Clone BO11611 Report

Search the DGRC for BO11611

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG13472-RA
Protein status:BO11611.pep: Imported from assembly
Sequenced Size:2542

Clone Sequence Records

BO11611.complete Sequence

2542 bp assembled on 2010-04-13

GenBank Submission: KX794305

> BO11611.complete
GAAGTTATCAGTCGACATGGAATTAGGCAAGAAACTACGAGAAGTCGGGT
GGTACCTGACAGAGGAGGGCCTTAAAATCGTGACAACAGCCGTCGGCAGC
GAGGATGTCCGGAAAATAGTCAATGATGCACTGAATCGAGATCTGCGCGA
TATTGGCGGTGGCGCACTGCCCGCGAAACGCGAAGATGCCACTTTGCCCG
GTAAAATTGTGCTGCAGGTTCAGCGTGTGCGAAATATTGCCGCTCCCAAG
GCGAATGAGGAATCGAAGGCGGCGCCACGCCTCCTTCAGTTGGATCTGAG
TGATGGGCAGAATTCCATAAAGGCCTTGGAGCTGGAGCCAGTTCCCCAAC
TGAATCTCAATGTGGCTCCCGGAAGCAAGATCTATTTCAAGGCCGAGAAA
CTGCAGCTTATGCAGGGATTCCTGCTGCTAAAGTCCAGTGAAATTCAGCT
GCTCGGCGGCCGTGTGGATGCACTCTACGAGAAATGGGATCTGGCCAGGA
CCATGATGAGATATGCGCGCAGTGGGCGCCCCTTGAATGGGACATCAGCG
CCACCCCCGTGGGTGGCATTTGGCCGAAAAATCGATAGCAACGCCGAAAG
CGAAATGAACTTTAAGAGCCTGGGCGAGGGCGACAAGGACAAGCCGGCAA
AGGAGAACGAAGAGTTCAATGCCATGCGCACAGAGGCCATTGCCGTGGCC
ACCAAGGCCGGCGGCAAGAAGATCTTTGGCGGCGGTGGCCAGAACATTAT
CGATCACAATGTTAAGAAGATCCTAGACAAGGGCTTCAGCGAGGAGGAGG
CCCGCAGTGCCTTATCTGCTACCCGAAACAACTTGGAGCGCGCCCTATAC
AATCTAAAAAGACGCAGTGAAGCTGGCGGTGTGGGTCCGATCGAATCCGT
GGGTCGTCCGGGACGCGGAGATCGTCCGCCCAGAGAGGGAAAGCGTGGAG
CTAGCGCCAAGGACGAAGTTGAAGCACCCAAGCCGGCTGCCAACACCACG
CTGTTTGATTTCCTAACCAATAAACTGCCCGCCAAGGAAACACCGGCCGC
TAGTAATGCAGAAACCTTCGCTGCCGCTCCAACTGCCGCTCCGACTGCCC
CACCCACTACCAATCACTTCAATCCATTTAAGCAATATGGAAGCTCGCGC
TTCAGCGATTCCGAGAGCAAACCTTCAGCTATGGGCGGAGGCGGCAAGTT
TGCAGATCGTTCTAGGTTTGAGAACAACGTATCGAGCAGCTTTGCCGCAC
ATCGTGGTGGACATGTGGGTTCGTCGCGAGGCGGTGGCCGTAACCGGGGT
GGCGGCAGGGACGAAAGGCCACCAAGAGAGGAGCGAGCCTACAGGGAAGA
CAGGCCTCCGAGGGAAGAAAAACCGCCGAAAGAGGAGAGACCACCGCGAG
AGCGAGGAGCGTTCAATGATCGTGCAGCTGGACGTTACAAACCAGAAACG
CCAACCGTAAAAACCGCAAATCGCAATGGCTCGGATAACGTATCGTTGAA
ACCGAATTCCGAGATTAAGCCAGATCATGAAACAACCAATGGGAAGGACC
ACACTGGCAACCGACGTGGCAGCGAACGAGGCAGCAATCGTGGAGGCTCC
AATCGAGCAGAGAACGGCAACGCCAATGGCAACAGACGAAACAAGCCGGC
AGCAAGCTTAACTTCGGCGAGTTCTGCAGCGAAATCGACAAATAGTGCTG
GCGATGATTTCAACGCCCGTTTGAGTAAGATAACCGAGGAAACAGCTAAT
CTCAAGGTGAGCAGTGCGCCAAAGCGAGAGAATCGACGTAAGCAAGGAGG
ACAAGCCAATCGCCTGGCGGGATCGGGCACAGAAACAACGCAGCAGCAGC
AGCCAGCACAGTTGCATTCGCAGAAGCCAGAGAAGGCTCAAACCAACCAA
AAGCATCACAATCCCAGGCACAATTCGCAGGCGAACTACAGTCAATTGGC
GAATGGCTACACTTACGATCCCAGCAAGATCATGGGTTTCCAGAGCAAGG
AGGCCAACGAGTTTGCCATGAACCTTCTAAAGAGCCAGGGTGTTACACTG
CCCAACGAAAAACAACAGGAGGAGGAACAGCAGGAATCGCCACCCATGTC
CTTTGGCCCCGTTTCCGCTCCTGTTTCCCGTGCGCAACCTGCTCCAGTGG
CTGTGCCACAGGCTGCGCCACGGGATCAGTTCGGCATGGTGCCAGGCGAT
GCGTGGATGTGGCAGAAGGGCGACTTGTGCATGGCCAAGTATTGGGACGA
TGGAAGGTATTATGAGGCTGAGATCACGGGCGTGTCGGAGAAAACTTGCG
TGGTCTTCTTTATGGGCTATGGAAACCATGAGGAGGTATTGAAGGTCGAC
ATCCTGCCCATCACCGATGCCCAAAACAGGCCACTGAGCAACTCAGCGCA
GCAGCAGCAACCGCATCTGCAGCAACAGCAACCGCATCTACAGCAGCAGC
AACATTCACGCTACCGCGGAGATCGTCAGACGCAGCAGCAGCAAGTCTAC
GTGCCGCCCCACAAACGAGAGCATGCAAGCTTTCTAGACCAT

