Clone Sequence Records
BO11629.3prime Sequence
843 bp (808 high quality bases) assembled on 2006-04-19
> BO11629.3prime
ATGGTCTAGAAAGCTTGCGATCGGGGGCGACTTCTCCGCCAGCTTGGCGT
GCAGGGTGTTAATATCGTATATGACCACCAGATCCTTGTTCAGACCCTCG
AAGACCTGCGCCACTCGCGGCTGCAGGTTGTAGAAGAACAGCGGCTGCTC
CCGCAGCTTAAAGTCCATCACCATGGTGGATATCACCTTGGCGGCCGTGA
AGTCCGCTCCATAGATGTGGGTGCAATCGATGACCACCGGCAGTGTGGAC
TTCTGACCCTGCTTGTTGATCACCTTGCGCACAAACTCCATCGAGGGGAA
GATCAGACAGCGATCGGGAGTTAGCATTAGGTATTTCAGACCAGTAGTTG
TCGCCAGCGTTTCGATGCGCAACTTTGGCCGGGCTGCCTGGTAGAGGATG
AAGACCACATTGATGCCGATGCCCACGAGGATGCCCAGTTGCAGGGGCAG
AACCAGACAGGCGAAAAAGGCACCCAGGCCGGGAATGAGATCGGTTTTTT
TACTGTGCCACATGGGCTTGATCACTCGGTACTGGACCATGAAAATAACC
GCCGCAATAATAATGGAGGCCAGAGCCGCCTTAGGAATGTAGTAAAAGCA
GGGCGTGAGGTACAACAGGGCAATAATCACTATCACGCTGGTGTAGAGAT
TGGACAGCTGGGTCCTCACTCCACTGGCATTTAAGATGGCTCCCCTGGCG
ATGCCGCCATTGCTCCGAAGACCCTGGACAAAGGAGTTGGCCACGTTGCA
CACTCCAGAGGCTATCAGCTCCTGCGTGGCATCTGTGGGTTTGCCATCAG
CGAAAGCCTGAACAACGGCCATAGTTTCCAGAAGAGCAATCAA
BO11629.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9717-PA | 1917 | CG9717-RA | 1090..1914 | 843..19 | 4125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:46:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9717-RA | 2679 | CG9717-RA | 1324..2148 | 843..19 | 4125 | 100 | Minus |
CG9702-RB | 2111 | CG9702-RB | 1390..1810 | 589..169 | 295 | 72.2 | Minus |
CG9702-RA | 2318 | CG9702-RA | 1597..2017 | 589..169 | 295 | 72.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:46:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30584551..30584884 | 19..352 | 1670 | 100 | Plus |
3R | 32079331 | 3R | 30585289..30585596 | 498..805 | 1525 | 99.7 | Plus |
3R | 32079331 | 3R | 30585075..30585220 | 352..497 | 730 | 100 | Plus |
3R | 32079331 | 3R | 30581676..30581816 | 309..169 | 240 | 78 | Minus |
3R | 32079331 | 3R | 30585933..30585979 | 797..843 | 220 | 97.9 | Plus |
Blast to na_te.dros performed on 2015-02-09 03:46:38 has no hits.
