Clone Sequence Records
BO11614.3prime Sequence
914 bp (805 high quality bases) assembled on 2006-04-19
> BO11614.3prime
ATGGTCTAGAAAGCTTGCGTCCAAGCCGAACTCGTTGCGAATCCAGGGAT
ACTGGGCAGGACACTCCATGCAAGTGTAGAAGAATCGATCCTCTTGCAGC
ACCCGACTACGCACCTTGCACACATTCGGCGTGTTGCAGACCTGCTCGTG
GGGATCCAAGTCCTTCGGTTGGCAGTGCCAGGACTCGAATTGGTGCAGCT
GGTTGCTGGGCGTGGGATGGCGCATCCACTGAATCGCCTGCTGGTTAGTC
ACGAAGAACACATCCGGCAGCTTTTGCAGATCGTCGAGGAATTTCAGAAA
TGCATTCAGATAGTCGACTTTCTTGAACCAAGTCGAATGGAAATACAGGC
CAAATGGTGCCCTATTGCTGAGGTAGTGCCTCTTGAAGTTGTGCGTGAGC
ATTCTGTACACATCCTCGCCGCTCAAATGCGGCGGACACGTGTCCACCAT
GCCGCACATATACTCGCCCACTTCCAGTTGGTTCATAACCAGCTCCCAAA
TGCCCGGATAACTCCTAGACGGGCAATTCTGATTTACGCCCGTGCAGCTG
TGCGGCATCTTGTAGTCCAAGGTGTAGGGCCACAGAGGAGGATTCGAATG
CGGCGCAACCATGGATGAATCGTACACGAAGCCAAACTCCTTCATCATGA
GAAACTGTCGATTCCAGCCGACGCGCAGAAAGGGTACTCTCATGCCACGA
ATCTCCTCCATTCGTACCGCTGCGAACTTATTGATTATATTCGCCTGGCC
AACCATCTCATCGAACCAATCCTCAATTGTGGCATTCTTGGACCACCACA
TCTCTGGGCCACGATGCGTTACTGAGTGCACTGCGATCTCGTGACCATCG
TTTCAAAGCTTCTGCACATACTGATAGTTGGTAAACGGATGTGAAACGTA
GAATGTGCCCTTAA
BO11614.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17905-PA | 1734 | CG17905-RA | 836..1731 | 914..19 | 4455 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:25:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ChLD3-RA | 2265 | CG17905-RA | 982..1877 | 914..19 | 4465 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 11:25:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16741366..16741888 | 817..295 | 2615 | 100 | Minus |
| 2L | 23513712 | 2L | 16741946..16742222 | 295..19 | 1385 | 100 | Minus |
| 2L | 23513712 | 2L | 16741208..16741305 | 914..817 | 475 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-01 11:25:52 has no hits.
BO11614.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:29 Download gff for
BO11614.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17905-PA | 838..1734 | 15..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:04 Download gff for
BO11614.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17905-PA | 838..1734 | 15..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:37:39 Download gff for
BO11614.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ChLD3-RA | 982..1881 | 14..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:12:07 Download gff for
BO11614.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ChLD3-RA | 982..1881 | 14..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:12:07 Download gff for
BO11614.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16741208..16741304 | 818..914 | 98 | -> | Minus |
| 2L | 16741366..16741888 | 295..817 | 100 | -> | Minus |
| 2L | 16741947..16742226 | 14..294 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:37:39 Download gff for
BO11614.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16741208..16741304 | 818..914 | 98 | -> | Minus |
| arm_2L | 16741366..16741888 | 295..817 | 100 | -> | Minus |
| arm_2L | 16741947..16742226 | 14..294 | 99 | | Minus |
BO11614.5prime Sequence
856 bp (825 high quality bases) assembled on 2006-04-19
> BO11614.5prime
GAAGTTATCAGTCGACATGCTCTGCCCGGGGGAAAATGCCTATAATGCAA
ATGGCCAAACGGGTTTCACAGTCAAGGTCGTCGCTTCCGCCCAGCGACGC
TCGAAGCCACAACCAACAGCGCGAATTCCCAACGCCCACCGCTTACCCAG
TTTGTGCATCTGGATGATGGTGGCGCTTATGATTATGTCGTCGTCGCTGG
ACGCCCTGGTCATTGACAATGATGGAATAGTCGGCAACCAAACTCGGCAT
CGTCGCTCGACCTCCGGCGCAGCCAGTTGCATGCAAGATGCACGCTTCTA
CCGCAACCCCAACAGGCCGGTCCACAAGATCTGGACGAACAGCGAGTGCG
CCAAGTATTTCCTCTGCCTCGACGGTGAGGTGTTCGAATTCAAGTGCTCC
GAGGGATTGCTCTTCGATGTGGTGCGTCAGATCTGCGACTTCAAGGCGAA
TGTGGACAATTGCGATGTCAGCGCGGAGACGCCGGCTCCAAAACCACTAC
TGGAGATGGCCGACTGTGCGGATGAATACCAGTTGGGCTGCGCCGATGGT
ACCTGCCTGCCGCAGGAGTACTTCTGCGATGGTTCGGTAGACTGTCCCGA
CGGCTCCGACGAAGGCTGGTGCGATGTGGAGCACGATCCGAATGCGGCTG
GTGCCTGTGATCCGCGAAAGTGCCATTTGCCGCAGTGCTTCTGCTCGAAG
GATGGCACCCAGATACCCGGCAGTCTTCCGGCACAGAGTGTTCCGCAGAT
GATACTGTTGACCTTCGACGATGCCATCAATCACGATAACTGGGAGCTGT
TCTCCAAGGTTTTGTTCACACAGCACAGGCGAAACCCCCAACGGGTGTCC
CATTAA
BO11614.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17905-PA | 1734 | CG17905-RA | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:45:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ChLD3-RA | 2265 | CG17905-RA | 147..985 | 17..856 | 4175 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:45:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16740571..16741211 | 215..856 | 3160 | 99.8 | Plus |
| 2L | 23513712 | 2L | 16738996..16739194 | 17..215 | 995 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:45:17 has no hits.
