Clone Sequence Records
BO11621.3prime Sequence
909 bp (813 high quality bases) assembled on 2006-04-19
> BO11621.3prime
ATGGTCTAGAAAGCTTGCGATCAGCGCCGTTATCAGCTTGGCCTTGAAGT
TCACGAACTTCTCGCTGGTGGCCGCAACGCGCAGAATCAAATCCTGGACG
AGATTGGCCAGACCGCGATTGGCCAGCACCACGAGGCGCGTGACTGGGCC
GGGAATGCCCTCGGTGTAGCCATCGGCGTTGCGAGTGCTATCGCCATCGG
CGTCACCATCGCCGCCCAAACTGCCGCTGCTACTGCTGCTGCCTGCACTG
CCGCCCACCGAGTTGGCCGCCTCATCGCCCTGCTGGGTCTGAACACTGCC
CGAAAAGAGCCTCACCACATCCAGCAGGAAGTTGCCGGAGCCGCCGGCTC
CCAGAGCATTGCCACTGGGCGAACCTCCTGCACCGCCGCTTGAGCCGCCG
GCGAGACCCGCACCGCCAAAGCTGAGGAACCTTTTGAACAGATTACTCTT
GTTGCGATCGTCCAGATCGGCGGTCTCCTCCGCAGAGTCTAGGGTGAGTT
CATCGATCGCCGGCGACTTGGACTCGGAGAGCTGGAGATCATTGGTGCTC
AGGGCCTTTTCGTTCACACCGGAGGACGGCGAGACACTGGGCAGTTCGTT
GTTGAAGCTCAGCTGGATGGGCTCGTTGGATTTGAGGGGAATGGGAGCCT
GGGCGACCGGCGAGGAGGCGGAGGACGAGGATGGGGACAGGGACTGGGCG
GCAACTGCGGCGGCGGCTGCTTCCGCCTCCTTCACCTGGCGGGCCACACG
GATTGTCTCCTCCAATTGCTTGTTGATGGCCGACAAATCGATCTGGGTAT
CAGTGGCTCCATTCTTGGTGATGTCGGGGAAAAGTTCGCGCAGCAGTCCA
ATCGTTCGTTTGTTGCGATCGGCTATCAATGATTCTTGGTCTTTGGCGCC
CAATGTCAA
BO11621.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32694-PA | 1050 | CG32694-RA | 157..1047 | 909..19 | 4430 | 99.8 | Minus |
CG32694-PC | 1050 | CG32694-RC | 157..1047 | 909..19 | 4430 | 99.8 | Minus |
CG32694-PD | 564 | CG32694-RD | 157..252 | 909..814 | 480 | 100 | Minus |
CG32694-PB | 1095 | CG32694-RB | 157..252 | 909..814 | 480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32694-RC | 2528 | CG32694-RC | 491..1381 | 909..19 | 4440 | 99.9 | Minus |
CG32694-RA | 2440 | CG32694-RA | 403..1293 | 909..19 | 4440 | 99.9 | Minus |
CG32694-RF | 2425 | CG32694-RF | 403..1278 | 909..19 | 4205 | 98.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:03:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10004389..10004759 | 816..446 | 1855 | 100 | Minus |
X | 23542271 | X | 10005374..10005602 | 310..82 | 1130 | 99.6 | Minus |
X | 23542271 | X | 10005148..10005289 | 451..310 | 695 | 99.3 | Minus |
X | 23542271 | X | 9999205..9999300 | 909..814 | 480 | 100 | Minus |
X | 23542271 | X | 10005672..10005735 | 82..19 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:04:00 has no hits.