BO11611.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
Tdrd3-RA 2511 CG13472-PA 1..2508 17..2524 12540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
Tdrd3-RA 2644 CG13472-RA 57..2564 17..2524 12540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14787093..14789213 137..2257 10605 100 Plus
3L 28110227 3L 14789318..14789585 2257..2524 1340 100 Plus
3L 28110227 3L 14786933..14787018 51..136 430 100 Plus
3L 28110227 3L 14786847..14786884 17..54 190 100 Plus
Blast to na_te.dros performed 2014-11-27 08:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6747..6859 2387..2494 226 72.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6830 2387..2495 210 72.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6928 2399..2521 201 65.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6834 2406..2523 195 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2468 2398..2494 195 69 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2416 2399..2493 186 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2766..2857 2399..2496 169 68.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2515 2399..2496 165 64.5 Plus
roo 9092 roo DM_ROO 9092bp 1061..1116 2399..2454 163 76.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2432 1830..1923 150 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6673..6820 2379..2528 132 56 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 643..728 2493..2402 121 64.1 Minus

BO11611.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:38 Download gff for BO11611.complete
Subject Subject Range Query Range Percent Splice Strand
CG13472-RA 55..2562 17..2526 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:00 Download gff for BO11611.complete
Subject Subject Range Query Range Percent Splice Strand
CG13472-RA 57..2564 17..2526 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:08 Download gff for BO11611.complete
Subject Subject Range Query Range Percent Splice Strand
Tdrd3-RA 57..2564 17..2526 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:08 Download gff for BO11611.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14786847..14786881 17..51 100 -> Plus
3L 14786934..14787018 52..136 100 -> Plus
3L 14787093..14789213 137..2257 100 -> Plus
3L 14789319..14789585 2258..2526 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:00 Download gff for BO11611.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14779947..14779981 17..51 100 -> Plus
arm_3L 14780034..14780118 52..136 100 -> Plus
arm_3L 14780193..14782313 137..2257 100 -> Plus
arm_3L 14782419..14782685 2258..2526 99   Plus

