Clone BO11640 Report

Search the DGRC for BO11640

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:40
Vector:pDNR-Dual
Associated Gene/Transcriptnes-RA
Protein status:BO11640.pep: validated full length
Sequenced Size:1525

Clone Sequence Records

BO11640.3prime Sequence

858 bp (771 high quality bases) assembled on 2006-04-19

> BO11640.3prime
ATGGTCTAGAAAGCTTGCCTCAGACTTCTTATCTTCTGGTTTCTTTTCCT
CTACGAGTTTGTCCGTGTTGCTGTCCTGCAACTTCTGATCCTCTCCAGCT
AGTTTCCGGGAACTGCTCCGGAAAAAGTGATTGAAGGTATGATAGAAGGC
AGCCCAGAGTACTAGGAAAGTGAATCCATAGTAGCTGACCGCTCCGTACA
CCACGATCCAGCGCTCGTATTTCAGAAACACAAATGCGGTCAGGCACCAG
CCCATGTACACAACGTTGTACGACTTGAGGGTGATGAAATAAAGCAGCTT
GTAGATGTCCGAGTTGTTCAGAATGTGGCCCCACTGGGGTAACACCACTT
TGGTGTAGAAGCGGGTTATTTGTTTTTCGGTGCTCACAACCATGTATTCC
ATGAGGAATGTCATGTAGTAACCGCTGTGGTATCCGTGCCAGACCGCCAA
GAAACCCAAAGCCGCGCCATAGCTGATTGTGCGGTTGTTGAGGAACTTAA
GTCGCTTGTAGATATACTGTCCAACCCATTGGTTCGTGTTTACATTGAAG
CTTTGAACGTAGTGCTCCATGGTGTTCCCAGTCTCCAGCAGCTTTAGCTT
CACATTGCTGCAGCCCGACCAATCGGGCTGTCCGTTCTTGTCCTCGCCCT
TGTAGGTCAGACCAATGCAAATAAGGGCGCCCTCGGTGAGCAGCCAGCAG
GATATGTACTTGTACAGACTGAATTTGGCCCAGAAGCCGAGTAAATAAAT
CCTCTTGACGAATGAAACTTGCGCAAACTCCGGAGTGAGGAAGTACGAAT
CGGGCAGATATCTCAATCCCACTTGACACACAATCAGATAGAACGCACCA
GCTCCAAA

BO11640.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9655-PA 1494 nes-RA 652..1491 858..19 4175 99.8 Minus
CG9655-PB 1494 nes-RB 652..1491 858..19 4175 99.8 Minus
CG9655-PC 1494 nes-RC 652..1491 858..19 4175 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
nes-RC 2231 CG9655-RC 790..1629 858..19 4185 99.9 Minus
nes-RB 1668 CG9655-RB 693..1532 858..19 4185 99.9 Minus
nes-RA 2377 CG9655-RA 806..1645 858..19 4185 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19258538..19259026 370..858 2430 99.8 Plus
3L 28110227 3L 19258014..19258364 19..369 1755 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:25:28 has no hits.

BO11640.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:17 Download gff for BO11640.3prime
Subject Subject Range Query Range Percent Splice Strand
nes-PA 655..1494 18..855 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:38:14 Download gff for BO11640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9655-PC 655..1494 18..855 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:56:54 Download gff for BO11640.3prime
Subject Subject Range Query Range Percent Splice Strand
nes-RA 809..1652 11..855 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:40:31 Download gff for BO11640.3prime
Subject Subject Range Query Range Percent Splice Strand
nes-RA 809..1652 11..855 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:40:31 Download gff for BO11640.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19258007..19258364 11..369 98 <- Plus
3L 19258538..19259023 370..855 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:56:54 Download gff for BO11640.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19251107..19251464 11..369 98 <- Plus
arm_3L 19251638..19252123 370..855 99   Plus

