Clone BO11617 Report

Search the DGRC for BO11617

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptHs3st-B-RA
Protein status:BO11617.pep: Imported from assembly
Sequenced Size:1186

Clone Sequence Records

BO11617.3prime Sequence

873 bp (835 high quality bases) assembled on 2006-04-19

> BO11617.3prime
ATGGTCTAGAAAGCATGCTGGCCAGGCGAAGTTGATGCCCGTCAGCTGGT
AGAACTTGTTGTTGAAGGGCCGGTAGAACTCCCGGAGGCGCTCGATGGCC
CCGGGATCTATGTGCGGATGGTTGCGCCCCTTGGTCTTACCCAGACAGTG
GGGCGTGGAGCGTGCCTCCGACTTGAAGAGGCAGGGGAAGCCCTTGGTGG
CATTGAAGTAGAAGTGCTTCTCGGTGACCACGCGCTTCAGACCGAGGAAG
TCCTGTACGCGTCCAATCTCGTAGGCGGGATCCATGATCAGCCGCTCGCC
GCTGATGAAGAGCAGCTGCGAGAGCGGAAAGTAGAGCAGCCAGCGCTCCA
GATAGCGTGCATAGACGCCGATCTTCACCGGGCCCCAGTTGGTGTCCACC
ACCGAGTAGCTACCGTTGACGAAGGCCAGCTGCTCGAAGAGCTTCATGTC
CGCCTTCTTGCTCGCCGCCTGTGTGTAGTCGGAGATGGCCCGCGTCACCG
GATCCCGCACCACAATCAGTAATTTTGTTGCCGGATTCATGTGGTAGACG
CGCTGCGGCACCTCCTTGGTGACGAAGTAGCTGGGCGTCTTCTCCATGGT
GATCTGGCCCTCGATAGTGTACGGCATGTGGTGGCGGTACCAGCGTAGTC
CCCGCTGGTAGTGCCTGTCGAAGAAGTGCACCTCCGAACCGGCGGCCCGC
ACGTCCGGATGCAGGCGGATGAACTCGAGCAGCGCCCGCGTCCCGCTCTT
CTTCACGCCAATGATGAGCGTGTCGGGCAGGTGGCGCGATGGTCGGAGCC
CCTGCTGACGGAGCAGCTGATACTTGGGCGCCCCATCCAGGCTGCTAGTA
ACCGTCTGTGCCGGCGGAGCACC

BO11617.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7890-PA 1155 CG7890-RA 298..1152 873..19 4275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-B-RB 2265 CG7890-RB 800..1654 873..19 4275 100 Minus
Hs3st-B-RA 2092 CG7890-RA 451..1305 873..19 4275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19250754..19251258 523..19 2525 100 Minus
X 23542271 X 19249853..19250202 873..524 1750 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:31:54 has no hits.

BO11617.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:35 Download gff for BO11617.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7890-PA 298..1155 18..873 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:11 Download gff for BO11617.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7890-PA 298..1155 18..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:48 Download gff for BO11617.3prime
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 451..1305 19..873 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:43 Download gff for BO11617.3prime
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 451..1305 19..873 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:43 Download gff for BO11617.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19249853..19250202 524..873 100 -> Minus
X 19250754..19251258 19..523 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:48 Download gff for BO11617.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19143886..19144235 524..873 100 -> Minus
arm_X 19144787..19145291 19..523 100   Minus