BO11611.3prime Sequence

916 bp (787 high quality bases) assembled on 2006-04-19

> BO11611.3prime
ATGGTCTAGAAAGCTTGCATGCTCTCGTTTGTGGGGCGGCACGTAGACTT
GCTGCTGCTGCGTCTGACGATCTCCGCGGTAGCGTGAATGTTGCTGCTGC
TGTAGATGCGGTTGCTGTTGCTGCAGATGCGGTTGCTGCTGCTGCGCTGA
GTTGCTCAGTGGCCTGTTTTGGGCATCGGTGATGGGCAGGATGTCGACCT
TCAATACCTCCTCATGGTTTCCATAGCCCATAAAGAAGACCACGCAAGTT
TTCTCCGACACGCCCGTGATCTCAGCCTCATAATACCTTCCATCGTCCCA
ATACTTGGCCATGCACAAGTCGCCCTTCTGCCACATCCACGCATCGCCTG
GCACCATGCCGAACTGATCCCGTGGCGCAGCCTGTGGCACAGCCACTGGA
GCAGGTTGCGCACGGGAAACAGGAGCGGAAACGGGGCCAAAGGACATGGG
TGGCGATTCCTGCTGTTCCTCCTCCTGTTGTTTTTCGTTGGGCAGTGTAA
CACCCTGGCTCTTTAGAAGGTTCATGGCAAACTCGTTGGCCTCCTTGCTC
TGGAAACCCATGATCTTGCTGGGATCGTAAGTGTAGCCATTCGCCAATTG
ACTGTAGTTCGCCTGCGAATTGTGCCTGGGATTGTGATGCTTTTGGTTGG
TTTGAGCCTTCTCTGGCTTCTGCGAATGCAACTGTGCTGGCTGCTGCTGC
TGCGTTGTTTCTGTGCCCGATCCCGCCAGGCGATTGGCTTGTCCTCCTTG
CTTACGTCGATTCTCTCGCTTTGGCGCACTGCTCACCTTGAGATTAGCTG
TTTCCTCGGTTATCTTACTCAAACGGGCGTTGAAATCATCGCCAGCACTA
TTTGTCGATTTCGCTGCAGAACTCGCCGAAGTTAAGCTTGCTGCCGGCTT
GTTTCGTCTGTTGCCC

BO11611.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13472-PA 2511 CG13472-RA 1612..2508 915..19 4485 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
Tdrd3-RA 2644 CG13472-RA 1668..2564 915..19 4485 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14788584..14789213 915..286 3150 100 Minus
3L 28110227 3L 14789318..14789585 286..19 1340 100 Minus
Blast to na_te.dros performed 2015-02-09 03:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6747..6859 156..49 226 72.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6830 156..48 210 72.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6928 144..22 201 65.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2468 145..49 195 69 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6834 137..20 195 65.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2416 144..50 186 68.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2766..2857 144..47 169 68.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2515 144..47 165 64.5 Minus
roo 9092 roo DM_ROO 9092bp 1061..1116 144..89 163 76.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2432 713..620 150 64.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6673..6820 164..15 132 56 Minus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 643..728 50..141 121 64.1 Plus
TART-A 13424 TART-A 13424bp 102..151 717..667 108 70.6 Minus
TART-A 13424 TART-A 13424bp 11280..11329 717..667 108 70.6 Minus

BO11611.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:24 Download gff for BO11611.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13472-PA 1611..2511 16..916 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:56 Download gff for BO11611.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13472-PA 1611..2511 16..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:58:35 Download gff for BO11611.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13472-RA 1667..2564 19..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:29:14 Download gff for BO11611.3prime
Subject Subject Range Query Range Percent Splice Strand
Tdrd3-RA 1667..2564 19..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:29:14 Download gff for BO11611.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14788583..14789213 286..916 99 -> Minus
3L 14789319..14789585 19..285 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:58:35 Download gff for BO11611.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14781683..14782313 286..916 99 -> Minus
arm_3L 14782419..14782685 19..285 100   Minus

