Clone Sequence Records
BO11626.3prime Sequence
829 bp (788 high quality bases) assembled on 2006-04-19
> BO11626.3prime
ATGGTCTAGAAAGCTTGCGATGTTGCGGAAGTGCCGGATGGCCAGGTCCA
CCGGCAGGTCGAAGTCAAATCGAGAAAGAGCATCGATGGAGCGCAGTGAG
TCGCGGAATCCGGTGCGGGCCACGTAGCTGTCTGCTGAGTAGTACGTGTC
CACCAGTTCATGGCAGCTGAGGATCAGGTTCAGCCACTCCACCAGCAAAT
GGGAATTGAGTCCGGCGCAGACGAAGGCTTTAAAGTGCGCGTTGTTACTC
CGTTTGTATGGACGATGCATTGCCAGAATCATGCCCACGGCGCTGAGCAA
ACTTTGCTTGGCGGTCACAGCCTGCGCGTCCACGATGTCCAGCTGGAAGC
TCTGCGACAACTTTCTGGCAGGCGTGTTGTTGTACTCCTCGCCGTGTTTC
AACCTATAATAGGCTAGTACTAGTTCCCAGGCGTGCATGGCCCTGCCCAA
GCCGAGGAACTGCGAGTCTCCTCCGACGGCGGGCGGCACTACCGGAGGCC
CAGGGTGCAGGCACCTCATGAAGGGAACCATCAAACTGGAGGCAGCCGAT
TCCGCTGGTATGCGAAGTCCGTGTTGTATAAGCTGCTGCAATGTGCGGGC
AAAGTTCTTCCGCACAACCGTAGTCAATTCCCTGCCAATAGTGGCAATGG
AATCACCGCGTGCATGCGTCGTCCGCCGGCTCTTGCTCTCCTTTTCCCAC
TCGAAGTTGGAGTAGCTAATGTCTTCGTCGGAGTCGGAGGATATGGCGCC
CCCGGACGCATATGGAGCCAGTTCGTGACCAGTTGGCACTGCTCGCCGGC
AACGAAGCGGCAGGGTCAGTGCTCCGTTT
BO11626.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3703-PA | 2136 | CG3703-RA | 1323..2133 | 829..19 | 4030 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3703-RA | 2496 | CG3703-RA | 1550..2360 | 829..19 | 4040 | 99.9 | Minus |
| mus81-RA | 2155 | CG3026-RA | 1536..1722 | 19..205 | 935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 943302..943925 | 206..829 | 3105 | 99.8 | Plus |
| X | 23542271 | X | 942610..942796 | 19..205 | 935 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:51:52 has no hits.
BO11626.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:53 Download gff for
BO11626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-PA | 1323..2136 | 15..829 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:39 Download gff for
BO11626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-PA | 1323..2136 | 15..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:53:21 Download gff for
BO11626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-RA | 1550..2364 | 14..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:13 Download gff for
BO11626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-RA | 1550..2364 | 14..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:13 Download gff for
BO11626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 942606..942796 | 14..205 | 98 | <- | Plus |
| X | 943302..943925 | 206..829 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:53:21 Download gff for
BO11626.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 836639..836829 | 14..205 | 98 | <- | Plus |
| arm_X | 837335..837958 | 206..829 | 99 | | Plus |
BO11626.5prime Sequence
819 bp (790 high quality bases) assembled on 2006-04-19
> BO11626.5prime
GAAGTTATCAGTCGACATGGAAATGAAAATGGCAGAGGCCCAGGAAACCA
AGGACTCTTGCTCGACGATCGAAGGCCAGCTGCCAGCTGGACCTGTTCGT
GCTGAAGATGAGGAGGAAGAAGTGGAGGTCGAACAAGAGCAGCAGGAGCT
GCTAAGCGAACGGTGGTCGCCGTTGGGAGCCAACTACGATGACGCGAATA
GCGCCAGTTCTGGCGTGGATTGCGAACTAGAACCAGGACTGGAAAAGTCA
GAAGCGCGACGTGGAAGCACTGGCAGCGAACTGGCCCGTCTGCGAAGCAT
AGAGGAGGAGCAGGAGCTTCTGACAAGTTCTCTGCTGGCTTTGACCTCCC
ACTTTGCTCACGTCCAGCTTAGAGTCCGCCAAATCGTGGAGGCGCCAGCG
GAGGAGCGGGATCAACTTTTACGCGACCTCGAGGACTTCGCCTTCCAAGG
AATTCCAGACGCAGTCCAGTCCAAGGAATCCCATCCAGATAAGCCCGCAA
GCGATGGTGAAAAGGACCATGGTCCTGATAGCCAGCTCATCCAACAACTG
AAGTCCCAGCTGACTGAGCTGGAACAAATAGCCTACGAGGCTGGCGAACC
TGGCATCCTGCCGCAGCACGTATTGCTCGAGAAGCAAAAGTTTATCCTGG
ACGAGCTGCGCGCCAAGCTCAATCTCCAGGTAGAGCAGCACGAACTGCCG
GCCCTTAGCACGGAACAACTGCGCCACCAGGTCGACAATGCCATCGGCGA
GTTTGTGGGCCCTCTGAAGATGAAGGAGCAACTGGTGGCCCAACTGAAGA
CGCAGATAACTGACTTGGA
BO11626.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:26:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3703-PA | 2136 | CG3703-RA | 1..803 | 17..819 | 4015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:34:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3703-RA | 2496 | CG3703-RA | 228..1030 | 17..819 | 4015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 944744..945546 | 819..17 | 4015 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:33:56 has no hits.