BO11614.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:30 Download gff for
BO11614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17905-PA | 1..837 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:05 Download gff for
BO11614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17905-PA | 1..837 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:46:07 Download gff for
BO11614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ChLD3-RA | 147..985 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:09:11 Download gff for
BO11614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ChLD3-RA | 147..985 | 17..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:09:11 Download gff for
BO11614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16738996..16739194 | 17..215 | 100 | -> | Plus |
| 2L | 16740572..16741211 | 216..856 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:46:07 Download gff for
BO11614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16738996..16739194 | 17..215 | 100 | -> | Plus |
| arm_2L | 16740572..16741211 | 216..856 | 99 | | Plus |
BO11614.complete Sequence
1765 bp assembled on 2008-01-17
GenBank Submission: FJ632129
> BO11614.complete
GAAGTTATCAGTCGACATGCTCTGCCCGGGGGAAAATGCCTATAATGCAA
ATGGCCAAACGGGTTTCACAGTCAAGGTCGTCGCTTCCGCCCAGCGACGC
TCGAAGCCACAACCAACAGCGCGAATTCCCAACGCCCACCGCTTACCCAG
TTTGTGCATCTGGATGATGGTGGCGCTTATGATTATGTCGTCGTCGCTGG
ACGCCCTGGTCATTGACAATGATGGAATAGTCGGCAACCAAACTCGGCAT
CGTCGCTCGACCTCCGGCGCAGCCAGTTGCATGCAAGATGCACGCTTCTA
CCGCAACCCCAACAGGCCGGTCCACAAGATCTGGACGAACAGCGAGTGCG
CCAAGTATTTCCTCTGCCTCGACGGTGAGGTGTTCGAATTCAAGTGCTCC
GAGGGATTGCTCTTCGATGTGGTGCGTCAGATCTGCGACTTCAAGGCGAA
TGTGGACAATTGCGATGTCAGCGCGGAGACGCCGGCTCCAAAACCACTAC
TGGAGATGGCCGACTGTGCGGATGAATACCAGTTGGGCTGCGCCGATGGT
ACCTGCCTGCCGCAGGAGTACTTCTGCGATGGTTCGGTAGACTGTCCCGA
CGGCTCCGACGAAGGCTGGTGCGATGTGGAGCACGATCCGAATGCGGCTG
GTGCCTGTGATCCGCGAAAGTGCCATTTGCCGCAGTGCTTCTGCTCGAAG
GATGGCACCCAGATACCCGGCAGTCTTCCGGCACAGAGTGTTCCGCAGAT
GATACTGTTGACCTTCGACGATGCCATCAATCACGATAACTGGGAGCTGT
TCTCCAAGGTTTTGTTCACACAGCACAGGCGAAACCCCAACGGGTGTCCC
ATTAAGGGCACATTCTACGTTTCACATCCGTTTACCAACTATCAGTATGT
GCAGAAGCTTTGGAACGATGGTCACGAGATCGCAGTGCACTCAGTAACGC
ATCGTGGCCCAGAGATGTGGTGGTCCAAGAATGCCACAATTGAGGATTGG
TTCGATGAGATGGTTGGCCAGGCGAATATAATCAATAAGTTCGCAGCGGT
ACGAATGGAGGAGATTCGTGGCATGAGAGTACCCTTTCTGCGCGTCGGCT
GGAATCGACAGTTTCTCATGATGAAGGAGTTTGGCTTCGTGTACGATTCA
TCCATGGTTGCGCCGCATTCGAATCCTCCTCTGTGGCCCTACACCTTGGA
CTACAAGATGCCGCACAGCTGCACGGGCGTAAATCAGAATTGCCCGTCTA
GGAGTTATCCGGGCATTTGGGAGCTGGTTATGAACCAACTGGAAGTGGGC
GAGTATATGTGCGGCATGGTGGACACGTGTCCGCCGCATTTGAGCGGCGA
GGATGTGTACAGAATGCTCACGCACAACTTCAAGAGGCACTACCTCAGCA
ATAGGGCACCATTTGGCCTGTATTTCCATTCGACTTGGTTCAAGAAAGTC
GACTATCTGAATGCATTTCTGAAATTCCTCGACGATCTGCAAAAGCTGCC
GGATGTGTTCTTCGTGACTAACCAGCAGGCGATTCAGTGGATGCGCCATC
CCACGCCCAGCAACCAGCTGCACCAATTCGAGTCCTGGCACTGCCAACCG
AAGGACTTGGATCCCCACGAGCAGGTCTGCAACACGCCGAATGTGTGCAA
GGTGCGTAGTCGGGTGCTGCAAGAGGATCGATTCTTCTACACTTGCATGG
AGTGTCCTGCCCAGTATCCCTGGATTCGCAACGAGTTCGGCTTGGACGCA
AGCTTTCTAGACCAT
