Clone BO11643 Report

Search the DGRC for BO11643

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG11131-RA
Protein status:BO11643.pep: validated full length
Sequenced Size:721

Clone Sequence Records

BO11643.3prime Sequence

719 bp (718 high quality bases) assembled on 2006-04-19

> BO11643.3prime
ATGGTCTAGAAAGCTTGCGTGGCGGTAGCGGTAACGCAGACGGCGCACAG
TCTTGTAGCGGTAGCCGTCCTTGGCCAACTCAGTGCCCTCCTCAGCGGAC
TTTGGCTCGGCCTCGGCGGCAGCGGGGGCGGCAGCGGCAGCCTCAGCGGG
GGGCAGGTACTCTCCGTTGGGTGCGGACTCGGCAGCAGCCTCTTCGGCGA
CAGCCTCGCGGCGGTGGCGGCGGAACTTGAGACGGCGCACTGTCTTGTAC
TTGTAGCCATCATCACCAAGAATGGTTTTTAGCTCGGGAGCAAGCTCAAC
CTGCACGGGTGGGAGGTACTCGCCGCTGGGCTCAGCGATTTCGGAGACGT
CGCGGCGGTGGCGAGCACGGAACTTAAGCTTGCGCACCGTTTTGTACCGG
TAGCCGTCGTCGGCAACCTTGGTGTCACCAATGGCGGCGGCATCTACTGG
CGGCAGATATTCCTGGCTAGGTGCGTTTTCCACGGGAGGAAGGTATTCCT
GGTTAGGCACCTCGCGGCGGTGGCGCAGCTTCAGCCGGCGCACGGTCCTG
TACTTATATCCGTTCTCCGAAAGCTGGGCGGCCTCCGCCTCGCCGACGGG
AGGCAGGTACTCGGAGGAAGGCTCCAGTGCAGCAGCGGGATCAGCAGATT
GGGCTGCCGCAAAGGCCACTAGGCAGATGGCAAGGACGGCGGTGAAGAGT
TTCATGTCGACTGATAACT

BO11643.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG11131-PA 690 CG11131-RA 1..687 705..19 3435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11131-RB 1379 CG11131-RB 525..1211 705..19 3435 100 Minus
CG11131-RA 949 CG11131-RA 95..781 705..19 3435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:30:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22899410..22900094 703..19 3425 100 Minus
Blast to na_te.dros performed 2015-02-03 17:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 640..692 667..616 109 69.8 Minus

BO11643.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:22 Download gff for BO11643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11131-PA 1..690 18..705 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:38:23 Download gff for BO11643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11131-PA 1..690 18..705 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:35:39 Download gff for BO11643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11131-RA 90..786 13..710 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:02:22 Download gff for BO11643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11131-RA 90..786 13..710 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:02:22 Download gff for BO11643.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22899400..22900099 13..717 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:35:39 Download gff for BO11643.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22892500..22893199 13..717 98   Minus

BO11643.5prime Sequence

719 bp (718 high quality bases) assembled on 2006-04-19

> BO11643.5prime
GAAGTTATCAGTCGACATGAAACTCTTCACCGCCGTCCTTGCCATCTGCC
TAGTGGCCTTTGCGGCAGCCCAATCTGCTGATCCCGCTGCTGCACTGGAG
CCTTCCTCCGAGTACCTGCCTCCCGTCGGCGAGGCGGAGGCCGCCCAGCT
TTCGGAGAACGGATATAAGTACAGGACCGTGCGCCGGCTGAAGCTGCGCC
ACCGCCGCGAGGTGCCTAACCAGGAATACCTTCCTCCCGTGGAAAACGCA
CCTAGCCAGGAATATCTGCCGCCAGTAGATGCCGCCGCCATTGGTGACAC
CAAGGTTGCCGACGACGGCTACCGGTACAAAACGGTGCGCAAGCTTAAGT
TCCGTGCTCGCCACCGCCGCGACGTCTCCGAAATCGCTGAGCCCAGCGGC
GAGTACCTCCCACCCGTGCAGGTTGAGCTTGCTCCCGAGCTAAAAACCAT
TCTTGGTGATGATGGCTACAAGTACAAGACAGTGCGCCGTCTCAAGTTCC
GCCGCCACCGCCGCGAGGCTGTCGCCGAAGAGGCTGCTGCCGAGTCCGCA
CCCAACGGAGAGTACCTGCCCCCCGCTGAGGCTGCCGCTGCCGCCCCCGC
TGCCGCCGAGGCCGAGCCAAAGTCCGCTGAGGAGGGCACTGAGTTGGCCA
AGGACGGCTACCGCTACAAGACTGTGCGCCGTCTGCGTTACCGCTACCGC
CACGCAAGCTTTCTAGACC

