Clone Sequence Records
BO11617.3prime Sequence
873 bp (835 high quality bases) assembled on 2006-04-19
> BO11617.3prime
ATGGTCTAGAAAGCATGCTGGCCAGGCGAAGTTGATGCCCGTCAGCTGGT
AGAACTTGTTGTTGAAGGGCCGGTAGAACTCCCGGAGGCGCTCGATGGCC
CCGGGATCTATGTGCGGATGGTTGCGCCCCTTGGTCTTACCCAGACAGTG
GGGCGTGGAGCGTGCCTCCGACTTGAAGAGGCAGGGGAAGCCCTTGGTGG
CATTGAAGTAGAAGTGCTTCTCGGTGACCACGCGCTTCAGACCGAGGAAG
TCCTGTACGCGTCCAATCTCGTAGGCGGGATCCATGATCAGCCGCTCGCC
GCTGATGAAGAGCAGCTGCGAGAGCGGAAAGTAGAGCAGCCAGCGCTCCA
GATAGCGTGCATAGACGCCGATCTTCACCGGGCCCCAGTTGGTGTCCACC
ACCGAGTAGCTACCGTTGACGAAGGCCAGCTGCTCGAAGAGCTTCATGTC
CGCCTTCTTGCTCGCCGCCTGTGTGTAGTCGGAGATGGCCCGCGTCACCG
GATCCCGCACCACAATCAGTAATTTTGTTGCCGGATTCATGTGGTAGACG
CGCTGCGGCACCTCCTTGGTGACGAAGTAGCTGGGCGTCTTCTCCATGGT
GATCTGGCCCTCGATAGTGTACGGCATGTGGTGGCGGTACCAGCGTAGTC
CCCGCTGGTAGTGCCTGTCGAAGAAGTGCACCTCCGAACCGGCGGCCCGC
ACGTCCGGATGCAGGCGGATGAACTCGAGCAGCGCCCGCGTCCCGCTCTT
CTTCACGCCAATGATGAGCGTGTCGGGCAGGTGGCGCGATGGTCGGAGCC
CCTGCTGACGGAGCAGCTGATACTTGGGCGCCCCATCCAGGCTGCTAGTA
ACCGTCTGTGCCGGCGGAGCACC
BO11617.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7890-PA | 1155 | CG7890-RA | 298..1152 | 873..19 | 4275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs3st-B-RB | 2265 | CG7890-RB | 800..1654 | 873..19 | 4275 | 100 | Minus |
Hs3st-B-RA | 2092 | CG7890-RA | 451..1305 | 873..19 | 4275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19250754..19251258 | 523..19 | 2525 | 100 | Minus |
X | 23542271 | X | 19249853..19250202 | 873..524 | 1750 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:31:54 has no hits.
BO11617.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:35 Download gff for
BO11617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7890-PA | 298..1155 | 18..873 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:11 Download gff for
BO11617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7890-PA | 298..1155 | 18..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:48 Download gff for
BO11617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-B-RA | 451..1305 | 19..873 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:43 Download gff for
BO11617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-B-RA | 451..1305 | 19..873 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:43 Download gff for
BO11617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19249853..19250202 | 524..873 | 100 | -> | Minus |
X | 19250754..19251258 | 19..523 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:48 Download gff for
BO11617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19143886..19144235 | 524..873 | 100 | -> | Minus |
arm_X | 19144787..19145291 | 19..523 | 100 | | Minus |
BO11617.5prime Sequence
907 bp (788 high quality bases) assembled on 2006-04-19
> BO11617.5prime
GAAGTTATCAGTCGACATGCGAGACACGGCAGCCACTAGCGCCCAGCCAG
CCATGATTGTGATGAGCATCTGGTGCAGCAGCCTCAGCCTGAGCAGCCGC
AGCCTGGCCATCGCCCTGGTGATCTGCGTGACTCTGGTCTACTTCTCCTA
CAGCTTCAATGCCTGCCTCCTGGCCAGCATCAGTCGCAGTCTGCAGCAGA
GCAACTTACGCAATCTACTGGCGCTGACCTCCTCGCCCCGCAACGAGACC
AATAACGCCGCCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGGAACAG
CTCATCCACCACCGGTGCTCCGCCGGCACAGACGGTTACTAGCAGCCTGG
ATGGGGCGCCCAAGTATCAGCTGCTCCGTCAGCAGGGGCTCCGACCATCG
CGCCACCTGCCCGACACGCTCATCATTGGCGTGAAGAAGAGCGGGACGCG
GGCGCTGCTCGAGTTCATCCGCCTGCATCCGGACGTGCGGGCCGCCGGTT