BO11621.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:43 Download gff for
BO11621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-PC | 159..1050 | 15..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:23 Download gff for
BO11621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-PC | 159..1050 | 15..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:55:23 Download gff for
BO11621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RA | 405..1297 | 14..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:52:18 Download gff for
BO11621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RA | 405..1297 | 14..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:52:18 Download gff for
BO11621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9999207..9999300 | 814..907 | 100 | -> | Minus |
X | 10004392..10004759 | 446..813 | 100 | -> | Minus |
X | 10005154..10005289 | 310..445 | 100 | -> | Minus |
X | 10005375..10005602 | 82..309 | 99 | -> | Minus |
X | 10005673..10005739 | 14..81 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:55:23 Download gff for
BO11621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9893240..9893333 | 814..907 | 100 | -> | Minus |
arm_X | 9898425..9898792 | 446..813 | 100 | -> | Minus |
arm_X | 9899187..9899322 | 310..445 | 100 | -> | Minus |
arm_X | 9899408..9899635 | 82..309 | 99 | -> | Minus |
arm_X | 9899706..9899772 | 14..81 | 97 | | Minus |
BO11621.5prime Sequence
869 bp (829 high quality bases) assembled on 2006-04-19
> BO11621.5prime
GAAGTTATCAGTCGACATGAGGCAGCCAAGTAGACAGCACATCCTGGCGC
TCCTGATCCTCGGCAGCGCCGCCTGCCTCATCAGCGCCGTACCGCTACCG
CAGCCCGCCAACGGTAATTCCGAGCTGGACGTCCTCCAAATCCCGCTTGC
CAATGGCAAGGAAATCGATGTCTTGACATTGGGCGCCAAAGACCAAGAAT
CATTGATAGCCGATCGCAACAAACGAACGATTGGACTGCTGCGCGAACTT
TTCCCCGACATCACCAAGAATGGAGCCACTGATACCCAGATCGATTTGTC
GGCCATCAACAAGCAATTGGAGGAGACAATCCGTGTGGCCCGCCAGGTGA
AGGAGGCGGAAGCAGCCGCCGCCGCAGTTGCCGCCCAGTCCCTGTCCCCA
TCCTCGTCCTCCGCCTCCTCGCCGGTCGCCCAGGCTCCCATTCCCCTCAA
ATCCAACGAGCCCATCCAGCTGAGCTTCAACAACGAACTGCCCAGTGTCT
CGCCGTCCTCCGGTGTGAACGAAAAGGCCCTGAGCACCAATGATCTCCAG
CTCTCCGAGTCCAAGTCGCCGGCGATCGATGAACTCACCCTAGACTCTGC
GGAGGAGACCGCCGATCTGGACGATCGCAACAAGAGTAATCTGTTCAAAA
GGTTCCTCAGCTTTGGCGGTGCGGGTCTCGCCGGCGGCTCAAGCGGCGGT
GCAGGAGGTTCGCCCAGTGGCAATGCTCTGGGAGCCGGCGGCTCCGGCAA
CTTCCTGCTGGATGTGGTGAGGCTCTTTTCGGGCAGTGTTCAGACCCAGC
AGGGCGATGAGGCGGCCAACTCGGTGGGCGGCAATGCAGGCAGCAGCAGT
AGCAGCGGCAGTTTGGGCG
BO11621.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32694-PA | 1050 | CG32694-RA | 1..853 | 17..869 | 4215 | 99.7 | Plus |
CG32694-PC | 1050 | CG32694-RC | 1..853 | 17..869 | 4215 | 99.7 | Plus |
CG32694-PB | 1095 | CG32694-RB | 1..252 | 17..268 | 1260 | 100 | Plus |
CG32694-PD | 564 | CG32694-RD | 1..252 | 17..268 | 1260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:33:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32694-RC | 2528 | CG32694-RC | 334..1187 | 16..869 | 4240 | 99.8 | Plus |
CG32694-RA | 2440 | CG32694-RA | 246..1099 | 16..869 | 4240 | 99.8 | Plus |
CG32694-RF | 2425 | CG32694-RF | 246..1084 | 16..869 | 4005 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10004389..10004759 | 266..636 | 1855 | 100 | Plus |
X | 23542271 | X | 9993045..9993190 | 16..161 | 730 | 100 | Plus |
X | 23542271 | X | 10005148..10005289 | 631..772 | 695 | 99.3 | Plus |
X | 23542271 | X | 9999191..9999300 | 159..268 | 550 | 100 | Plus |
X | 23542271 | X | 10005374..10005471 | 772..869 | 460 | 98 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:33:39 has no hits.