BO11611.5prime Sequence

832 bp (737 high quality bases) assembled on 2006-04-19

> BO11611.5prime
GAAGTTATCAGTCGACATGGAATTAGGCAAGAAACTACGAGAAGTCGGGT
GGTACCTGACAGAGGAGGGCCTTAAAATCGTGACAACAGCCGTCGGCAGC
GAGGATGTCCGGAAAATAGTCAATGATGCACTGAATCGAGATCTGCGCGA
TATTGGCGGTGGCGCACTGCCCGCGAAACGCGAAGATGCCACTTTGCCCG
GTAAAATTGTGCTGCAGGTTCAGCGTGTGCGAAATATTGCCGCTCCCAAG
GCGAATGAGGAATCGAAGGCGGCGCCACGCCTCCTTCAGTTGGATCTGAG
TGATGGGCAGAATTCCATAAAGGCCTTGGAGCTGGAGCCAGTTCCCCAAC
TGAATCTCAATGTGGCTCCCGGAAGCAAGATCTATTTCAAGGCCGAGAAA
CTGCAGCTTATGCAGGGATTCCTGCTGCTAAAGTCCAGTGAAATTCAGCT
GCTCGGCGGCCGTGTGGATGCACTCTACGAGAAATGGGATCTGGCCAGGA
CCATGATGAGATATGCGCGCAGTGGGCGCCCCTTGAATGGGACATCAGCG
CCACCCCCGTGGGTGGCATTTGGCCGAAAAATCGATAGCAACGCCGAAAG
CGAAATGAACTTTAAGAGCCTGGGCGAGGGCGACAAGGACAAGCCGGCAA
AGGAGAACGAAGAGTTCAATGCCATGCGCACAGAGGCCATTGCCGTGGCC
ACCAAGGCCGGCGGCAAGAAGATCTTTGGCGGCGGTGGCCAGAACATTAT
CGATCACAATGTTAAGAAGATCCTAAACAAGGGGCTCAGCGAGGAGGAGG
CCCGCAGTGCCTTATCTGCTACCCGAAACAAC

BO11611.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13472-PA 2511 CG13472-RA 1..816 17..832 4005 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
Tdrd3-RA 2644 CG13472-RA 57..872 17..832 4035 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14787093..14787788 137..832 3435 99.6 Plus
3L 28110227 3L 14786933..14787018 51..136 430 100 Plus
3L 28110227 3L 14786847..14786884 17..54 190 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:28:30 has no hits.

BO11611.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:25 Download gff for BO11611.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13472-PA 1..816 17..832 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:36:58 Download gff for BO11611.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13472-PA 1..816 17..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:31:45 Download gff for BO11611.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13472-RA 57..872 17..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:54 Download gff for BO11611.5prime
Subject Subject Range Query Range Percent Splice Strand
Tdrd3-RA 57..872 17..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:54 Download gff for BO11611.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14786934..14787018 52..136 100 -> Plus
3L 14786847..14786881 17..51 100 -> Plus
3L 14787093..14787788 137..832 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:31:45 Download gff for BO11611.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14779947..14779981 17..51 100 -> Plus
arm_3L 14780034..14780118 52..136 100 -> Plus
arm_3L 14780193..14780888 137..832 99   Plus

BO11611.pep Sequence

Translation from 16 to 2542

> BO11611.pep
MELGKKLREVGWYLTEEGLKIVTTAVGSEDVRKIVNDALNRDLRDIGGGA
LPAKREDATLPGKIVLQVQRVRNIAAPKANEESKAAPRLLQLDLSDGQNS
IKALELEPVPQLNLNVAPGSKIYFKAEKLQLMQGFLLLKSSEIQLLGGRV
DALYEKWDLARTMMRYARSGRPLNGTSAPPPWVAFGRKIDSNAESEMNFK
SLGEGDKDKPAKENEEFNAMRTEAIAVATKAGGKKIFGGGGQNIIDHNVK
KILDKGFSEEEARSALSATRNNLERALYNLKRRSEAGGVGPIESVGRPGR
GDRPPREGKRGASAKDEVEAPKPAANTTLFDFLTNKLPAKETPAASNAET
FAAAPTAAPTAPPTTNHFNPFKQYGSSRFSDSESKPSAMGGGGKFADRSR
FENNVSSSFAAHRGGHVGSSRGGGRNRGGGRDERPPREERAYREDRPPRE
EKPPKEERPPRERGAFNDRAAGRYKPETPTVKTANRNGSDNVSLKPNSEI
KPDHETTNGKDHTGNRRGSERGSNRGGSNRAENGNANGNRRNKPAASLTS
ASSAAKSTNSAGDDFNARLSKITEETANLKVSSAPKRENRRKQGGQANRL
AGSGTETTQQQQPAQLHSQKPEKAQTNQKHHNPRHNSQANYSQLANGYTY
DPSKIMGFQSKEANEFAMNLLKSQGVTLPNEKQQEEEQQESPPMSFGPVS
APVSRAQPAPVAVPQAAPRDQFGMVPGDAWMWQKGDLCMAKYWDDGRYYE
AEITGVSEKTCVVFFMGYGNHEEVLKVDILPITDAQNRPLSNSAQQQQPH
LQQQQPHLQQQQHSRYRGDRQTQQQQVYVPPHKREHASFLDH

BO11611.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
Tdrd3-PA 836 CG13472-PA 1..836 1..836 4363 100 Plus