BO11626.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:53 Download gff for
BO11626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-PA | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:40 Download gff for
BO11626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-PA | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:45:01 Download gff for
BO11626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-RA | 223..1029 | 12..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:07 Download gff for
BO11626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-RA | 223..1029 | 12..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:07 Download gff for
BO11626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 944745..945551 | 12..818 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:45:01 Download gff for
BO11626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 838778..839584 | 12..818 | 99 | | Minus |
BO11626.complete Sequence
2167 bp assembled on 2008-01-17
GenBank Submission: FJ632132
> BO11626.complete
GAAGTTATCAGTCGACATGGAAATGAAAATGGCAGAGGCCCAGGAAACCA
AGGACTCTTGCTCGACGATCGAAGGCCAGCTGCCAGCTGGACCTGTTCGT
GCTGAAGATGAGGAGGAAGAAGTGGAGGTCGAACAAGAGCAGCAGGAGCT
GCTAAGCGAACGGTGGTCGCCGTTGGGAGCCAACTACGATGACGCGAATA
GCGCCAGTTCTGGCGTGGATTGCGAACTAGAACCAGGACTGGAAAAGTCA
GAAGCGCGACGTGGAAGCACTGGCAGCGAACTGGCCCGTCTGCGAAGCAT
AGAGGAGGAGCAGGAGCTTCTGACAAGTTCTCTGCTGGCTTTGACCTCCC
ACTTTGCTCACGTCCAGCTTAGAGTCCGCCAAATCGTGGAGGCGCCAGCG
GAGGAGCGGGATCAACTTTTACGCGACCTCGAGGACTTCGCCTTCCAAGG
AATTCCAGACGCAGTCCAGTCCAAGGAATCCCATCCAGATAAGCCCGCAA
GCGATGGTGAAAAGGACCATGGTCCTGATAGCCAGCTCATCCAACAACTG
AAGTCCCAGCTGACTGAGCTGGAACAAATAGCCTACGAGGCTGGCGAACC
TGGCATCCTGCCGCAGCACGTATTGCTCGAGAAGCAAAAGTTTATCCTGG
ACGAGCTGCGCGCCAAGCTCAATCTCCAGGTAGAGCAGCACGAACTGCCG
GCCCTTAGCACGGAACAACTGCGCCACCAGGTCGACAATGCCATCGGCGA
GTTTGTGGGCCCTCTGAAGATGAAGGAGCAACTGGTGGCCCAACTGAAGA
CGCAGATAACTGACTTGGAGCGCTTCATTGCCTTCCTTCAGTGCGATGCC
ATTGAGGGATCCGTTGGGGATCGACTGAAGCTTCTATCCGGTGCGTACAA
CAGCTACGCTGCAAAGCAGACAGCACGGAGTTCACAGGCAAGTTACGTTG
CCACAAACGCTCCAGCTACGACAGCTACTACCCCGCCATCCTCGGGATTG
GGTGCCCATTCTTCCGGCGAGAGCTTGCACAGCAAGGCACATGGCTTGCT
GGACAAGGCTTCGGTCCTCATGCAAATGTTCGCCAGCACGCATCTGGTGA
AACCACGAACTCACGACGAATTCCAGCAAAATTCGCTGAAGAAGACGCAC
AAGGGCAACCACTGGGGGGATCTACGTGCCCAGCTTGAGGTGGACATCCA
GGAAGTAGCTGCACTGGCCGCCACTTTGAGCTGCGACCGCGAGAAGTTGG
CCAACATCAAGAGAGCTTTGCGCAAACAGCAACAACAGGCGGAGTCAACC
GAATTCTCCGACACTGGCAATCCGGTTATTAACTCACAAAACGGAGCACT
GACCCTGCCGCCTCGTTGCCGGCGAGCAGTGCCAACTGGTCACGAACTGG
CTCCATATGCGTCCGGGGGCGCCATATCCTCCGACTCCGACGAAGACATT
AGCTACTCCAACTTCGAGTGGGAAAAGGAGAGCAAGAGCCGGCGGACGAC
GCATGCACGCGGTGATTCCATTGCCACTATTGGCAGGGAATTGACTACGG
TTGTGCGGAAGAACTTTGCCCGCACATTGCAGCAGCTTATACAACACGGA
CTTCGCATACCAGCGGAATCGGCTGCCTCCAGTTTGATGGTTCCCTTCAT
GAGGTGCCTGCACCCTGGGCCTCCGGTAGTGCCGCCCGCCGTCGGAGGAG
ACTCGCAGTTCCTCGGCTTGGGCAGGGCCATGCACGCCTGGGAACTAGTA
CTAGCCTATTATAGGTTGAAACACGGCGAGGAGTACAACAACACGCCTGC
CAGAAAGTTGTCGCAGAGCTTCCAGCTGGACATCGTGGACGCGCAGGCTG
TGACCGCCAAGCAAAGTTTGCTCAGCGCCGTGGGCATGATTCTGGCAATG
CATCGTCCATACAAACGGAGTAACAACGCGCACTTTAAAGCCTTCGTCTG
CGCCGGACTCAATTCCCATTTGCTGGTGGAGTGGCTGAACCTGATCCTCA
GCTGCCATGAACTGGTGGACACGTACTACTCAGCAGACAGCTACGTGGCC
