Clone Sequence Records
BO11616.3prime Sequence
803 bp (802 high quality bases) assembled on 2006-04-19
> BO11616.3prime
ATGGTCTAGAAAGCTTGCTCTGGGGCACATGGCATGGCGACCGCCGTCCA
CGGGCAGGCTGATACCGGTGCTGAAGCTGGCCTCGTCGCTGGCCAGGAAT
GCAATGGCCGCAGCCACCTCCTTGACTTCGCCGGGTCGACCCAGGGCATG
GGTGACCTTGGCGTGCTCGAGGAACTTGACGTAGGCTTCCTGGTCCAGTC
CACCACGACGCTGCAGCTCGGTGATGATTACGCCGGGATTCACGGAGTTC
ACACGCACACCCTTGGGAGCTAGCTCCAGAGCCACGCACCTGGTGAACTG
ATCCACGGCAGCCTTGGAAACATTGTATGCTAAGACTCCGGGAAAGGAAC
GGATGCCGTTCACACTAGACACGTTTACAATGTTGCCCTTGGTCTTGATT
AGCTCCGGTGTGACCAGGTGGGTCAGCTGGTAGAGCGACCGGACGTTGGT
GTTCATAACGCGGTCAAACTGCTCCAGACTGGTGTTCTCGATGCTGCCTA
GCTCCAAGATTCCGGCGTTGTTCACCAGCACGTCGATGCGACCGTGCTTG
GCCAATGTGGCGGAGACGATGCCCTGGACGTCGGACTCGCTGTTTATGTC
CGCCGCCACCTGGAGTGCTGGCGCTCCTCCAGCTGCCACTATCTGCTCCG
CGGTCTCGTTGAGCTTATCCAAATTCCTGCCCACGATGGTGAGCAGGCCT
CCCAGTTTAGCCAAGAGCACCGAAGTACCCGCTCCAATTCCCGAACTGGC
TCCGGTCACGATTATAACTTTATCCTTGAAACTGGGCATGTCGACTGATA
ACT
BO11616.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12171-PA | 774 | CG12171-RA | 1..771 | 789..19 | 3855 | 100 | Minus |
CG31548-PA | 771 | CG31548-RA | 661..764 | 126..23 | 370 | 94.2 | Minus |
CG31549-PA | 774 | CG31549-RA | 658..767 | 132..23 | 200 | 87.2 | Minus |
CG31548-PA | 771 | CG31548-RA | 509..557 | 278..230 | 145 | 91.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12171-RA | 1014 | CG12171-RA | 64..836 | 791..19 | 3865 | 100 | Minus |
CG31548-RA | 952 | CG31548-RA | 303..811 | 531..23 | 985 | 79.8 | Minus |
CG31549-RB | 991 | CG31549-RB | 75..832 | 780..23 | 970 | 75.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5633690..5634462 | 791..19 | 3865 | 100 | Minus |
3R | 32079331 | 3R | 5636042..5636550 | 23..531 | 985 | 79.6 | Plus |
3R | 32079331 | 3R | 5632405..5633162 | 780..23 | 970 | 75.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:56:40 has no hits.