BO11621.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:44 Download gff for
BO11621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-PC | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:24 Download gff for
BO11621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-PC | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:44:58 Download gff for
BO11621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RA | 243..1099 | 9..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:05 Download gff for
BO11621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RA | 243..1099 | 9..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:05 Download gff for
BO11621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10005375..10005471 | 773..869 | 97 | | Plus |
X | 9993042..9993189 | 9..160 | 97 | -> | Plus |
X | 9999193..9999300 | 161..268 | 100 | -> | Plus |
X | 10004392..10004759 | 269..636 | 100 | -> | Plus |
X | 10005154..10005289 | 637..772 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:44:58 Download gff for
BO11621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9899408..9899504 | 773..869 | 97 | | Plus |
arm_X | 9887075..9887222 | 9..160 | 97 | -> | Plus |
arm_X | 9893226..9893333 | 161..268 | 100 | -> | Plus |
arm_X | 9898425..9898792 | 269..636 | 100 | -> | Plus |
arm_X | 9899187..9899322 | 637..772 | 100 | -> | Plus |
BO11621.complete Sequence
1081 bp assembled on 2006-10-11
GenBank Submission: FJ632131
> BO11621.complete
GAAGTTATCAGTCGACATGAGGCAGCCAAGTAGACAGCACATCCTGGCGC
TCCTGATCCTCGGCAGCGCCGCCTGCCTCATCAGCGCCGTACCGCTACCG
CAGCCCGCCAACGGTAATTCCGAGCTGGACGTCCTCCAAATCCCGCTTGC
CAATGGCAAGGAAATCGATGTCTTGACATTGGGCGCCAAAGACCAAGAAT
CATTGATAGCCGATCGCAACAAACGAACGATTGGACTGCTGCGCGAACTT
TTCCCCGACATCACCAAGAATGGAGCCACTGATACCCAGATCGATTTGTC
GGCCATCAACAAGCAATTGGAGGAGACAATCCGTGTGGCCCGCCAGGTGA
AGGAGGCGGAAGCAGCCGCCGCCGCAGTTGCCGCCCAGTCCCTGTCCCCA
TCCTCGTCCTCCGCCTCCTCGCCGGTCGCCCAGGCTCCCATTCCCCTCAA
ATCCAACGAGCCCATCCAGCTGAGCTTCAACAACGAACTGCCCAGTGTCT
CGCCGTCCTCCGGTGTGAACGAAAAGGCCCTGAGCACCAATGATCTCCAG
CTCTCCGAGTCCAAGTCGCCGGCGATCGATGAACTCACCCTAGACTCTGC
GGAGGAGACCGCCGATCTGGACGATCGCAACAAGAGTAATCTGTTCAAAA
GGTTCCTCAGCTTTGGCGGTGCGGGTCTCGCCGGCGGCTCAAGCGGCGGT
GCAGGAGGTTCGCCCAGTGGCAATGCTCTGGGAGCCGGCGGCTCCGGCAA
CTTCCTGCTGGATGTGGTGAGGCTCTTTTCGGGCAGTGTTCAGACCCAGC
AGGGCGATGAGGCGGCCAACTCGGTGGGCGGCAGTGCAGGCAGCAGCAGT
AGCAGCGGCAGTTTGGGCGGCGATGGTGACGCCGATGGCGATAGCACTCG
CAACGCCGATGGCTACACCGAGGGCATTCCCGGCCCAGTCACGCGCCTCG
TGGTGCTGGCCAATCGCGGTCTGGCCAATCTCGTCCAGGATTTGATTCTG
CGCGTTGCGGCCACCAGCGAGAAGTTCGTGAACTTCAAGGCCAAGCTGAT
AACGGCGCTGATCGCAAGCTTTCTAGACCAT
BO11621.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:22:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32694-RC | 1050 | CG32694-PC | 1..1047 | 17..1063 | 5220 | 99.9 | Plus |
CG32694-RA | 1050 | CG32694-PA | 1..1047 | 17..1063 | 5220 | 99.9 | Plus |
CG32694-RF | 1035 | CG32694-PF | 1..1032 | 17..1063 | 4960 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32694-RC | 2528 | CG32694-RC | 334..1381 | 16..1063 | 5225 | 99.9 | Plus |
CG32694-RA | 2440 | CG32694-RA | 246..1293 | 16..1063 | 5225 | 99.9 | Plus |
CG32694-RF | 2425 | CG32694-RF | 246..1278 | 16..1063 | 4965 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:22:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10004389..10004759 | 266..636 | 1855 | 100 | Plus |
X | 23542271 | X | 10005374..10005602 | 772..1000 | 1130 | 99.6 | Plus |
X | 23542271 | X | 9993045..9993190 | 16..161 | 730 | 100 | Plus |
X | 23542271 | X | 10005148..10005289 | 631..772 | 695 | 99.3 | Plus |
X | 23542271 | X | 9999191..9999300 | 159..268 | 550 | 100 | Plus |
X | 23542271 | X | 10005672..10005735 | 1000..1063 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:22:35 has no hits.
