Clone BO11616 Report

Search the DGRC for BO11616

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG12171-RA
Protein status:BO11616.pep: validated full length
Sequenced Size:805

Clone Sequence Records

BO11616.3prime Sequence

803 bp (802 high quality bases) assembled on 2006-04-19

> BO11616.3prime
ATGGTCTAGAAAGCTTGCTCTGGGGCACATGGCATGGCGACCGCCGTCCA
CGGGCAGGCTGATACCGGTGCTGAAGCTGGCCTCGTCGCTGGCCAGGAAT
GCAATGGCCGCAGCCACCTCCTTGACTTCGCCGGGTCGACCCAGGGCATG
GGTGACCTTGGCGTGCTCGAGGAACTTGACGTAGGCTTCCTGGTCCAGTC
CACCACGACGCTGCAGCTCGGTGATGATTACGCCGGGATTCACGGAGTTC
ACACGCACACCCTTGGGAGCTAGCTCCAGAGCCACGCACCTGGTGAACTG
ATCCACGGCAGCCTTGGAAACATTGTATGCTAAGACTCCGGGAAAGGAAC
GGATGCCGTTCACACTAGACACGTTTACAATGTTGCCCTTGGTCTTGATT
AGCTCCGGTGTGACCAGGTGGGTCAGCTGGTAGAGCGACCGGACGTTGGT
GTTCATAACGCGGTCAAACTGCTCCAGACTGGTGTTCTCGATGCTGCCTA
GCTCCAAGATTCCGGCGTTGTTCACCAGCACGTCGATGCGACCGTGCTTG
GCCAATGTGGCGGAGACGATGCCCTGGACGTCGGACTCGCTGTTTATGTC
CGCCGCCACCTGGAGTGCTGGCGCTCCTCCAGCTGCCACTATCTGCTCCG
CGGTCTCGTTGAGCTTATCCAAATTCCTGCCCACGATGGTGAGCAGGCCT
CCCAGTTTAGCCAAGAGCACCGAAGTACCCGCTCCAATTCCCGAACTGGC
TCCGGTCACGATTATAACTTTATCCTTGAAACTGGGCATGTCGACTGATA
ACT

BO11616.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12171-PA 774 CG12171-RA 1..771 789..19 3855 100 Minus
CG31548-PA 771 CG31548-RA 661..764 126..23 370 94.2 Minus
CG31549-PA 774 CG31549-RA 658..767 132..23 200 87.2 Minus
CG31548-PA 771 CG31548-RA 509..557 278..230 145 91.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12171-RA 1014 CG12171-RA 64..836 791..19 3865 100 Minus
CG31548-RA 952 CG31548-RA 303..811 531..23 985 79.8 Minus
CG31549-RB 991 CG31549-RB 75..832 780..23 970 75.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5633690..5634462 791..19 3865 100 Minus
3R 32079331 3R 5636042..5636550 23..531 985 79.6 Plus
3R 32079331 3R 5632405..5633162 780..23 970 75.2 Minus
Blast to na_te.dros performed on 2015-02-10 18:56:40 has no hits.

BO11616.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:33 Download gff for BO11616.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12171-PA 1..774 15..789 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:09 Download gff for BO11616.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12171-PA 1..774 15..789 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:54:38 Download gff for BO11616.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 50..840 14..803 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:08 Download gff for BO11616.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 50..840 14..803 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:08 Download gff for BO11616.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5633676..5634466 14..803 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:54:38 Download gff for BO11616.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1459398..1460188 14..803 99   Minus

BO11616.5prime Sequence

803 bp (802 high quality bases) assembled on 2006-04-19

> BO11616.5prime
GAAGTTATCAGTCGACATGCCCAGTTTCAAGGATAAAGTTATAATCGTGA
CCGGAGCCAGTTCGGGAATTGGAGCGGGTACTTCGGTGCTCTTGGCTAAA
CTGGGAGGCCTGCTCACCATCGTGGGCAGGAATTTGGATAAGCTCAACGA
GACCGCGGAGCAGATAGTGGCAGCTGGAGGAGCGCCAGCACTCCAGGTGG
CGGCGGACATAAACAGCGAGTCCGACGTCCAGGGCATCGTCTCCGCCACA
TTGGCCAAGCACGGTCGCATCGACGTGCTGGTGAACAACGCCGGAATCTT
GGAGCTAGGCAGCATCGAGAACACCAGTCTGGAGCAGTTTGACCGCGTTA
TGAACACCAACGTCCGGTCGCTCTACCAGCTGACCCACCTGGTCACACCG
GAGCTAATCAAGACCAAGGGCAACATTGTAAACGTGTCTAGTGTGAACGG
CATCCGTTCCTTTCCCGGAGTCTTAGCATACAATGTTTCCAAGGCTGCCG
TGGATCAGTTCACCAGGTGCGTGGCTCTGGAGCTAGCTCCCAAGGGTGTG
CGTGTGAACTCCGTGAATCCCGGCGTAATCATCACCGAGCTGCAGCGTCG
TGGTGGACTGGACCAGGAAGCCTACGTCAAGTTCCTCGAGCACGCCAAGG
TCACCCATGCCCTGGGTCGACCCGGCGAAGTCAAGGAGGTGGCTGCGGCC
ATTGCATTCCTGGCCAGCGACGAGGCCAGCTTCAGCACCGGTATCAGCCT
GCCCGTGGACGGCGGTCGCCATGCCATGTGCCCCAGAGCAAGCTTTCTAG
ACC

BO11616.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12171-PA 774 CG12171-RA 1..771 17..787 3855 100 Plus
CG31548-PA 771 CG31548-RA 661..764 680..783 370 94.2 Plus
CG31549-PA 774 CG31549-RA 658..767 674..783 200 87.2 Plus
CG31548-PA 771 CG31548-RA 509..557 528..576 145 91.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12171-RA 1014 CG12171-RA 64..836 15..787 3865 100 Plus
CG31548-RA 952 CG31548-RA 303..811 275..783 985 79.8 Plus
CG31549-RB 991 CG31549-RB 75..832 26..783 970 75.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5633690..5634462 15..787 3865 100 Plus
3R 32079331 3R 5636042..5636550 783..275 985 79.6 Minus
3R 32079331 3R 5632405..5633162 26..783 970 75.2 Plus
Blast to na_te.dros performed on 2015-02-13 01:43:39 has no hits.