BO11614.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ChLD3-RA | 1734 | CG17905-PA | 1..1731 | 17..1747 | 8655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ChLD3-RA | 2265 | CG17905-RA | 147..1877 | 17..1747 | 8655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16740571..16741305 | 215..949 | 3675 | 100 | Plus |
| 2L | 23513712 | 2L | 16741366..16741888 | 949..1471 | 2615 | 100 | Plus |
| 2L | 23513712 | 2L | 16741946..16742222 | 1471..1747 | 1385 | 100 | Plus |
| 2L | 23513712 | 2L | 16738996..16739194 | 17..215 | 995 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:38:04 has no hits.
BO11614.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:45 Download gff for
BO11614.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ChLD3-RA | 1..1734 | 17..1751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:18 Download gff for
BO11614.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ChLD3-RA | 145..1875 | 17..1749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:57 Download gff for
BO11614.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ChLD3-RA | 147..1877 | 17..1749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:45 Download gff for
BO11614.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ChLD3-RA | 145..1879 | 17..1752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:35 Download gff for
BO11614.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ChLD3-RA | 147..1877 | 17..1749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:35 Download gff for
BO11614.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16738996..16739194 | 17..215 | 100 | -> | Plus |
| 2L | 16740572..16741304 | 216..948 | 100 | -> | Plus |
| 2L | 16741366..16741888 | 949..1471 | 100 | -> | Plus |
| 2L | 16741947..16742222 | 1472..1749 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:57 Download gff for
BO11614.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16738996..16739194 | 17..215 | 100 | -> | Plus |
| arm_2L | 16740572..16741304 | 216..948 | 100 | -> | Plus |
| arm_2L | 16741366..16741888 | 949..1471 | 100 | -> | Plus |
| arm_2L | 16741947..16742222 | 1472..1749 | 99 | | Plus |
BO11614.pep Sequence
Translation from 16 to 1765
> BO11614.pep
MLCPGENAYNANGQTGFTVKVVASAQRRSKPQPTARIPNAHRLPSLCIWM
MVALMIMSSSLDALVIDNDGIVGNQTRHRRSTSGAASCMQDARFYRNPNR
PVHKIWTNSECAKYFLCLDGEVFEFKCSEGLLFDVVRQICDFKANVDNCD
VSAETPAPKPLLEMADCADEYQLGCADGTCLPQEYFCDGSVDCPDGSDEG
WCDVEHDPNAAGACDPRKCHLPQCFCSKDGTQIPGSLPAQSVPQMILLTF
DDAINHDNWELFSKVLFTQHRRNPNGCPIKGTFYVSHPFTNYQYVQKLWN
DGHEIAVHSVTHRGPEMWWSKNATIEDWFDEMVGQANIINKFAAVRMEEI
RGMRVPFLRVGWNRQFLMMKEFGFVYDSSMVAPHSNPPLWPYTLDYKMPH
SCTGVNQNCPSRSYPGIWELVMNQLEVGEYMCGMVDTCPPHLSGEDVYRM
LTHNFKRHYLSNRAPFGLYFHSTWFKKVDYLNAFLKFLDDLQKLPDVFFV
TNQQAIQWMRHPTPSNQLHQFESWHCQPKDLDPHEQVCNTPNVCKVRSRV
LQEDRFFYTCMECPAQYPWIRNEFGLDASFLDH
BO11614.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ChLD3-PA | 577 | CG17905-PA | 1..577 | 1..577 | 3242 | 100 | Plus |
| verm-PG | 525 | CG8756-PG | 43..520 | 104..575 | 1167 | 46.2 | Plus |
| serp-PC | 541 | CG32209-PC | 67..537 | 111..575 | 1167 | 47.1 | Plus |
| serp-PB | 541 | CG32209-PB | 67..537 | 111..575 | 1167 | 47.1 | Plus |
| verm-PH | 531 | CG8756-PH | 43..526 | 104..575 | 1154 | 46 | Plus |
