Clone BO11629 Report

Search the DGRC for BO11629

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG9717-RA
Protein status:BO11629.pep:
Sequenced Size:1948

Clone Sequence Records

BO11629.3prime Sequence

843 bp (808 high quality bases) assembled on 2006-04-19

> BO11629.3prime
ATGGTCTAGAAAGCTTGCGATCGGGGGCGACTTCTCCGCCAGCTTGGCGT
GCAGGGTGTTAATATCGTATATGACCACCAGATCCTTGTTCAGACCCTCG
AAGACCTGCGCCACTCGCGGCTGCAGGTTGTAGAAGAACAGCGGCTGCTC
CCGCAGCTTAAAGTCCATCACCATGGTGGATATCACCTTGGCGGCCGTGA
AGTCCGCTCCATAGATGTGGGTGCAATCGATGACCACCGGCAGTGTGGAC
TTCTGACCCTGCTTGTTGATCACCTTGCGCACAAACTCCATCGAGGGGAA
GATCAGACAGCGATCGGGAGTTAGCATTAGGTATTTCAGACCAGTAGTTG
TCGCCAGCGTTTCGATGCGCAACTTTGGCCGGGCTGCCTGGTAGAGGATG
AAGACCACATTGATGCCGATGCCCACGAGGATGCCCAGTTGCAGGGGCAG
AACCAGACAGGCGAAAAAGGCACCCAGGCCGGGAATGAGATCGGTTTTTT
TACTGTGCCACATGGGCTTGATCACTCGGTACTGGACCATGAAAATAACC
GCCGCAATAATAATGGAGGCCAGAGCCGCCTTAGGAATGTAGTAAAAGCA
GGGCGTGAGGTACAACAGGGCAATAATCACTATCACGCTGGTGTAGAGAT
TGGACAGCTGGGTCCTCACTCCACTGGCATTTAAGATGGCTCCCCTGGCG
ATGCCGCCATTGCTCCGAAGACCCTGGACAAAGGAGTTGGCCACGTTGCA
CACTCCAGAGGCTATCAGCTCCTGCGTGGCATCTGTGGGTTTGCCATCAG
CGAAAGCCTGAACAACGGCCATAGTTTCCAGAAGAGCAATCAA

BO11629.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9717-PA 1917 CG9717-RA 1090..1914 843..19 4125 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9717-RA 2679 CG9717-RA 1324..2148 843..19 4125 100 Minus
CG9702-RB 2111 CG9702-RB 1390..1810 589..169 295 72.2 Minus
CG9702-RA 2318 CG9702-RA 1597..2017 589..169 295 72.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30584551..30584884 19..352 1670 100 Plus
3R 32079331 3R 30585289..30585596 498..805 1525 99.7 Plus
3R 32079331 3R 30585075..30585220 352..497 730 100 Plus
3R 32079331 3R 30581676..30581816 309..169 240 78 Minus
3R 32079331 3R 30585933..30585979 797..843 220 97.9 Plus
Blast to na_te.dros performed on 2015-02-09 03:46:38 has no hits.

BO11629.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:58 Download gff for BO11629.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9717-PA 1092..1917 16..841 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:48 Download gff for BO11629.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9717-PA 1092..1917 16..841 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:58:11 Download gff for BO11629.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9717-RA 1326..2148 19..841 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:28:58 Download gff for BO11629.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9717-RA 1326..2148 19..841 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:28:58 Download gff for BO11629.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30584551..30584883 19..351 100 <- Plus
3R 30585075..30585220 352..497 100 <- Plus
3R 30585289..30585591 498..800 100 <- Plus
3R 30585937..30585977 801..841 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:58:11 Download gff for BO11629.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26410797..26410942 352..497 100 <- Plus
arm_3R 26411011..26411313 498..800 100 <- Plus
arm_3R 26411659..26411699 801..841 100   Plus
arm_3R 26410273..26410605 19..351 100 <- Plus