BO11617.5prime Sequence

907 bp (788 high quality bases) assembled on 2006-04-19

> BO11617.5prime
GAAGTTATCAGTCGACATGCGAGACACGGCAGCCACTAGCGCCCAGCCAG
CCATGATTGTGATGAGCATCTGGTGCAGCAGCCTCAGCCTGAGCAGCCGC
AGCCTGGCCATCGCCCTGGTGATCTGCGTGACTCTGGTCTACTTCTCCTA
CAGCTTCAATGCCTGCCTCCTGGCCAGCATCAGTCGCAGTCTGCAGCAGA
GCAACTTACGCAATCTACTGGCGCTGACCTCCTCGCCCCGCAACGAGACC
AATAACGCCGCCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGGAACAG
CTCATCCACCACCGGTGCTCCGCCGGCACAGACGGTTACTAGCAGCCTGG
ATGGGGCGCCCAAGTATCAGCTGCTCCGTCAGCAGGGGCTCCGACCATCG
CGCCACCTGCCCGACACGCTCATCATTGGCGTGAAGAAGAGCGGGACGCG
GGCGCTGCTCGAGTTCATCCGCCTGCATCCGGACGTGCGGGCCGCCGGTT
CGGAGGTGCACTTCTTCGACAGGCACTACCAGCGGGGACTACGCTGGTAC
CGCCACCACATGCCGTACACTATCGAGGGCCAGATCACCATGGAGAAGAC
GCCCAGCTACTTCGTCACCAAGGAGGTGCCGCAGCGCGTCTACCACATGA
ATCCGGCAACAAAATTACTGATTGTGGTGCGGGATCCGGTGACGCGGGCC
ATCTCCGACTACACACAGGCGGCGAGCAAGAAGGCGGACATGAAGCTCTT
CGAGCAGCTGGCCTTCGTCAACGGTAGCTACTCGGTGGTGGACACCAACT
GGGGCCGGGTGAAGATCGGCGTCTATGCACGCTATCTGGAGCGCTGGCTG
CTCTACTTTCCGCTCTCGCAACTGCTCTTCATCAGCGGCGAGCGGCTGAT
CATGGAT

BO11617.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7890-PA 1155 CG7890-RA 1..891 17..907 4405 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 06:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-B-RB 2265 CG7890-RB 503..1393 17..907 4425 99.8 Plus
Hs3st-B-RA 2092 CG7890-RA 154..1044 17..907 4425 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 06:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19249735..19250202 196..663 2340 100 Plus
X 23542271 X 19250754..19250997 664..907 1190 99.2 Plus
X 23542271 X 19249141..19249323 17..199 915 100 Plus
Blast to na_te.dros performed on 2015-02-10 06:59:20 has no hits.

BO11617.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:36 Download gff for BO11617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7890-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:13 Download gff for BO11617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7890-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:06:30 Download gff for BO11617.5prime
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 154..1044 17..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:42:50 Download gff for BO11617.5prime
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 154..1044 17..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:42:50 Download gff for BO11617.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19249141..19249323 17..199 100 -> Plus
X 19249739..19250202 200..663 100 -> Plus
X 19250754..19250997 664..907 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:06:30 Download gff for BO11617.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19143174..19143356 17..199 100 -> Plus
arm_X 19143772..19144235 200..663 100 -> Plus
arm_X 19144787..19145030 664..907 99   Plus

BO11617.complete Sequence

1186 bp assembled on 2008-08-15

> BO11617.complete
GAAGTTATCAGTCGACATGCGAGACACGGCAGCCACTAGCGCCCAGCCAG
CCATGATTGTGATGAGCATCTGGTGCAGCAGCCTCAGCCTGAGCAGCCGC
AGCCTGGCCATCGCCCTGGTGATCTGCGTGACTCTGGTCTACTTCTCCTA
CAGCTTCAATGCCTGCCTCCTGGCCAGCATCAGTCGCAGTCTGCAGCAGA
GCAACTTACGCAATCTACTGGCGCTGACCTCCTCGCCCCGCAACGAGACC
AATAACGCCGCCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGGAACAG
CTCATCCACCACCGGTGCTCCGCCGGCACAGACGGTTACTAGCAGCCTGG
ATGGGGCGCCCAAGTATCAGCTGCTCCGTCAGCAGGGGCTCCGACCATCG
CGCCACCTGCCCGACACGCTCATCATTGGCGTGAAGAAGAGCGGGACGCG
GGCGCTGCTCGAGTTCATCCGCCTGCATCCGGACGTGCGGGCCGCCGGTT
CGGAGGTGCACTTCTTCGACAGGCACTACCAGCGGGGACTACGCTGGTAC
CGCCACCACATGCCGTACACTATCGAGGGCCAGATCACCATGGAGAAGAC
GCCCAGCTACTTCGTCACCAAGGAGGTGCCGCAGCGCGTCTACCACATGA
ATCCGGCAACAAAATTACTGATTGTGGTGCGGGATCCGGTGACGCGGGCC
ATCTCCGACTACACACAGGCGGCGAGCAAGAAGGCGGACATGAAGCTCTT
CGAGCAGCTGGCCTTCGTCAACGGTAGCTACTCGGTGGTGGACACCAACT
GGGGCCCGGTGAAGATCGGCGTCTATGCACGCTATCTGGAGCGCTGGCTG
CTCTACTTTCCGCTCTCGCAGCTGCTCTTCATCAGCGGCGAGCGGCTGAT
CATGGATCCCGCCTACGAGATTGGACGCGTACAGGACTTCCTCGGTCTGA
AGCGCGTGGTCACCGAGAAGCACTTCTACTTCAATGCCACCAAGGGCTTC
CCCTGCCTCTTCAAGTCGGAGGCACGCTCCACGCCCCACTGTCTGGGTAA
GACCAAGGGGCGCAACCATCCGCACATAGATCCCGGGGCCATCGAGCGCC
TCCGGGAGTTCTACCGGCCCTTCAACAACAAGTTCTACCAGCTGACGGGC
ATCAACTTCGCCTGGCCAGCATGCTTTCTAGACCAT

