Clone Sequence Records
BO11633.5prime Sequence
374 bp (373 high quality bases) assembled on 2006-04-19
> BO11633.5prime
GAAGTTATCAGTCGACATGCGTTCCCTGATTCTTGTCGCTCTTTTGGCCT
TCTTGGCTGTTGGCTTTGTGGCTGCCCGTCCAGCTGAGGATGAGGAGTCC
TCCGCTGCCGTGGTTGAGAATGCCGATGAGGATTCGACTAGCAATGATGC
GGAGAGCACCGAAGCCACTGATGCGGAGGAATCTTCTGATGATGAGGAGA
CGACTGAAGAGTCTGGTGATGCCGCTGACGAATCCAGCGATGATGCCGAT
GAGGATGAGACAACCACTGCAGCTTCGGCCAAGAAGCAGATCCGTCCCTT
CTGGCCCAGGTTCGGAGGTCATGGTCCAGTTGTGATCAGGCGTCACCCTA
GTCTTGTCGCAAGCTTTCTAGACC
BO11633.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12310-PA | 345 | CG12310-RA | 1..342 | 17..358 | 1710 | 100 | Plus |
| CG13461-PA | 414 | CG13461-RA | 22..87 | 38..103 | 180 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:18:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12310-RA | 544 | CG12310-RA | 42..383 | 17..358 | 1710 | 100 | Plus |
| CG13461-RA | 560 | CG13461-RA | 16..102 | 17..103 | 255 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:18:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15050424..15050765 | 358..17 | 1710 | 100 | Minus |
| 3L | 28110227 | 3L | 15052389..15052475 | 103..17 | 255 | 86.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:18:41 has no hits.
BO11633.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:05 Download gff for
BO11633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-PA | 1..345 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:59 Download gff for
BO11633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-PA | 1..345 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:38:16 Download gff for
BO11633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-RA | 37..383 | 12..358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:28 Download gff for
BO11633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-RA | 37..383 | 12..358 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:28 Download gff for
BO11633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15050424..15050770 | 12..358 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:38:16 Download gff for
BO11633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15043524..15043870 | 12..358 | 99 | | Minus |
BO11633.3prime Sequence
374 bp (373 high quality bases) assembled on 2006-04-19
> BO11633.3prime
ATGGTCTAGAAAGCTTGCGACAAGACTAGGGTGACGCCTGATCACAACTG
GACCATGACCTCCGAACCTGGGCCAGAAGGGACGGATCTGCTTCTTGGCC
GAAGCTGCAGTGGTTGTCTCATCCTCATCGGCATCATCGCTGGATTCGTC
AGCGGCATCACCAGACTCTTCAGTCGTCTCCTCATCATCAGAAGATTCCT
CCGCATCAGTGGCTTCGGTGCTCTCCGCATCATTGCTAGTCGAATCCTCA
TCGGCATTCTCAACCACGGCAGCGGAGGACTCCTCATCCTCAGCTGGACG
GGCAGCCACAAAGCCAACAGCCAAGAAGGCCAAAAGAGCGACAAGAATCA
GGGAACGCATGTCGACTGATAACT
BO11633.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12310-PA | 345 | CG12310-RA | 1..342 | 360..19 | 1710 | 100 | Minus |
| CG13461-PA | 414 | CG13461-RA | 22..87 | 339..274 | 180 | 90.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12310-RA | 544 | CG12310-RA | 42..383 | 360..19 | 1710 | 100 | Minus |
| CG13461-RA | 560 | CG13461-RA | 16..102 | 360..274 | 255 | 86.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15050424..15050765 | 19..360 | 1710 | 100 | Plus |
| 3L | 28110227 | 3L | 15052389..15052475 | 274..360 | 255 | 86.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:19:26 has no hits.
BO11633.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:04 Download gff for
BO11633.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-PA | 1..345 | 18..360 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:37:57 Download gff for
BO11633.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-PA | 1..345 | 18..360 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:26:03 Download gff for
BO11633.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-RA | 37..383 | 19..365 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:56:20 Download gff for
BO11633.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-RA | 37..383 | 19..365 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:56:20 Download gff for
BO11633.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15050424..15050770 | 19..365 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:26:03 Download gff for
BO11633.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15043524..15043870 | 19..365 | 99 | | Plus |
BO11633.complete Sequence
376 bp assembled on 2006-10-11
GenBank Submission: FJ632136
> BO11633.complete
GAAGTTATCAGTCGACATGCGTTCCCTGATTCTTGTCGCTCTTTTGGCCT
TCTTGGCTGTTGGCTTTGTGGCTGCCCGTCCAGCTGAGGATGAGGAGTCC
TCCGCTGCCGTGGTTGAGAATGCCGATGAGGATTCGACTAGCAATGATGC
GGAGAGCACCGAAGCCACTGATGCGGAGGAATCTTCTGATGATGAGGAGA
CGACTGAAGAGTCTGGTGATGCCGCTGACGAATCCAGCGATGATGCCGAT
GAGGATGAGACAACCACTGCAGCTTCGGCCAAGAAGCAGATCCGTCCCTT
CTGGCCCAGGTTCGGAGGTCATGGTCCAGTTGTGATCAGGCGTCACCCTA
GTCTTGTCGCAAGCTTTCTAGACCAT
BO11633.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:51:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12310-RA | 345 | CG12310-PA | 1..342 | 17..358 | 1710 | 100 | Plus |
| CG13461-RA | 414 | CG13461-PA | 1..87 | 17..103 | 255 | 86.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12310-RA | 544 | CG12310-RA | 42..383 | 17..358 | 1710 | 100 | Plus |
| CG13461-RA | 560 | CG13461-RA | 16..102 | 17..103 | 255 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15050424..15050765 | 358..17 | 1710 | 100 | Minus |
| 3L | 28110227 | 3L | 15052389..15052475 | 103..17 | 255 | 86.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:51:37 has no hits.
BO11633.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:11 Download gff for
BO11633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-RA | 1..345 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:28 Download gff for
BO11633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-RA | 36..382 | 12..358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:18 Download gff for
BO11633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-RA | 42..383 | 17..360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:12 Download gff for
BO11633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-RA | 36..382 | 12..358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:47 Download gff for
BO11633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12310-RA | 42..383 | 17..360 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:47 Download gff for
BO11633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15050422..15050765 | 17..360 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:18 Download gff for
BO11633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15043522..15043865 | 17..360 | 99 | | Minus |
BO11633.pep Sequence
Translation from 16 to 376
> BO11633.pep
MRSLILVALLAFLAVGFVAARPAEDEESSAAVVENADEDSTSNDAESTEA
TDAEESSDDEETTEESGDAADESSDDADEDETTTAASAKKQIRPFWPRFG
GHGPVVIRRHPSLVASFLDH
BO11633.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12310-PA | 114 | CG12310-PA | 1..114 | 1..114 | 568 | 100 | Plus |
| CG13461-PA | 137 | CG13461-PA | 1..133 | 1..111 | 192 | 38 | Plus |
