Clone Sequence Records
BO11636.3prime Sequence
581 bp (580 high quality bases) assembled on 2006-04-19
> BO11636.3prime
ATGGTCTAGAAAGCTTGCCCGTTGGTTGGCCATATTCTGGTGTATAGCGT
TGTTGATCATGGTGTTCCGCATGAATAGGTAGTGATCGTCCATATTGCAC
TGCAGCTCCATCATGTCCTCGTGCTCCGCCTGAAATCGGATGGCCGCGTT
TGTGAAAGCCAACGAGCTTCGCACGAAGTTTTGCAAATTGGGTCCCTGAT
CTAGGTAACGCTGCTGCTCCTTGTTTGGCTTGAAGCTAACCTTGCGATTG
TCCGTGTCCAGTGCCGCATGCATTACAAAGTCGAAGAACTTTTGCTGCTC
CTTCTGGGCGCGCTCCTTGTACTGCTGCACCTCGTCCTCCTGACAGCTAG
GATCCCAGATATCGTCCAGGTCAATGTTAAACAAAGTGCTTGCTTCATAG
CGACGCGGTTTCAAAGTGGCCTCCAGTTGGGCCGGCACGTCCTTGAGATC
GATGTCGGAGAGATCACCGCTCGATAGATCGACGGCACTCGTGTTGCCCA
CGTATTCCAGTACGTCACTGCGGCGTACGAATTTCATTAATTTTTCTGGA
CTTTCGGCTGGCTCCATGTCGACTGATAACT
BO11636.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1558-PA | 552 | l(1)G0237-RA | 1..549 | 567..19 | 2745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:46:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kmn1-RA | 1002 | CG1558-RA | 45..593 | 567..19 | 2745 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:46:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11571792..11572132 | 19..359 | 1705 | 100 | Plus |
| X | 23542271 | X | 11572191..11572398 | 360..567 | 1040 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 03:46:51 has no hits.
BO11636.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:10 Download gff for
BO11636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1558-PA | 1..552 | 16..567 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:38:05 Download gff for
BO11636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1558-PA | 1..552 | 16..567 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:58:13 Download gff for
BO11636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kmn1-RA | 41..600 | 12..571 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:29:00 Download gff for
BO11636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kmn1-RA | 41..600 | 12..571 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:29:00 Download gff for
BO11636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11571785..11572132 | 12..359 | 98 | <- | Plus |
| X | 11572191..11572400 | 360..571 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:58:13 Download gff for
BO11636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11465818..11466165 | 12..359 | 98 | <- | Plus |
| arm_X | 11466224..11466433 | 360..571 | 99 | | Plus |
BO11636.5prime Sequence
581 bp (580 high quality bases) assembled on 2006-04-19
> BO11636.5prime
GAAGTTATCAGTCGACATGGAGCCAGCCGAAAGTCCAGAAAAATTAATGA
AATTCGTACGCCGCAGTGACGTACTGGAATACGTGGGCAACACGAGTGCC
GTCGATCTATCGAGCGGTGATCTCTCCGACATCGATCTCAAGGACGTGCC
GGCCCAACTGGAGGCCACTTTGAAACCGCGTCGCTATGAAGCAAGCACTT
TGTTTAACATTGACCTGGACGATATCTGGGATCCTAGCTGTCAGGAGGAC
GAGGTGCAGCAGTACAAGGAGCGCGCCCAGAAGGAGCAGCAAAAGTTCTT
CGACTTTGTAATGCATGCGGCACTGGACACGGACAATCGCAAGGTTAGCT
TCAAGCCAAACAAGGAGCAGCAGCGTTACCTAGATCAGGGACCCAATTTG
CAAAACTTCGTGCGAAGCTCGTTGGCTTTCACAAACGCGGCCATCCGATT
TCAGGCGGAGCACGAGGACATGATGGAGCTGCAGTGCAATATGGACGATC
ACTACCTATTCATGCGGAACACCATGATCAACAACGCTATACACCAGAAT
ATGGCCAACCAACGGGCAAGCTTTCTAGACC
BO11636.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1558-PA | 552 | l(1)G0237-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kmn1-RA | 1002 | CG1558-RA | 45..593 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11571792..11572132 | 565..225 | 1705 | 100 | Minus |
| X | 23542271 | X | 11572191..11572398 | 224..17 | 1040 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:04:12 has no hits.
