Clone Sequence Records
BO11628.3prime Sequence
635 bp (634 high quality bases) assembled on 2006-04-19
> BO11628.3prime
ATGGTCTAGAAAGCTTGCTATGCGACGGCGCTTGTTGCTCTGCACCGGCG
GCGGCGTAGTGGAGGGGCTGATGGACTCGTTGGACATGGAGCCGCGTGTG
CGCTTGGCCGGACGCTTGGGCAGCTGCTCCTGGGGCTTGGCGACGGGCTT
TTTGTCGCCGTCCTTGGTGGAATTCGTCGGTACCGGCGTTTTGGTTGCAG
GTGGAGCTTTGCCATTGGTCTCTGCTGTTGGAGGGGCCGACTGTGCCTCT
GCAGCCTCCTCGTTCGCATGCACTTCCACCGTCTTTTTGGTCTGTAGCGT
TCCGTAATCCTGCTCCGGCAGGCTGAACTCGCGCTCCTCGTTGGGAAAGG
GCAGCGACTCCAGATCGTCCAGTTCCTTCAGCTTGTACATGGTGCCCAGG
TGGCGCCAGATCAGCTCGCTGGGCATTTCACGGTTCAGCGACTTGGACAG
ACGCTGGACAATGCAGGACATGTAGAAGTGCTTGTTGATGCCCACCGGGC
GCAGGCCTTCCATTGCATGGAACAGCTGCAGCTCTTCCTCGGCGGACCAC
TCGTGGTCGAGGGCGGCCGGTAAGGGGGCCGCCGTTCCGGCCACAGCCAG
ACCCTTGTCCTTGGCCATCATGTCGACTGATAACT
BO11628.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13746-PA | 606 | MrgBP-RA | 1..603 | 621..19 | 2990 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MrgBP-RA | 758 | CG13746-RA | 69..671 | 621..19 | 3000 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:36:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8900893..8901307 | 207..621 | 2060 | 99.8 | Plus |
| 2R | 25286936 | 2R | 8900653..8900842 | 19..208 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 17:36:19 has no hits.
BO11628.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:56 Download gff for
BO11628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-PA | 1..606 | 18..621 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:45 Download gff for
BO11628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13746-PA | 1..606 | 18..621 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:36:23 Download gff for
BO11628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 61..671 | 19..630 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:03:06 Download gff for
BO11628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 61..671 | 19..630 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:03:06 Download gff for
BO11628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8900653..8900840 | 19..206 | 100 | <- | Plus |
| 2R | 8900893..8901315 | 207..630 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:36:23 Download gff for
BO11628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4788158..4788345 | 19..206 | 100 | <- | Plus |
| arm_2R | 4788398..4788820 | 207..630 | 98 | | Plus |
BO11628.5prime Sequence
635 bp (634 high quality bases) assembled on 2006-04-19
> BO11628.5prime
GAAGTTATCAGTCGACATGATGGCCAAGGACAAGGGTCTGGCTGTGGCCG
GAACGGCGGCCCCCTTACCGGCCGCCCTCGACCACGAGTGGTCCGCCGAG
GAAGAGCTGCAGCTGTTCCATGCAATGGAAGGCCTGCGCCCGGTGGGCAT
CAACAAGCACTTCTACATGTCCTGCATTGTCCAGCGTCTGTCCAAGTCGC
TGAACCGTGAAATGCCCAGCGAGCTGATCTGGCGCCACCTGGGCACCATG
TACAAGCTGAAGGAACTGGACGATCTGGAGTCGCTGCCCTTTCCCAACGA
GGAGCGCGAGTTCAGCCTGCCGGAGCAGGATTACGGAACGCTACAGACCA
AAAAGACGGTGGAAGTGCATGCGAACGAGGAGGCTGCAGAGGCACAGTCG
GCCCCTCCAACAGCAGAGACCAATGGCAAAGCTCCACCTGCAACCAAAAC
GCCGGTACCGACGAATTCCACCAAGGACGGCGACAAAAAGCCCGTCGCCA
AGCCCCAGGAGCAGCTGCCCAAGCGTCCGGCCAAGCGCACACGCGGCTCC
ATGTCCAACGAGTCCATCAGCCCCTCCACTACGCCGCCGCCGGTGCAGAG
CAACAAGCGCCGTCGCATAGCAAGCTTTCTAGACC
BO11628.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13746-PA | 606 | MrgBP-RA | 1..603 | 17..619 | 2990 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:57:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MrgBP-RA | 758 | CG13746-RA | 69..671 | 17..619 | 3000 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:57:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8900893..8901307 | 431..17 | 2060 | 99.8 | Minus |
| 2R | 25286936 | 2R | 8900653..8900842 | 619..430 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:57:56 has no hits.