BO11629.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:58 Download gff for
BO11629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-PA | 1092..1917 | 16..841 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:48 Download gff for
BO11629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-PA | 1092..1917 | 16..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:58:11 Download gff for
BO11629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-RA | 1326..2148 | 19..841 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:28:58 Download gff for
BO11629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-RA | 1326..2148 | 19..841 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:28:58 Download gff for
BO11629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30584551..30584883 | 19..351 | 100 | <- | Plus |
3R | 30585075..30585220 | 352..497 | 100 | <- | Plus |
3R | 30585289..30585591 | 498..800 | 100 | <- | Plus |
3R | 30585937..30585977 | 801..841 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:58:11 Download gff for
BO11629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26410797..26410942 | 352..497 | 100 | <- | Plus |
arm_3R | 26411011..26411313 | 498..800 | 100 | <- | Plus |
arm_3R | 26411659..26411699 | 801..841 | 100 | | Plus |
arm_3R | 26410273..26410605 | 19..351 | 100 | <- | Plus |
BO11629.5prime Sequence
805 bp (777 high quality bases) assembled on 2006-04-19
> BO11629.5prime
GAAGTTATCAGTCGACATGAGCCAAAGAGCTGACAGCGGTCACACGAATA
GTGGCTTCAATGGTGGATCCGAGGTGTCCTTGGACATACCCACCAACACG
CTGTACCACACCTCGCGCGACTGCATTGTGCAGGAGGAGCAGGGTCCCGA
TGAGAGCTGCCTGGAGGGAACTCAAAGCTGTTGCTCAAACCTCTGGTCCA
ACATCTTCAGGAAGAAAACGCTGTACAAGCGATTCCCCATCCTGGTGTGG
CTGCCCCAGTACAAAAAGGATTATATTTTCGGTGACATAGTGGCGGGCAT
TTCGGTGGCCCTGACGGTGATACCCCAGGCCCTGGCCTATGCCGGAATAG
CAGGACTGGATCTGCAGTACGGCCTGTACGCCTGCTTCCTGGGCTGCTTC
ATATACATATTTATTGGGTCCAGTAAGGATGTGCCTATTGGACCTACGGC
CATATCAGCACTGCTGTCCTTTCAAATCGCTGGAGGCAGTTGGCAGATAG
CCACCTTGCTAACCTTCCTCACAGGTCTCATTGAGATCCTGATGGGAGTT
TTCCGGCTGGGATTTCTCATCGATTTCGTTTCTGGTCCCGTGGGAGCGGG
ATTCACGAGTGCCGTGTCCTTGATCATCTTCAGCTCCCAGATGAAGGACT
TCTTGGGCATCAAAACAAGTGGCAACACCTTCCTGCAAGTGTGGATTAGC
ATTGTGAACGATATACACAACATCAGCTGGCCGGACTTCATCTTGGGAAT
CGTCTGCATTACTCTGCTCCTGAGCCTGAGAGCCCTGGCCAGTTGTACCC
TGGGT
BO11629.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9717-PA | 1917 | CG9717-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9717-RA | 2679 | CG9717-RA | 235..1023 | 17..805 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30586280..30587068 | 805..17 | 3945 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:51:22 has no hits.
BO11629.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:11:59 Download gff for
BO11629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:49 Download gff for
BO11629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:02:02 Download gff for
BO11629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-RA | 235..1023 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:34 Download gff for
BO11629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-RA | 235..1023 | 17..805 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:34 Download gff for
BO11629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30586280..30587068 | 17..805 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:02:02 Download gff for