BO11636.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:11 Download gff for
BO11636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1558-PA | 1..552 | 17..568 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:38:07 Download gff for
BO11636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1558-PA | 1..552 | 17..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:54:02 Download gff for
BO11636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kmn1-RA | 41..600 | 13..572 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:37:03 Download gff for
BO11636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kmn1-RA | 41..600 | 13..572 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:37:03 Download gff for
BO11636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11571785..11572132 | 225..572 | 98 | <- | Minus |
| X | 11572191..11572400 | 13..224 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:54:02 Download gff for
BO11636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11465818..11466165 | 225..572 | 98 | <- | Minus |
| arm_X | 11466224..11466433 | 13..224 | 99 | | Minus |
BO11636.complete Sequence
583 bp assembled on 2006-10-11
GenBank Submission: FJ632137
> BO11636.complete
GAAGTTATCAGTCGACATGGAGCCAGCCGAAAGTCCAGAAAAATTAATGA
AATTCGTACGCCGCAGTGACGTACTGGAATACGTGGGCAACACGAGTGCC
GTCGATCTATCGAGCGGTGATCTCTCCGACATCGATCTCAAGGACGTGCC
GGCCCAACTGGAGGCCACTTTGAAACCGCGTCGCTATGAAGCAAGCACTT
TGTTTAACATTGACCTGGACGATATCTGGGATCCTAGCTGTCAGGAGGAC
GAGGTGCAGCAGTACAAGGAGCGCGCCCAGAAGGAGCAGCAAAAGTTCTT
CGACTTTGTAATGCATGCGGCACTGGACACGGACAATCGCAAGGTTAGCT
TCAAGCCAAACAAGGAGCAGCAGCGTTACCTAGATCAGGGACCCAATTTG
CAAAACTTCGTGCGAAGCTCGTTGGCTTTCACAAACGCGGCCATCCGATT
TCAGGCGGAGCACGAGGACATGATGGAGCTGCAGTGCAATATGGACGATC
ACTACCTATTCATGCGGAACACCATGATCAACAACGCTATACACCAGAAT
ATGGCCAACCAACGGGCAAGCTTTCTAGACCAT
BO11636.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kmn1-RA | 552 | CG1558-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kmn1-RA | 1002 | CG1558-RA | 45..593 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11571792..11572132 | 565..225 | 1705 | 100 | Minus |
| X | 23542271 | X | 11572191..11572398 | 224..17 | 1040 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:49:42 has no hits.
BO11636.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:29 Download gff for
BO11636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kmn1-RA | 1..552 | 17..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:35 Download gff for
BO11636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kmn1-RA | 41..600 | 13..572 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:47 Download gff for
BO11636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kmn1-RA | 45..593 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:30 Download gff for
BO11636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kmn1-RA | 41..600 | 13..572 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:32 Download gff for
BO11636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kmn1-RA | 45..593 | 17..567 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:32 Download gff for
BO11636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11571788..11572132 | 225..567 | 99 | <- | Minus |
| X | 11572191..11572398 | 17..224 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:47 Download gff for
BO11636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11465821..11466165 | 225..567 | 99 | <- | Minus |
| arm_X | 11466224..11466431 | 17..224 | 100 | | Minus |
BO11636.pep Sequence
Translation from 16 to 583
> BO11636.pep
MEPAESPEKLMKFVRRSDVLEYVGNTSAVDLSSGDLSDIDLKDVPAQLEA
TLKPRRYEASTLFNIDLDDIWDPSCQEDEVQQYKERAQKEQQKFFDFVMH
AALDTDNRKVSFKPNKEQQRYLDQGPNLQNFVRSSLAFTNAAIRFQAEHE
DMMELQCNMDDHYLFMRNTMINNAIHQNMANQRASFLDH
BO11636.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kmn1-PA | 183 | CG1558-PA | 1..183 | 1..183 | 954 | 100 | Plus |
