352..547 965 99.5 Plus
X 23542271 X 10772999..10773169 17..187 855 100 Plus
X 23542271 X 10777961..10778129 185..353 845 100 Plus
Blast to na_te.dros performed 2014-11-27 20:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 1745..1803 48..106 107 69.4 Plus

BO11610.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:39 Download gff for BO11610.complete
Subject Subject Range Query Range Percent Splice Strand
CG15211-RC 1..534 17..551 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:44 Download gff for BO11610.complete
Subject Subject Range Query Range Percent Splice Strand
CG15211-RA 278..819 9..552 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:27 Download gff for BO11610.complete
Subject Subject Range Query Range Percent Splice Strand
CG15211-RC 294..824 17..549 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:39 Download gff for BO11610.complete
Subject Subject Range Query Range Percent Splice Strand
CG15211-RA 278..819 9..552 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:16 Download gff for BO11610.complete
Subject Subject Range Query Range Percent Splice Strand
CG15211-RC 294..824 17..549 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:16 Download gff for BO11610.complete
Subject Subject Range Query Range Percent Splice Strand
X 10772999..10773166 17..184 100 -> Plus
X 10777961..10778128 185..352 100 -> Plus
X 10778211..10778405 353..549 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:27 Download gff for BO11610.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10667032..10667199 17..184 100 -> Plus
arm_X 10671994..10672161 185..352 100 -> Plus
arm_X 10672244..10672438 353..549 98   Plus

BO11610.pep Sequence

Translation from 16 to 565

> BO11610.pep
MVETVVNIERTTTTTTNGPPGGANPTVGSGGGFWSAIRLNIDYFRTIPGI
IKIVEFVLGIICMALAAPPLASATSFFMFVIVISFIINILLIAAYFLGIR
EALNVAVNWIFSELITTAVLTLLYFIGFIVQLARWSDATGKGSGSNTAAG
VFGLFNFLAYAAGTYFLFLAHRSGATHASFLDH

BO11610.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15211-PE 177 CG15211-PE 1..177 1..177 899 100 Plus
CG15211-PD 177 CG15211-PD 1..177 1..177 899 100 Plus
CG15211-PC 177 CG15211-PC 1..177 1..177 899 100 Plus
CG15211-PB 177 CG15211-PB 1..177 1..177 899 100 Plus
CG15211-PA 177 CG15211-PA 1..177 1..177 899 100 Plus