BO11640.5prime Sequence

877 bp (795 high quality bases) assembled on 2006-04-19

> BO11640.5prime
GAAGTTATCAGTCGACATGGCGGAATTCGAGGAGGACTTGCCCCACAATG
GCCTGATGGACGGGATCGCCTCGGGAGTGGGCGTTCCCGTGGAGGCACTC
CGGCTGCTACTCACCATTCTGGCAGGTTATCCGGTGGCAGCATTATATCA
AAAATTTATTTCTGTTATTGCCGATAAAACAGTGCATCACATGTTCTTTG
CTGGATGCGGCGCTGGATTGTGTTACTTTAACTATGGGCTCGACACATAT
CACTCACTGATAGCCATCCTAACCACCTATTTCCTGGTACTCCTCCTGCG
AAAGAAGACGCAGATATTTCTGGCCATCAACTTCGTTTTCCATATGAGCT
ACCTGCTGCTGGGATATTTCTACACGTCCAGCAATGATTACGATATTCTG
TGGACGATGCCTCACTGCATTTTGGTTCTACGAATGATTGGCTATGGTTT
TGACATCACCGACGGCCTGAAAGAGGAGTCGGAATTGTCTAAGGACCAAA
AGGAAACTGCGCTGAAGAAACCGCCCTCTCTGCTGGAGCTCCTGGCCTTT
TCCTACTTCCCCAGTGGATTTTTGGTTGGACCGCAGTTCCCATTCCGCCG
TTACAAGGCCTTTGTCGATGGCGAATTCCGTCAGCACGAAGGAAATGTGG
AAGCTGGCGTTCGTCGCTTTGGAGCTGGTGCGTTCTATCTGATTGTGTGT
CAAGTGGGATTGAGATATCTGCCCGATTCGTACTTCCTCACTCCGGAGTT
TGCGCAAGTTTCATTCGTCAAGAGGATTTATTTACTCGGCTTCTGGGCCA
AATTCAGTCTGTACAAGTACATATCCTGCTGGCTGCTCACCGAGGGCGCC
CTTATTTGCATTGGTCTGACCTACAAG

BO11640.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9655-PA 1494 nes-RA 1..861 17..877 4280 99.8 Plus
CG9655-PB 1494 nes-RB 1..861 17..877 4280 99.8 Plus
CG9655-PC 1494 nes-RC 1..861 17..877 4280 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
nes-RC 2231 CG9655-RC 138..999 16..877 4295 99.9 Plus
nes-RB 1668 CG9655-RB 41..902 16..877 4295 99.9 Plus
nes-RA 2377 CG9655-RA 154..1015 16..877 4295 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19258817..19259571 877..123 3760 99.9 Minus
3L 28110227 3L 19260113..19260224 127..16 560 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:08:50 has no hits.

BO11640.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:18 Download gff for BO11640.5prime
Subject Subject Range Query Range Percent Splice Strand
nes-PA 1..861 17..877 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:38:16 Download gff for BO11640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9655-PC 1..861 17..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:51:04 Download gff for BO11640.5prime
Subject Subject Range Query Range Percent Splice Strand
nes-RA 154..1015 16..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:12 Download gff for BO11640.5prime
Subject Subject Range Query Range Percent Splice Strand
nes-RA 154..1015 16..877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:12 Download gff for BO11640.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19258817..19259568 126..877 99 <- Minus
3L 19260115..19260224 16..125 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:51:04 Download gff for BO11640.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19251917..19252668 126..877 99 <- Minus
arm_3L 19253215..19253324 16..125 100   Minus

BO11640.complete Sequence

1525 bp assembled on 2006-10-11

GenBank Submission: FJ632139

> BO11640.complete
GAAGTTATCAGTCGACATGGCGGAATTCGAGGAGGACTTGCCCCACAATG
GCCTGATGGACGGGATCGCCTCGGGAGTGGGCGTTCCCGTGGAGGCACTC
CGGCTGCTACTCACCATTCTGGCAGGTTATCCGGTGGCAGCATTATATCA
AAAATTTATTTCTGTTATTGCCGATAAAACAGTGCATCACATGTTCTTTG
CTGGATGCGGCGCTGGATTGTGTTACTTTAACTATGGGCTCGACACATAT
CACTCACTGATAGCCATCCTAACCACCTATTTCCTGGTACTCCTCCTGCG
AAAGAAGACGCAGATATTTCTGGCCATCAACTTCGTTTTCCATATGAGCT
ACCTGCTGCTGGGATATTTCTACACGTCCAGCAATGATTACGATATTCTG
TGGACGATGCCTCACTGCATTTTGGTTCTACGAATGATTGGCTATGGTTT
TGACATCACCGACGGCCTGAAAGAGGAGTCGGAATTGTCTAAGGACCAAA
AGGAAACTGCGCTGAAGAAACCGCCCTCTCTGCTGGAGCTCCTGGCCTTT
TCCTACTTCCCCAGTGGATTTTTGGTTGGACCGCAGTTCCCATTCCGCCG
TTACAAGGCCTTTGTCGATGGCGAATTCCGTCAGCACGAAGGAAATGTGG
AAGCTGGCGTTCGTCGCTTTGGAGCTGGTGCGTTCTATCTGATTGTGTGT
CAAGTGGGATTGAGATATCTGCCCGATTCGTACTTCCTCACTCCGGAGTT
TGCGCAAGTTTCATTCGTCAAGAGGATTTATTTACTCGGCTTCTGGGCCA
AATTCAGTCTGTACAAGTACATATCCTGCTGGCTGCTCACCGAGGGCGCC
CTTATTTGCATTGGTCTGACCTACAAGGGCGAGGACAAGAACGGACAGCC
CGATTGGTCGGGCTGCAGCAATGTGAAGCTAAAGCTGCTGGAGACTGGGA
ACACCATGGAGCACTACGTTCAAAGCTTCAATGTAAACACGAACCAATGG
GTTGGACAGTATATCTACAAGCGACTTAAGTTCCTCAACAACCGCACAAT
CAGCTATGGCGCGGCTTTGGGTTTCTTGGCGGTCTGGCACGGATACCACA
GCGGTTACTACATGACATTCCTCATGGAATACATGGTTGTGAGCACCGAA
AAACAAATAACCCGCTTCTACACCAAAGTGGTGTTACCCCAGTGGGGCCA
CATTCTGAACAACTCGGACATCTACAAGCTGCTTTATTTCATCACCCTCA
AGTCGTACAACGTTGTGTACATGGGCTGGTGCCTGACCGCATTTGTGTTT
CTGAAATACGAGCGCTGGATCGTGGTGTACGGAGCGGTCAGCTACTATGG
ATTCACTTTCCTAGTACTCTGGGCTGCCTTCTATCATACCTTCAATCACT
TTTTCCGGAGCAGTTCCCGGAAACTAGCTGGAGAGGATCAGAAGTTGCAG
GACAGCAACACGGACAAACTCGTAGAGGAAAAGAAACCAGAAGATAAGAA
GTCTGAGGCAAGCTTTCTAGACCAT