BO11629.5prime Sequence

805 bp (777 high quality bases) assembled on 2006-04-19

> BO11629.5prime
GAAGTTATCAGTCGACATGAGCCAAAGAGCTGACAGCGGTCACACGAATA
GTGGCTTCAATGGTGGATCCGAGGTGTCCTTGGACATACCCACCAACACG
CTGTACCACACCTCGCGCGACTGCATTGTGCAGGAGGAGCAGGGTCCCGA
TGAGAGCTGCCTGGAGGGAACTCAAAGCTGTTGCTCAAACCTCTGGTCCA
ACATCTTCAGGAAGAAAACGCTGTACAAGCGATTCCCCATCCTGGTGTGG
CTGCCCCAGTACAAAAAGGATTATATTTTCGGTGACATAGTGGCGGGCAT
TTCGGTGGCCCTGACGGTGATACCCCAGGCCCTGGCCTATGCCGGAATAG
CAGGACTGGATCTGCAGTACGGCCTGTACGCCTGCTTCCTGGGCTGCTTC
ATATACATATTTATTGGGTCCAGTAAGGATGTGCCTATTGGACCTACGGC
CATATCAGCACTGCTGTCCTTTCAAATCGCTGGAGGCAGTTGGCAGATAG
CCACCTTGCTAACCTTCCTCACAGGTCTCATTGAGATCCTGATGGGAGTT
TTCCGGCTGGGATTTCTCATCGATTTCGTTTCTGGTCCCGTGGGAGCGGG
ATTCACGAGTGCCGTGTCCTTGATCATCTTCAGCTCCCAGATGAAGGACT
TCTTGGGCATCAAAACAAGTGGCAACACCTTCCTGCAAGTGTGGATTAGC
ATTGTGAACGATATACACAACATCAGCTGGCCGGACTTCATCTTGGGAAT
CGTCTGCATTACTCTGCTCCTGAGCCTGAGAGCCCTGGCCAGTTGTACCC
TGGGT

BO11629.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9717-PA 1917 CG9717-RA 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9717-RA 2679 CG9717-RA 235..1023 17..805 3945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30586280..30587068 805..17 3945 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:51:22 has no hits.

BO11629.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:59 Download gff for BO11629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9717-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:49 Download gff for BO11629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9717-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:02:02 Download gff for BO11629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9717-RA 235..1023 17..805 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:34 Download gff for BO11629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9717-RA 235..1023 17..805 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:34 Download gff for BO11629.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30586280..30587068 17..805 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:02:02 Download gff for BO11629.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26412002..26412790 17..805 100   Minus