BO11628.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:57 Download gff for
BO11628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-PA | 1..606 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:46 Download gff for
BO11628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13746-PA | 1..606 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:40:25 Download gff for
BO11628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 61..671 | 8..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:21 Download gff for
BO11628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 61..671 | 8..619 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:21 Download gff for
BO11628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8900653..8900840 | 432..619 | 100 | <- | Minus |
| 2R | 8900893..8901315 | 8..431 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:40:25 Download gff for
BO11628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4788158..4788345 | 432..619 | 100 | <- | Minus |
| arm_2R | 4788398..4788820 | 8..431 | 98 | | Minus |
BO11628.complete Sequence
637 bp assembled on 2006-10-11
GenBank Submission: FJ632133
> BO11628.complete
GAAGTTATCAGTCGACATGATGGCCAAGGACAAGGGTCTGGCTGTGGCCG
GAACGGCGGCCCCCTTACCGGCCGCCCTCGACCACGAGTGGTCCGCCGAG
GAAGAGCTGCAGCTGTTCCATGCAATGGAAGGCCTGCGCCCGGTGGGCAT
CAACAAGCACTTCTACATGTCCTGCATTGTCCAGCGTCTGTCCAAGTCGC
TGAACCGTGAAATGCCCAGCGAGCTGATCTGGCGCCACCTGGGCACCATG
TACAAGCTGAAGGAACTGGACGATCTGGAGTCGCTGCCCTTTCCCAACGA
GGAGCGCGAGTTCAGCCTGCCGGAGCAGGATTACGGAACGCTACAGACCA
AAAAGACGGTGGAAGTGCATGCGAACGAGGAGGCTGCAGAGGCACAGTCG
GCCCCTCCAACAGCAGAGACCAATGGCAAAGCTCCACCTGCAACCAAAAC
GCCGGTACCGACGAATTCCACCAAGGACGGCGACAAAAAGCCCGTCGCCA
AGCCCCAGGAGCAGCTGCCCAAGCGTCCGGCCAAGCGCACACGCGGCTCC
ATGTCCAACGAGTCCATCAGCCCCTCCACTACGCCGCCGCCGGTGCAGAG
CAACAAGCGCCGTCGCATAGCAAGCTTTCTAGACCAT
BO11628.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MrgBP-RA | 606 | CG13746-PA | 1..603 | 17..619 | 3000 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MrgBP-RA | 758 | CG13746-RA | 69..671 | 17..619 | 3000 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8900893..8901307 | 431..17 | 2060 | 99.8 | Minus |
| 2R | 25286936 | 2R | 8900653..8900842 | 619..430 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:34:27 has no hits.
BO11628.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:32 Download gff for
BO11628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 1..606 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:44 Download gff for
BO11628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 58..668 | 8..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:14 Download gff for
BO11628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 69..671 | 17..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:32 Download gff for
BO11628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 58..668 | 8..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:25 Download gff for
BO11628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MrgBP-RA | 69..671 | 17..621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:25 Download gff for
BO11628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8900651..8900840 | 432..621 | 98 | <- | Minus |
| 2R | 8900893..8901307 | 17..431 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:14 Download gff for
BO11628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4788156..4788345 | 432..621 | 98 | <- | Minus |
| arm_2R | 4788398..4788812 | 17..431 | 99 | | Minus |
BO11628.pep Sequence
Translation from 16 to 637
> BO11628.pep
MMAKDKGLAVAGTAAPLPAALDHEWSAEEELQLFHAMEGLRPVGINKHFY
MSCIVQRLSKSLNREMPSELIWRHLGTMYKLKELDDLESLPFPNEEREFS
LPEQDYGTLQTKKTVEVHANEEAAEAQSAPPTAETNGKAPPATKTPVPTN
STKDGDKKPVAKPQEQLPKRPAKRTRGSMSNESISPSTTPPPVQSNKRRR
IASFLDH
BO11628.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MrgBP-PA | 201 | CG13746-PA | 1..201 | 1..201 | 1048 | 100 | Plus |