CGGAGGTGCACTTCTTCGACAGGCACTACCAGCGGGGACTACGCTGGTAC
CGCCACCACATGCCGTACACTATCGAGGGCCAGATCACCATGGAGAAGAC
GCCCAGCTACTTCGTCACCAAGGAGGTGCCGCAGCGCGTCTACCACATGA
ATCCGGCAACAAAATTACTGATTGTGGTGCGGGATCCGGTGACGCGGGCC
ATCTCCGACTACACACAGGCGGCGAGCAAGAAGGCGGACATGAAGCTCTT
CGAGCAGCTGGCCTTCGTCAACGGTAGCTACTCGGTGGTGGACACCAACT
GGGGCCGGGTGAAGATCGGCGTCTATGCACGCTATCTGGAGCGCTGGCTG
CTCTACTTTCCGCTCTCGCAACTGCTCTTCATCAGCGGCGAGCGGCTGAT
CATGGAT
BO11617.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7890-PA | 1155 | CG7890-RA | 1..891 | 17..907 | 4405 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 06:59:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs3st-B-RB | 2265 | CG7890-RB | 503..1393 | 17..907 | 4425 | 99.8 | Plus |
Hs3st-B-RA | 2092 | CG7890-RA | 154..1044 | 17..907 | 4425 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 06:59:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19249735..19250202 | 196..663 | 2340 | 100 | Plus |
X | 23542271 | X | 19250754..19250997 | 664..907 | 1190 | 99.2 | Plus |
X | 23542271 | X | 19249141..19249323 | 17..199 | 915 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 06:59:20 has no hits.
BO11617.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:36 Download gff for
BO11617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7890-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:13 Download gff for
BO11617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7890-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:06:30 Download gff for
BO11617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-B-RA | 154..1044 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:42:50 Download gff for
BO11617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-B-RA | 154..1044 | 17..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:42:50 Download gff for
BO11617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19249141..19249323 | 17..199 | 100 | -> | Plus |
X | 19249739..19250202 | 200..663 | 100 | -> | Plus |
X | 19250754..19250997 | 664..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:06:30 Download gff for
BO11617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19143174..19143356 | 17..199 | 100 | -> | Plus |
arm_X | 19143772..19144235 | 200..663 | 100 | -> | Plus |
arm_X | 19144787..19145030 | 664..907 | 99 | | Plus |
BO11617.complete Sequence
1186 bp assembled on 2008-08-15
> BO11617.complete
GAAGTTATCAGTCGACATGCGAGACACGGCAGCCACTAGCGCCCAGCCAG
CCATGATTGTGATGAGCATCTGGTGCAGCAGCCTCAGCCTGAGCAGCCGC
AGCCTGGCCATCGCCCTGGTGATCTGCGTGACTCTGGTCTACTTCTCCTA
CAGCTTCAATGCCTGCCTCCTGGCCAGCATCAGTCGCAGTCTGCAGCAGA
GCAACTTACGCAATCTACTGGCGCTGACCTCCTCGCCCCGCAACGAGACC
AATAACGCCGCCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGGAACAG
CTCATCCACCACCGGTGCTCCGCCGGCACAGACGGTTACTAGCAGCCTGG
ATGGGGCGCCCAAGTATCAGCTGCTCCGTCAGCAGGGGCTCCGACCATCG
CGCCACCTGCCCGACACGCTCATCATTGGCGTGAAGAAGAGCGGGACGCG
GGCGCTGCTCGAGTTCATCCGCCTGCATCCGGACGTGCGGGCCGCCGGTT
CGGAGGTGCACTTCTTCGACAGGCACTACCAGCGGGGACTACGCTGGTAC
CGCCACCACATGCCGTACACTATCGAGGGCCAGATCACCATGGAGAAGAC
GCCCAGCTACTTCGTCACCAAGGAGGTGCCGCAGCGCGTCTACCACATGA
ATCCGGCAACAAAATTACTGATTGTGGTGCGGGATCCGGTGACGCGGGCC
ATCTCCGACTACACACAGGCGGCGAGCAAGAAGGCGGACATGAAGCTCTT
CGAGCAGCTGGCCTTCGTCAACGGTAGCTACTCGGTGGTGGACACCAACT
GGGGCCCGGTGAAGATCGGCGTCTATGCACGCTATCTGGAGCGCTGGCTG
CTCTACTTTCCGCTCTCGCAGCTGCTCTTCATCAGCGGCGAGCGGCTGAT