BO11629.complete Sequence

1948 bp assembled on 2008-01-17

GenBank Submission: FJ632134

> BO11629.complete
GAAGTTATCAGTCGACATGAGCCAAAGAGCTGACAGCGGTCACACGAATA
GTGGCTTCAATGGTGGATCCGAGGTGTCCTTGGACATACCCACCAACACG
CTGTACCACACCTCGCGCGACTGCATTGTGCAGGAGGAGCAGGGTCCCGA
TGAGAGCTGCCTGGAGGGAACTCAAAGCTGTTGCTCAAACCTCTGGTCCA
ACATCTTCAGGAAGAAAACGCTGTACAAGCGATTCCCCATCCTGGTGTGG
CTGCCCCAGTACAAAAAGGATTATATTTTCGGTGACATAGTGGCGGGCAT
TTCGGTGGCCCTGACGGTGATACCCCAGGCCCTGGCCTATGCCGGAATAG
CAGGACTGGATCTGCAGTACGGCCTGTACGCCTGCTTCCTGGGCTGCTTC
ATATACATATTTATTGGGTCCAGTAAGGATGTGCCTATTGGACCTACGGC
CATATCAGCACTGCTGTCCTTTCAAATCGCTGGAGGCAGTTGGCAGATAG
CCACCTTGCTAACCTTCCTCACAGGTCTCATTGAGATCCTGATGGGAGTT
TTCCGGCTGGGATTTCTCATCGATTTCGTTTCTGGTCCCGTGGGAGCGGG
ATTCACGAGTGCCGTGTCCTTGATCATCTTCAGCTCCCAGATGAAGGACT
TCTTGGGCATCAAAACAAGTGGCAACACCTTCCTGCAAGTGTGGATTAGC
ATTGTGAACGATATACACAACATCAGCTGGCCGGACTTCATCTTGGGAAT
CGTCTGCATTACTCTGCTCCTGAGCCTGAGAGCCCTGGCCAGTTGTACCC
TGGGTCCCAAGGAGGGAAAAACCACAGCGCAAAAGCTTCTGACCGGCATT
TTCTGGACCATCGGAACTGCCCGCAATGCCCTGCTGGTCTGTGGAACTGC
TGGCCTGGGTTACTGGTTGTTTGTCAACGGCAAGGAGAATCTCGTGAAGA
CAGTTGGCTTTGTGCCCAAGGGATTGCCCTCCTTTCAGCCACCACCCTTC
CACATGGATGCCGTTGTCAACGAAACCACAGGAGAAGTCCTTCAGGAGGC
CCAGAGCTTCTGGGACATGGTCAGCACCCTGGGATCTGGGCTCATTGTGG
TTCCATTGATTGCTCTTCTGGAAACTATGGCCGTTGTTCAGGCTTTCGCT
GATGGCAAACCCACAGATGCCACGCAGGAGCTGATAGCCTCTGGAGTGTG
CAACGTGGCCAACTCCTTTGTCCAGGGTCTTCGGAGCAATGGCGGCATCG
CCAGGGGAGCCATCTTAAATGCCAGTGGAGTGAGGACCCAGCTGTCCAAT
CTCTACACCAGCGTGATAGTGATTATTGCCCTGTTGTACCTCACGCCCTG
CTTTTACTACATTCCTAAGGCGGCTCTGGCCTCCATTATTATTGCGGCGG
TTATTTTCATGGTCCAGTACCGAGTGATCAAGCCCATGTGGCACAGTAAA
AAAACCGATCTCATTCCCGGCCTGGGTGCCTTTTTCGCCTGTCTGGTTCT
GCCCCTGCAACTGGGCATCCTCGTGGGCATCGGCATCAATGTGGTCTTCA
TCCTCTACCAGGCAGCCCGGCCAAAGTTGCGCATCGAAACGCTGGCGACA
ACTACTGGTCTGAAATACCTAATGCTAACTCCCGATCGCTGTCTGATCTT
CCCCTCGATGGAGTTTGTGCGCAAGGTGATCAACAAGCAGGGTCAGAAGT
CCACACTGCCGGTGGTCATCGATTGCACCCACATCTATGGAGCGGACTTC
ACGGCCGCCAAGGTGATATCCACCATGGTGATGGACTTTAAGCTGCGGGA
GCAGCCGCTGTTCTTCTACAACCTGCAGCCGCGAGTGGCGCAGGTCTTCG
AGGGTCTGAACAAGGATCTGGTGGTCATATACGATATTAACACCCTGCAC
GCCAAGCTGGCGGAGAAGTCGCCCCCGATCGCAAGCTTTCTAGACCAT

BO11629.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9717-RA 1917 CG9717-PA 1..1914 17..1930 9570 100 Plus
CG9702-RB 2031 CG9702-PB 1365..1785 1360..1780 245 70.5 Plus
CG9702-RA 2031 CG9702-PA 1365..1785 1360..1780 245 70.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9717-RA 2679 CG9717-RA 235..2148 17..1930 9570 100 Plus
CG9702-RB 2111 CG9702-RB 1390..1810 1360..1780 245 70.5 Plus
CG9702-RA 2318 CG9702-RA 1597..2017 1360..1780 245 70.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30585933..30587068 1152..17 5665 99.9 Minus
3R 32079331 3R 30584551..30584884 1930..1597 1670 100 Minus
3R 32079331 3R 30585289..30585596 1451..1144 1525 99.7 Minus
3R 32079331 3R 30585075..30585220 1597..1452 730 100 Minus
3R 32079331 3R 30581676..30581816 1640..1780 240 78 Plus
Blast to na_te.dros performed on 2014-11-27 08:05:42 has no hits.