BO11617.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-B-RB 1155 CG7890-PB 1..1152 17..1168 5760 100 Plus
Hs3st-B-RA 1155 CG7890-PA 1..1152 17..1168 5760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-B-RB 2265 CG7890-RB 503..1654 17..1168 5760 100 Plus
Hs3st-B-RA 2092 CG7890-RA 154..1305 17..1168 5760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19250754..19251258 664..1168 2525 100 Plus
X 23542271 X 19249735..19250202 196..663 2340 100 Plus
X 23542271 X 19249141..19249323 17..199 915 100 Plus
Blast to na_te.dros performed on 2014-11-27 02:07:44 has no hits.

BO11617.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:22 Download gff for BO11617.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 67..1218 17..1168 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:06 Download gff for BO11617.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 154..1305 17..1170 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:24 Download gff for BO11617.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 67..1218 17..1170 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:58 Download gff for BO11617.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 154..1305 17..1170 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:58 Download gff for BO11617.complete
Subject Subject Range Query Range Percent Splice Strand
X 19249141..19249323 17..199 100 -> Plus
X 19249739..19250202 200..663 100 -> Plus
X 19250754..19251258 664..1170 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:06 Download gff for BO11617.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19143174..19143356 17..199 100 -> Plus
arm_X 19143772..19144235 200..663 100 -> Plus
arm_X 19144787..19145291 664..1170 99   Plus

BO11617.pep Sequence

Translation from 16 to 1186

> BO11617.pep
MRDTAATSAQPAMIVMSIWCSSLSLSSRSLAIALVICVTLVYFSYSFNAC
LLASISRSLQQSNLRNLLALTSSPRNETNNAANSSSSNSSSSRNSSSTTG
APPAQTVTSSLDGAPKYQLLRQQGLRPSRHLPDTLIIGVKKSGTRALLEF
IRLHPDVRAAGSEVHFFDRHYQRGLRWYRHHMPYTIEGQITMEKTPSYFV
TKEVPQRVYHMNPATKLLIVVRDPVTRAISDYTQAASKKADMKLFEQLAF
VNGSYSVVDTNWGPVKIGVYARYLERWLLYFPLSQLLFISGERLIMDPAY
EIGRVQDFLGLKRVVTEKHFYFNATKGFPCLFKSEARSTPHCLGKTKGRN
HPHIDPGAIERLREFYRPFNNKFYQLTGINFAWPACFLDH

BO11617.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-B-PB 384 CG7890-PB 1..384 1..384 1998 100 Plus
Hs3st-B-PA 384 CG7890-PA 1..384 1..384 1998 100 Plus
Hs3st-A-PB 605 CG33147-PB 145..353 30..240 400 44 Plus
Hs3st-A-PA 605 CG33147-PA 145..353 30..240 400 44 Plus
Hs3st-A-PB 605 CG33147-PB 452..603 226..384 336 43.8 Plus
Hs3st-A-PA 605 CG33147-PA 452..603 226..384 336 43.8 Plus
sfl-PB 1048 CG8339-PB 758..1027 131..376 288 30.5 Plus