BO11629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26412002..26412790 | 17..805 | 100 | | Minus |
BO11629.complete Sequence
1948 bp assembled on 2008-01-17
GenBank Submission: FJ632134
> BO11629.complete
GAAGTTATCAGTCGACATGAGCCAAAGAGCTGACAGCGGTCACACGAATA
GTGGCTTCAATGGTGGATCCGAGGTGTCCTTGGACATACCCACCAACACG
CTGTACCACACCTCGCGCGACTGCATTGTGCAGGAGGAGCAGGGTCCCGA
TGAGAGCTGCCTGGAGGGAACTCAAAGCTGTTGCTCAAACCTCTGGTCCA
ACATCTTCAGGAAGAAAACGCTGTACAAGCGATTCCCCATCCTGGTGTGG
CTGCCCCAGTACAAAAAGGATTATATTTTCGGTGACATAGTGGCGGGCAT
TTCGGTGGCCCTGACGGTGATACCCCAGGCCCTGGCCTATGCCGGAATAG
CAGGACTGGATCTGCAGTACGGCCTGTACGCCTGCTTCCTGGGCTGCTTC
ATATACATATTTATTGGGTCCAGTAAGGATGTGCCTATTGGACCTACGGC
CATATCAGCACTGCTGTCCTTTCAAATCGCTGGAGGCAGTTGGCAGATAG
CCACCTTGCTAACCTTCCTCACAGGTCTCATTGAGATCCTGATGGGAGTT
TTCCGGCTGGGATTTCTCATCGATTTCGTTTCTGGTCCCGTGGGAGCGGG
ATTCACGAGTGCCGTGTCCTTGATCATCTTCAGCTCCCAGATGAAGGACT
TCTTGGGCATCAAAACAAGTGGCAACACCTTCCTGCAAGTGTGGATTAGC
ATTGTGAACGATATACACAACATCAGCTGGCCGGACTTCATCTTGGGAAT
CGTCTGCATTACTCTGCTCCTGAGCCTGAGAGCCCTGGCCAGTTGTACCC
TGGGTCCCAAGGAGGGAAAAACCACAGCGCAAAAGCTTCTGACCGGCATT
TTCTGGACCATCGGAACTGCCCGCAATGCCCTGCTGGTCTGTGGAACTGC
TGGCCTGGGTTACTGGTTGTTTGTCAACGGCAAGGAGAATCTCGTGAAGA
CAGTTGGCTTTGTGCCCAAGGGATTGCCCTCCTTTCAGCCACCACCCTTC
CACATGGATGCCGTTGTCAACGAAACCACAGGAGAAGTCCTTCAGGAGGC
CCAGAGCTTCTGGGACATGGTCAGCACCCTGGGATCTGGGCTCATTGTGG
TTCCATTGATTGCTCTTCTGGAAACTATGGCCGTTGTTCAGGCTTTCGCT
GATGGCAAACCCACAGATGCCACGCAGGAGCTGATAGCCTCTGGAGTGTG
CAACGTGGCCAACTCCTTTGTCCAGGGTCTTCGGAGCAATGGCGGCATCG
CCAGGGGAGCCATCTTAAATGCCAGTGGAGTGAGGACCCAGCTGTCCAAT
CTCTACACCAGCGTGATAGTGATTATTGCCCTGTTGTACCTCACGCCCTG
CTTTTACTACATTCCTAAGGCGGCTCTGGCCTCCATTATTATTGCGGCGG
TTATTTTCATGGTCCAGTACCGAGTGATCAAGCCCATGTGGCACAGTAAA
AAAACCGATCTCATTCCCGGCCTGGGTGCCTTTTTCGCCTGTCTGGTTCT
GCCCCTGCAACTGGGCATCCTCGTGGGCATCGGCATCAATGTGGTCTTCA
TCCTCTACCAGGCAGCCCGGCCAAAGTTGCGCATCGAAACGCTGGCGACA
ACTACTGGTCTGAAATACCTAATGCTAACTCCCGATCGCTGTCTGATCTT
CCCCTCGATGGAGTTTGTGCGCAAGGTGATCAACAAGCAGGGTCAGAAGT
CCACACTGCCGGTGGTCATCGATTGCACCCACATCTATGGAGCGGACTTC
ACGGCCGCCAAGGTGATATCCACCATGGTGATGGACTTTAAGCTGCGGGA
GCAGCCGCTGTTCTTCTACAACCTGCAGCCGCGAGTGGCGCAGGTCTTCG
AGGGTCTGAACAAGGATCTGGTGGTCATATACGATATTAACACCCTGCAC
GCCAAGCTGGCGGAGAAGTCGCCCCCGATCGCAAGCTTTCTAGACCAT
BO11629.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:05:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9717-RA | 1917 | CG9717-PA | 1..1914 | 17..1930 | 9570 | 100 | Plus |
CG9702-RB | 2031 | CG9702-PB | 1365..1785 | 1360..1780 | 245 | 70.5 | Plus |
CG9702-RA | 2031 | CG9702-PA | 1365..1785 | 1360..1780 | 245 | 70.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9717-RA | 2679 | CG9717-RA | 235..2148 | 17..1930 | 9570 | 100 | Plus |
CG9702-RB | 2111 | CG9702-RB | 1390..1810 | 1360..1780 | 245 | 70.5 | Plus |
CG9702-RA | 2318 | CG9702-RA | 1597..2017 | 1360..1780 | 245 | 70.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30585933..30587068 | 1152..17 | 5665 | 99.9 | Minus |
3R | 32079331 | 3R | 30584551..30584884 | 1930..1597 | 1670 | 100 | Minus |
3R | 32079331 | 3R | 30585289..30585596 | 1451..1144 | 1525 | 99.7 | Minus |
3R | 32079331 | 3R | 30585075..30585220 | 1597..1452 | 730 | 100 | Minus |
3R | 32079331 | 3R | 30581676..30581816 | 1640..1780 | 240 | 78 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:05:42 has no hits.