BO11616.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:33 Download gff for
BO11616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-PA | 1..774 | 15..789 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:09 Download gff for
BO11616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-PA | 1..774 | 15..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:54:38 Download gff for
BO11616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-RA | 50..840 | 14..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:08 Download gff for
BO11616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-RA | 50..840 | 14..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:08 Download gff for
BO11616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5633676..5634466 | 14..803 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:54:38 Download gff for
BO11616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1459398..1460188 | 14..803 | 99 | | Minus |
BO11616.5prime Sequence
803 bp (802 high quality bases) assembled on 2006-04-19
> BO11616.5prime
GAAGTTATCAGTCGACATGCCCAGTTTCAAGGATAAAGTTATAATCGTGA
CCGGAGCCAGTTCGGGAATTGGAGCGGGTACTTCGGTGCTCTTGGCTAAA
CTGGGAGGCCTGCTCACCATCGTGGGCAGGAATTTGGATAAGCTCAACGA
GACCGCGGAGCAGATAGTGGCAGCTGGAGGAGCGCCAGCACTCCAGGTGG
CGGCGGACATAAACAGCGAGTCCGACGTCCAGGGCATCGTCTCCGCCACA
TTGGCCAAGCACGGTCGCATCGACGTGCTGGTGAACAACGCCGGAATCTT
GGAGCTAGGCAGCATCGAGAACACCAGTCTGGAGCAGTTTGACCGCGTTA
TGAACACCAACGTCCGGTCGCTCTACCAGCTGACCCACCTGGTCACACCG
GAGCTAATCAAGACCAAGGGCAACATTGTAAACGTGTCTAGTGTGAACGG
CATCCGTTCCTTTCCCGGAGTCTTAGCATACAATGTTTCCAAGGCTGCCG
TGGATCAGTTCACCAGGTGCGTGGCTCTGGAGCTAGCTCCCAAGGGTGTG
CGTGTGAACTCCGTGAATCCCGGCGTAATCATCACCGAGCTGCAGCGTCG
TGGTGGACTGGACCAGGAAGCCTACGTCAAGTTCCTCGAGCACGCCAAGG
TCACCCATGCCCTGGGTCGACCCGGCGAAGTCAAGGAGGTGGCTGCGGCC
ATTGCATTCCTGGCCAGCGACGAGGCCAGCTTCAGCACCGGTATCAGCCT
GCCCGTGGACGGCGGTCGCCATGCCATGTGCCCCAGAGCAAGCTTTCTAG
ACC
BO11616.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12171-PA | 774 | CG12171-RA | 1..771 | 17..787 | 3855 | 100 | Plus |
CG31548-PA | 771 | CG31548-RA | 661..764 | 680..783 | 370 | 94.2 | Plus |
CG31549-PA | 774 | CG31549-RA | 658..767 | 674..783 | 200 | 87.2 | Plus |
CG31548-PA | 771 | CG31548-RA | 509..557 | 528..576 | 145 | 91.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:43:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12171-RA | 1014 | CG12171-RA | 64..836 | 15..787 | 3865 | 100 | Plus |
CG31548-RA | 952 | CG31548-RA | 303..811 | 275..783 | 985 | 79.8 | Plus |
CG31549-RB | 991 | CG31549-RB | 75..832 | 26..783 | 970 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:43:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5633690..5634462 | 15..787 | 3865 | 100 | Plus |
3R | 32079331 | 3R | 5636042..5636550 | 783..275 | 985 | 79.6 | Minus |
3R | 32079331 | 3R | 5632405..5633162 | 26..783 | 970 | 75.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:43:39 has no hits.
BO11616.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:34 Download gff for
BO11616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-PA | 1..774 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:10 Download gff for
BO11616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-PA | 1..774 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:13:02 Download gff for
BO11616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-RA | 50..840 | 3..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:23 Download gff for
BO11616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-RA | 50..840 | 3..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:23 Download gff for
BO11616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5633676..5634466 | 3..792 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:13:02 Download gff for