BO11616.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:34 Download gff for BO11616.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12171-PA 1..774 17..791 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:10 Download gff for BO11616.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12171-PA 1..774 17..791 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:13:02 Download gff for BO11616.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 50..840 3..792 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:23 Download gff for BO11616.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 50..840 3..792 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:23 Download gff for BO11616.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5633676..5634466 3..792 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:13:02 Download gff for BO11616.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1459398..1460188 3..792 99   Plus

BO11616.complete Sequence

805 bp assembled on 2006-10-11

GenBank Submission: FJ632130

> BO11616.complete
GAAGTTATCAGTCGACATGCCCAGTTTCAAGGATAAAGTTATAATCGTGA
CCGGAGCCAGTTCGGGAATTGGAGCGGGTACTTCGGTGCTCTTGGCTAAA
CTGGGAGGCCTGCTCACCATCGTGGGCAGGAATTTGGATAAGCTCAACGA
GACCGCGGAGCAGATAGTGGCAGCTGGAGGAGCGCCAGCACTCCAGGTGG
CGGCGGACATAAACAGCGAGTCCGACGTCCAGGGCATCGTCTCCGCCACA
TTGGCCAAGCACGGTCGCATCGACGTGCTGGTGAACAACGCCGGAATCTT
GGAGCTAGGCAGCATCGAGAACACCAGTCTGGAGCAGTTTGACCGCGTTA
TGAACACCAACGTCCGGTCGCTCTACCAGCTGACCCACCTGGTCACACCG
GAGCTAATCAAGACCAAGGGCAACATTGTAAACGTGTCTAGTGTGAACGG
CATCCGTTCCTTTCCCGGAGTCTTAGCATACAATGTTTCCAAGGCTGCCG
TGGATCAGTTCACCAGGTGCGTGGCTCTGGAGCTAGCTCCCAAGGGTGTG
CGTGTGAACTCCGTGAATCCCGGCGTAATCATCACCGAGCTGCAGCGTCG
TGGTGGACTGGACCAGGAAGCCTACGTCAAGTTCCTCGAGCACGCCAAGG
TCACCCATGCCCTGGGTCGACCCGGCGAAGTCAAGGAGGTGGCTGCGGCC
ATTGCATTCCTGGCCAGCGACGAGGCCAGCTTCAGCACCGGTATCAGCCT
GCCCGTGGACGGCGGTCGCCATGCCATGTGCCCCAGAGCAAGCTTTCTAG
ACCAT

BO11616.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12171-RA 774 CG12171-PA 1..771 17..787 3855 100 Plus
CG31548-RA 771 CG31548-PA 256..764 275..783 985 79.6 Plus
CG31549-RB 774 CG31549-PB 10..767 26..783 970 75.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG12171-RA 1014 CG12171-RA 64..836 15..787 3865 100 Plus
CG31548-RA 952 CG31548-RA 303..811 275..783 985 79.6 Plus
CG31549-RB 991 CG31549-RB 75..832 26..783 970 75.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5633690..5634462 15..787 3865 100 Plus
3R 32079331 3R 5636042..5636550 783..275 985 79.6 Minus
3R 32079331 3R 5632405..5633162 26..783 970 75.2 Plus
Blast to na_te.dros performed on 2014-11-27 10:32:45 has no hits.

BO11616.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:21 Download gff for BO11616.complete
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 1..774 17..791 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:42 Download gff for BO11616.complete
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 53..843 3..792 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:52 Download gff for BO11616.complete
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 66..836 17..789 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:21 Download gff for BO11616.complete
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 53..843 3..792 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:43 Download gff for BO11616.complete
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 66..836 17..789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:43 Download gff for BO11616.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5633692..5634462 17..789 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:52 Download gff for BO11616.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1459414..1460184 17..789 99   Plus

BO11616.pep Sequence

Translation from 16 to 805

> BO11616.pep
MPSFKDKVIIVTGASSGIGAGTSVLLAKLGGLLTIVGRNLDKLNETAEQI
VAAGGAPALQVAADINSESDVQGIVSATLAKHGRIDVLVNNAGILELGSI
ENTSLEQFDRVMNTNVRSLYQLTHLVTPELIKTKGNIVNVSSVNGIRSFP
GVLAYNVSKAAVDQFTRCVALELAPKGVRVNSVNPGVIITELQRRGGLDQ
EAYVKFLEHAKVTHALGRPGEVKEVAAAIAFLASDEASFSTGISLPVDGG
RHAMCPRASFLDH

BO11616.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12171-PA 257 CG12171-PA 1..257 1..257 1269 100 Plus
CG31549-PB 257 CG31549-PB 1..257 1..257 1058 80.9 Plus
CG31549-PA 257 CG31549-PA 1..257 1..257 1058 80.9 Plus
CG31548-PA 256 CG31548-PA 2..256 3..257 901 68.6 Plus
CG31546-PA 264 CG31546-PA 11..264 4..257 672 52.9 Plus