BO11629.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:47 Download gff for BO11629.complete
Subject Subject Range Query Range Percent Splice Strand
CG9717-RA 1..1917 17..1933 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:21 Download gff for BO11629.complete
Subject Subject Range Query Range Percent Splice Strand
CG9717-RA 232..2145 17..1932 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:55 Download gff for BO11629.complete
Subject Subject Range Query Range Percent Splice Strand
CG9717-RA 235..2148 17..1932 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:49 Download gff for BO11629.complete
Subject Subject Range Query Range Percent Splice Strand
CG9717-RA 232..2145 17..1930 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:50 Download gff for BO11629.complete
Subject Subject Range Query Range Percent Splice Strand
CG9717-RA 235..2148 17..1932 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:50 Download gff for BO11629.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30584548..30584883 1598..1932 99 <- Minus
3R 30585075..30585220 1452..1597 100 <- Minus
3R 30585289..30585591 1149..1451 100 <- Minus
3R 30585937..30587068 17..1148 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:55 Download gff for BO11629.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26410270..26410605 1598..1932 99 <- Minus
arm_3R 26410797..26410942 1452..1597 100 <- Minus
arm_3R 26411011..26411313 1149..1451 100 <- Minus
arm_3R 26411659..26412790 17..1148 100   Minus

BO11629.pep Sequence

Translation from 16 to 1948

> BO11629.pep
MSQRADSGHTNSGFNGGSEVSLDIPTNTLYHTSRDCIVQEEQGPDESCLE
GTQSCCSNLWSNIFRKKTLYKRFPILVWLPQYKKDYIFGDIVAGISVALT
VIPQALAYAGIAGLDLQYGLYACFLGCFIYIFIGSSKDVPIGPTAISALL
SFQIAGGSWQIATLLTFLTGLIEILMGVFRLGFLIDFVSGPVGAGFTSAV
SLIIFSSQMKDFLGIKTSGNTFLQVWISIVNDIHNISWPDFILGIVCITL
LLSLRALASCTLGPKEGKTTAQKLLTGIFWTIGTARNALLVCGTAGLGYW
LFVNGKENLVKTVGFVPKGLPSFQPPPFHMDAVVNETTGEVLQEAQSFWD
MVSTLGSGLIVVPLIALLETMAVVQAFADGKPTDATQELIASGVCNVANS
FVQGLRSNGGIARGAILNASGVRTQLSNLYTSVIVIIALLYLTPCFYYIP
KAALASIIIAAVIFMVQYRVIKPMWHSKKTDLIPGLGAFFACLVLPLQLG
ILVGIGINVVFILYQAARPKLRIETLATTTGLKYLMLTPDRCLIFPSMEF
VRKVINKQGQKSTLPVVIDCTHIYGADFTAAKVISTMVMDFKLREQPLFF
YNLQPRVAQVFEGLNKDLVVIYDINTLHAKLAEKSPPIASFLDH

BO11629.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9717-PA 638 CG9717-PA 1..638 1..638 3278 100 Plus
Esp-PB 654 CG7005-PB 56..631 44..622 1665 54.6 Plus
Esp-PA 654 CG7005-PA 56..631 44..622 1665 54.6 Plus
CG9702-PB 676 CG9702-PB 28..650 21..643 1650 51.8 Plus
CG9702-PA 676 CG9702-PA 28..650 21..643 1650 51.8 Plus