BO11629.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:47 Download gff for
BO11629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-RA | 1..1917 | 17..1933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:21 Download gff for
BO11629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-RA | 232..2145 | 17..1932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:55 Download gff for
BO11629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-RA | 235..2148 | 17..1932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:49 Download gff for
BO11629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-RA | 232..2145 | 17..1930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:50 Download gff for
BO11629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9717-RA | 235..2148 | 17..1932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:50 Download gff for
BO11629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30584548..30584883 | 1598..1932 | 99 | <- | Minus |
3R | 30585075..30585220 | 1452..1597 | 100 | <- | Minus |
3R | 30585289..30585591 | 1149..1451 | 100 | <- | Minus |
3R | 30585937..30587068 | 17..1148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:55 Download gff for
BO11629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26410270..26410605 | 1598..1932 | 99 | <- | Minus |
arm_3R | 26410797..26410942 | 1452..1597 | 100 | <- | Minus |
arm_3R | 26411011..26411313 | 1149..1451 | 100 | <- | Minus |
arm_3R | 26411659..26412790 | 17..1148 | 100 | | Minus |
BO11629.pep Sequence
Translation from 16 to 1948
> BO11629.pep
MSQRADSGHTNSGFNGGSEVSLDIPTNTLYHTSRDCIVQEEQGPDESCLE
GTQSCCSNLWSNIFRKKTLYKRFPILVWLPQYKKDYIFGDIVAGISVALT
VIPQALAYAGIAGLDLQYGLYACFLGCFIYIFIGSSKDVPIGPTAISALL
SFQIAGGSWQIATLLTFLTGLIEILMGVFRLGFLIDFVSGPVGAGFTSAV
SLIIFSSQMKDFLGIKTSGNTFLQVWISIVNDIHNISWPDFILGIVCITL
LLSLRALASCTLGPKEGKTTAQKLLTGIFWTIGTARNALLVCGTAGLGYW
LFVNGKENLVKTVGFVPKGLPSFQPPPFHMDAVVNETTGEVLQEAQSFWD
MVSTLGSGLIVVPLIALLETMAVVQAFADGKPTDATQELIASGVCNVANS
FVQGLRSNGGIARGAILNASGVRTQLSNLYTSVIVIIALLYLTPCFYYIP
KAALASIIIAAVIFMVQYRVIKPMWHSKKTDLIPGLGAFFACLVLPLQLG
ILVGIGINVVFILYQAARPKLRIETLATTTGLKYLMLTPDRCLIFPSMEF
VRKVINKQGQKSTLPVVIDCTHIYGADFTAAKVISTMVMDFKLREQPLFF
YNLQPRVAQVFEGLNKDLVVIYDINTLHAKLAEKSPPIASFLDH
BO11629.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9717-PA | 638 | CG9717-PA | 1..638 | 1..638 | 3278 | 100 | Plus |
Esp-PB | 654 | CG7005-PB | 56..631 | 44..622 | 1665 | 54.6 | Plus |
Esp-PA | 654 | CG7005-PA | 56..631 | 44..622 | 1665 | 54.6 | Plus |
CG9702-PB | 676 | CG9702-PB | 28..650 | 21..643 | 1650 | 51.8 | Plus |
CG9702-PA | 676 | CG9702-PA | 28..650 | 21..643 | 1650 | 51.8 | Plus |