BO11616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1459398..1460188 | 3..792 | 99 | | Plus |
BO11616.complete Sequence
805 bp assembled on 2006-10-11
GenBank Submission: FJ632130
> BO11616.complete
GAAGTTATCAGTCGACATGCCCAGTTTCAAGGATAAAGTTATAATCGTGA
CCGGAGCCAGTTCGGGAATTGGAGCGGGTACTTCGGTGCTCTTGGCTAAA
CTGGGAGGCCTGCTCACCATCGTGGGCAGGAATTTGGATAAGCTCAACGA
GACCGCGGAGCAGATAGTGGCAGCTGGAGGAGCGCCAGCACTCCAGGTGG
CGGCGGACATAAACAGCGAGTCCGACGTCCAGGGCATCGTCTCCGCCACA
TTGGCCAAGCACGGTCGCATCGACGTGCTGGTGAACAACGCCGGAATCTT
GGAGCTAGGCAGCATCGAGAACACCAGTCTGGAGCAGTTTGACCGCGTTA
TGAACACCAACGTCCGGTCGCTCTACCAGCTGACCCACCTGGTCACACCG
GAGCTAATCAAGACCAAGGGCAACATTGTAAACGTGTCTAGTGTGAACGG
CATCCGTTCCTTTCCCGGAGTCTTAGCATACAATGTTTCCAAGGCTGCCG
TGGATCAGTTCACCAGGTGCGTGGCTCTGGAGCTAGCTCCCAAGGGTGTG
CGTGTGAACTCCGTGAATCCCGGCGTAATCATCACCGAGCTGCAGCGTCG
TGGTGGACTGGACCAGGAAGCCTACGTCAAGTTCCTCGAGCACGCCAAGG
TCACCCATGCCCTGGGTCGACCCGGCGAAGTCAAGGAGGTGGCTGCGGCC
ATTGCATTCCTGGCCAGCGACGAGGCCAGCTTCAGCACCGGTATCAGCCT
GCCCGTGGACGGCGGTCGCCATGCCATGTGCCCCAGAGCAAGCTTTCTAG
ACCAT
BO11616.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:32:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12171-RA | 774 | CG12171-PA | 1..771 | 17..787 | 3855 | 100 | Plus |
CG31548-RA | 771 | CG31548-PA | 256..764 | 275..783 | 985 | 79.6 | Plus |
CG31549-RB | 774 | CG31549-PB | 10..767 | 26..783 | 970 | 75.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12171-RA | 1014 | CG12171-RA | 64..836 | 15..787 | 3865 | 100 | Plus |
CG31548-RA | 952 | CG31548-RA | 303..811 | 275..783 | 985 | 79.6 | Plus |
CG31549-RB | 991 | CG31549-RB | 75..832 | 26..783 | 970 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:32:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5633690..5634462 | 15..787 | 3865 | 100 | Plus |
3R | 32079331 | 3R | 5636042..5636550 | 783..275 | 985 | 79.6 | Minus |
3R | 32079331 | 3R | 5632405..5633162 | 26..783 | 970 | 75.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:32:45 has no hits.
BO11616.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:21 Download gff for
BO11616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-RA | 1..774 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:42 Download gff for
BO11616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-RA | 53..843 | 3..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:52 Download gff for
BO11616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-RA | 66..836 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:21 Download gff for
BO11616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-RA | 53..843 | 3..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:43 Download gff for
BO11616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12171-RA | 66..836 | 17..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:43 Download gff for
BO11616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5633692..5634462 | 17..789 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:52 Download gff for
BO11616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1459414..1460184 | 17..789 | 99 | | Plus |
BO11616.pep Sequence
Translation from 16 to 805
> BO11616.pep
MPSFKDKVIIVTGASSGIGAGTSVLLAKLGGLLTIVGRNLDKLNETAEQI
VAAGGAPALQVAADINSESDVQGIVSATLAKHGRIDVLVNNAGILELGSI
ENTSLEQFDRVMNTNVRSLYQLTHLVTPELIKTKGNIVNVSSVNGIRSFP
GVLAYNVSKAAVDQFTRCVALELAPKGVRVNSVNPGVIITELQRRGGLDQ
EAYVKFLEHAKVTHALGRPGEVKEVAAAIAFLASDEASFSTGISLPVDGG
RHAMCPRASFLDH
BO11616.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12171-PA | 257 | CG12171-PA | 1..257 | 1..257 | 1269 | 100 | Plus |
CG31549-PB | 257 | CG31549-PB | 1..257 | 1..257 | 1058 | 80.9 | Plus |
CG31549-PA | 257 | CG31549-PA | 1..257 | 1..257 | 1058 | 80.9 | Plus |
CG31548-PA | 256 | CG31548-PA | 2..256 | 3..257 | 901 | 68.6 | Plus |
CG31546-PA | 264 | CG31546-PA | 11..264 | 4..257 | 672 | 52.9 | Plus |