CGCACCGGATTCCGCGACTCACTGCGCTCCATCGATGCTCTTTCTCGATT
TGACTTCGACCTGCCGGTGGACCTGGCCATCCGGCACTTCCGCAACATCG
CAAGCTTTCTAGACCAT
BO11626.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:21:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3703-RA | 2136 | CG3703-PA | 1..2133 | 17..2149 | 10665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3703-RA | 2496 | CG3703-RA | 228..2360 | 17..2149 | 10665 | 100 | Plus |
| mus81-RA | 2155 | CG3026-RA | 1536..1722 | 2149..1963 | 935 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 944395..945546 | 1168..17 | 5760 | 100 | Minus |
| X | 23542271 | X | 943302..944097 | 1962..1167 | 3980 | 100 | Minus |
| X | 23542271 | X | 942610..942796 | 2149..1963 | 935 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:21:20 has no hits.
BO11626.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:46 Download gff for
BO11626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-RA | 1..2136 | 17..2153 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:53 Download gff for
BO11626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-RA | 227..2359 | 17..2151 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:46 Download gff for
BO11626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-RA | 228..2360 | 17..2151 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:46 Download gff for
BO11626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-RA | 222..2363 | 12..2154 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:28 Download gff for
BO11626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3703-RA | 228..2360 | 17..2151 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:28 Download gff for
BO11626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 942608..942796 | 1963..2151 | 98 | <- | Minus |
| X | 943302..944096 | 1168..1962 | 100 | <- | Minus |
| X | 944396..945546 | 17..1167 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:46 Download gff for
BO11626.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 836641..836829 | 1963..2151 | 98 | <- | Minus |
| arm_X | 837335..838129 | 1168..1962 | 100 | <- | Minus |
| arm_X | 838429..839579 | 17..1167 | 100 | | Minus |
BO11626.pep Sequence
Translation from 16 to 2167
> BO11626.pep
MEMKMAEAQETKDSCSTIEGQLPAGPVRAEDEEEEVEVEQEQQELLSERW
SPLGANYDDANSASSGVDCELEPGLEKSEARRGSTGSELARLRSIEEEQE
LLTSSLLALTSHFAHVQLRVRQIVEAPAEERDQLLRDLEDFAFQGIPDAV
QSKESHPDKPASDGEKDHGPDSQLIQQLKSQLTELEQIAYEAGEPGILPQ
HVLLEKQKFILDELRAKLNLQVEQHELPALSTEQLRHQVDNAIGEFVGPL
KMKEQLVAQLKTQITDLERFIAFLQCDAIEGSVGDRLKLLSGAYNSYAAK
QTARSSQASYVATNAPATTATTPPSSGLGAHSSGESLHSKAHGLLDKASV
LMQMFASTHLVKPRTHDEFQQNSLKKTHKGNHWGDLRAQLEVDIQEVAAL
AATLSCDREKLANIKRALRKQQQQAESTEFSDTGNPVINSQNGALTLPPR
CRRAVPTGHELAPYASGGAISSDSDEDISYSNFEWEKESKSRRTTHARGD
SIATIGRELTTVVRKNFARTLQQLIQHGLRIPAESAASSLMVPFMRCLHP
GPPVVPPAVGGDSQFLGLGRAMHAWELVLAYYRLKHGEEYNNTPARKLSQ
SFQLDIVDAQAVTAKQSLLSAVGMILAMHRPYKRSNNAHFKAFVCAGLNS
HLLVEWLNLILSCHELVDTYYSADSYVARTGFRDSLRSIDALSRFDFDLP
VDLAIRHFRNIASFLDH
BO11626.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3703-PA | 711 | CG3703-PA | 1..711 | 1..711 | 3622 | 100 | Plus |