BO11621.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:25 Download gff for
BO11621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RC | 1..1050 | 17..1067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:52 Download gff for
BO11621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RC | 335..1381 | 17..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:12 Download gff for
BO11621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RA | 247..1293 | 17..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:25 Download gff for
BO11621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RC | 331..1385 | 9..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:16:41 Download gff for
BO11621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RA | 247..1293 | 17..1065 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:16:41 Download gff for
BO11621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10005375..10005602 | 773..1000 | 99 | -> | Plus |
X | 10005673..10005735 | 1001..1065 | 96 | | Plus |
X | 9993046..9993189 | 17..160 | 100 | -> | Plus |
X | 9999193..9999300 | 161..268 | 100 | -> | Plus |
X | 10004392..10004759 | 269..636 | 100 | -> | Plus |
X | 10005154..10005289 | 637..772 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:12 Download gff for
BO11621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9887079..9887222 | 17..160 | 100 | -> | Plus |
arm_X | 9893226..9893333 | 161..268 | 100 | -> | Plus |
arm_X | 9898425..9898792 | 269..636 | 100 | -> | Plus |
arm_X | 9899187..9899322 | 637..772 | 100 | -> | Plus |
arm_X | 9899408..9899635 | 773..1000 | 99 | -> | Plus |
arm_X | 9899706..9899768 | 1001..1065 | 96 | | Plus |
BO11621.pep Sequence
Translation from 16 to 1081
> BO11621.pep
MRQPSRQHILALLILGSAACLISAVPLPQPANGNSELDVLQIPLANGKEI
DVLTLGAKDQESLIADRNKRTIGLLRELFPDITKNGATDTQIDLSAINKQ
LEETIRVARQVKEAEAAAAAVAAQSLSPSSSSASSPVAQAPIPLKSNEPI
QLSFNNELPSVSPSSGVNEKALSTNDLQLSESKSPAIDELTLDSAEETAD
LDDRNKSNLFKRFLSFGGAGLAGGSSGGAGGSPSGNALGAGGSGNFLLDV
VRLFSGSVQTQQGDEAANSVGGSAGSSSSSGSLGGDGDADGDSTRNADGY
TEGIPGPVTRLVVLANRGLANLVQDLILRVAATSEKFVNFKAKLITALIA
SFLDH
BO11621.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32694-PC | 349 | CG32694-PC | 1..349 | 1..349 | 1707 | 100 | Plus |
CG32694-PA | 349 | CG32694-PA | 1..349 | 1..349 | 1707 | 100 | Plus |
CG32694-PF | 344 | CG32694-PF | 1..344 | 1..349 | 1666 | 98.6 | Plus |
CG32694-PG | 195 | CG32694-PG | 1..185 | 1..166 | 435 | 55.7 | Plus |
CG32694-PE | 187 | CG32694-PE | 1..142 | 1..135 | 429 | 70.4 | Plus |