BO11640.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
nes-RC 1494 CG9655-PC 1..1491 17..1507 7440 99.9 Plus
nes-RB 1494 CG9655-PB 1..1491 17..1507 7440 99.9 Plus
nes-RA 1494 CG9655-PA 1..1491 17..1507 7440 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
nes-RC 2231 CG9655-RC 138..1629 16..1507 7445 99.9 Plus
nes-RB 1668 CG9655-RB 41..1532 16..1507 7445 99.9 Plus
nes-RA 2377 CG9655-RA 154..1645 16..1507 7445 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19258538..19259571 1156..123 5155 99.9 Minus
3L 28110227 3L 19258014..19258364 1507..1157 1755 100 Minus
3L 28110227 3L 19260113..19260224 127..16 560 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:52:43 has no hits.

BO11640.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:14 Download gff for BO11640.complete
Subject Subject Range Query Range Percent Splice Strand
nes-RC 1..1494 17..1508 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:23 Download gff for BO11640.complete
Subject Subject Range Query Range Percent Splice Strand
nes-RC 138..1636 16..1515 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:20 Download gff for BO11640.complete
Subject Subject Range Query Range Percent Splice Strand
nes-RA 155..1645 17..1509 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:14 Download gff for BO11640.complete
Subject Subject Range Query Range Percent Splice Strand
nes-RC 138..1636 16..1515 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:34 Download gff for BO11640.complete
Subject Subject Range Query Range Percent Splice Strand
nes-RA 155..1645 17..1509 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:34 Download gff for BO11640.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19258012..19258364 1157..1509 99 <- Minus
3L 19258538..19259568 126..1156 99 <- Minus
3L 19260115..19260223 17..125 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:20 Download gff for BO11640.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19251112..19251464 1157..1509 99 <- Minus
arm_3L 19251638..19252668 126..1156 99 <- Minus
arm_3L 19253215..19253323 17..125 100   Minus

BO11640.pep Sequence

Translation from 16 to 1525

> BO11640.pep
MAEFEEDLPHNGLMDGIASGVGVPVEALRLLLTILAGYPVAALYQKFISV
IADKTVHHMFFAGCGAGLCYFNYGLDTYHSLIAILTTYFLVLLLRKKTQI
FLAINFVFHMSYLLLGYFYTSSNDYDILWTMPHCILVLRMIGYGFDITDG
LKEESELSKDQKETALKKPPSLLELLAFSYFPSGFLVGPQFPFRRYKAFV
DGEFRQHEGNVEAGVRRFGAGAFYLIVCQVGLRYLPDSYFLTPEFAQVSF
VKRIYLLGFWAKFSLYKYISCWLLTEGALICIGLTYKGEDKNGQPDWSGC
SNVKLKLLETGNTMEHYVQSFNVNTNQWVGQYIYKRLKFLNNRTISYGAA
LGFLAVWHGYHSGYYMTFLMEYMVVSTEKQITRFYTKVVLPQWGHILNNS
DIYKLLYFITLKSYNVVYMGWCLTAFVFLKYERWIVVYGAVSYYGFTFLV
LWAAFYHTFNHFFRSSSRKLAGEDQKLQDSNTDKLVEEKKPEDKKSEASF
LDH

BO11640.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
nes-PC 497 CG9655-PC 1..497 1..497 2656 100 Plus
nes-PB 497 CG9655-PB 1..497 1..497 2656 100 Plus
nes-PA 497 CG9655-PA 1..497 1..497 2656 100 Plus
oys-PE 722 CG18445-PE 22..453 17..438 309 24.2 Plus
oys-PB 722 CG18445-PB 22..453 17..438 309 24.2 Plus