CATGGATCCCGCCTACGAGATTGGACGCGTACAGGACTTCCTCGGTCTGA
AGCGCGTGGTCACCGAGAAGCACTTCTACTTCAATGCCACCAAGGGCTTC
CCCTGCCTCTTCAAGTCGGAGGCACGCTCCACGCCCCACTGTCTGGGTAA
GACCAAGGGGCGCAACCATCCGCACATAGATCCCGGGGCCATCGAGCGCC
TCCGGGAGTTCTACCGGCCCTTCAACAACAAGTTCTACCAGCTGACGGGC
ATCAACTTCGCCTGGCCAGCATGCTTTCTAGACCAT
BO11617.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs3st-B-RB | 1155 | CG7890-PB | 1..1152 | 17..1168 | 5760 | 100 | Plus |
Hs3st-B-RA | 1155 | CG7890-PA | 1..1152 | 17..1168 | 5760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:07:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs3st-B-RB | 2265 | CG7890-RB | 503..1654 | 17..1168 | 5760 | 100 | Plus |
Hs3st-B-RA | 2092 | CG7890-RA | 154..1305 | 17..1168 | 5760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19250754..19251258 | 664..1168 | 2525 | 100 | Plus |
X | 23542271 | X | 19249735..19250202 | 196..663 | 2340 | 100 | Plus |
X | 23542271 | X | 19249141..19249323 | 17..199 | 915 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:07:44 has no hits.
BO11617.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:22 Download gff for
BO11617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-B-RA | 67..1218 | 17..1168 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:06 Download gff for
BO11617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-B-RA | 154..1305 | 17..1170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:24 Download gff for
BO11617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-B-RA | 67..1218 | 17..1170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:58 Download gff for
BO11617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-B-RA | 154..1305 | 17..1170 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:58 Download gff for
BO11617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19249141..19249323 | 17..199 | 100 | -> | Plus |
X | 19249739..19250202 | 200..663 | 100 | -> | Plus |
X | 19250754..19251258 | 664..1170 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:06 Download gff for
BO11617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19143174..19143356 | 17..199 | 100 | -> | Plus |
arm_X | 19143772..19144235 | 200..663 | 100 | -> | Plus |
arm_X | 19144787..19145291 | 664..1170 | 99 | | Plus |
BO11617.pep Sequence
Translation from 16 to 1186
> BO11617.pep
MRDTAATSAQPAMIVMSIWCSSLSLSSRSLAIALVICVTLVYFSYSFNAC
LLASISRSLQQSNLRNLLALTSSPRNETNNAANSSSSNSSSSRNSSSTTG
APPAQTVTSSLDGAPKYQLLRQQGLRPSRHLPDTLIIGVKKSGTRALLEF
IRLHPDVRAAGSEVHFFDRHYQRGLRWYRHHMPYTIEGQITMEKTPSYFV
TKEVPQRVYHMNPATKLLIVVRDPVTRAISDYTQAASKKADMKLFEQLAF
VNGSYSVVDTNWGPVKIGVYARYLERWLLYFPLSQLLFISGERLIMDPAY
EIGRVQDFLGLKRVVTEKHFYFNATKGFPCLFKSEARSTPHCLGKTKGRN
HPHIDPGAIERLREFYRPFNNKFYQLTGINFAWPACFLDH
BO11617.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs3st-B-PB | 384 | CG7890-PB | 1..384 | 1..384 | 1998 | 100 | Plus |
Hs3st-B-PA | 384 | CG7890-PA | 1..384 | 1..384 | 1998 | 100 | Plus |
Hs3st-A-PB | 605 | CG33147-PB | 145..353 | 30..240 | 400 | 44 | Plus |
Hs3st-A-PA | 605 | CG33147-PA | 145..353 | 30..240 | 400 | 44 | Plus |
Hs3st-A-PB | 605 | CG33147-PB | 452..603 | 226..384 | 336 | 43.8 | Plus |
Hs3st-A-PA | 605 | CG33147-PA | 452..603 | 226..384 | 336 | 43.8 | Plus |
sfl-PB | 1048 | CG8339-PB | 758..1027 | 131..376 | 288 | 30.5 | Plus |