BO11643.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11131-PA 690 CG11131-RA 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11131-RB 1379 CG11131-RB 525..1211 17..703 3435 100 Plus
CG11131-RA 949 CG11131-RA 95..781 17..703 3435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22899410..22900094 19..703 3425 100 Plus
Blast to na_te.dros performed 2015-02-12 17:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 640..692 55..106 109 69.8 Plus

BO11643.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:24 Download gff for BO11643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11131-PA 1..690 17..704 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:38:24 Download gff for BO11643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11131-PA 1..690 17..704 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:31:38 Download gff for BO11643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11131-RA 90..786 12..709 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:46:42 Download gff for BO11643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11131-RA 90..786 12..709 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:46:42 Download gff for BO11643.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22899400..22900099 5..709 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:31:38 Download gff for BO11643.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22892500..22893199 5..709 98   Plus

BO11643.complete Sequence

721 bp assembled on 2006-10-11

GenBank Submission: FJ632141

> BO11643.complete
GAAGTTATCAGTCGACATGAAACTCTTCACCGCCGTCCTTGCCATCTGCC
TAGTGGCCTTTGCGGCAGCCCAATCTGCTGATCCCGCTGCTGCACTGGAG
CCTTCCTCCGAGTACCTGCCTCCCGTCGGCGAGGCGGAGGCCGCCCAGCT
TTCGGAGAACGGATATAAGTACAGGACCGTGCGCCGGCTGAAGCTGCGCC
ACCGCCGCGAGGTGCCTAACCAGGAATACCTTCCTCCCGTGGAAAACGCA
CCTAGCCAGGAATATCTGCCGCCAGTAGATGCCGCCGCCATTGGTGACAC
CAAGGTTGCCGACGACGGCTACCGGTACAAAACGGTGCGCAAGCTTAAGT
TCCGTGCTCGCCACCGCCGCGACGTCTCCGAAATCGCTGAGCCCAGCGGC
GAGTACCTCCCACCCGTGCAGGTTGAGCTTGCTCCCGAGCTAAAAACCAT
TCTTGGTGATGATGGCTACAAGTACAAGACAGTGCGCCGTCTCAAGTTCC
GCCGCCACCGCCGCGAGGCTGTCGCCGAAGAGGCTGCTGCCGAGTCCGCA
CCCAACGGAGAGTACCTGCCCCCCGCTGAGGCTGCCGCTGCCGCCCCCGC
TGCCGCCGAGGCCGAGCCAAAGTCCGCTGAGGAGGGCACTGAGTTGGCCA
AGGACGGCTACCGCTACAAGACTGTGCGCCGTCTGCGTTACCGCTACCGC
CACGCAAGCTTTCTAGACCAT

BO11643.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG11131-RB 690 CG11131-PB 1..687 17..703 3435 100 Plus
CG11131-RA 690 CG11131-PA 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11131-RB 1379 CG11131-RB 525..1211 17..703 3435 100 Plus
CG11131-RA 949 CG11131-RA 95..781 17..703 3435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22899410..22900094 19..703 3425 100 Plus
Blast to na_te.dros performed 2014-11-27 06:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 640..692 55..106 109 69.8 Plus

BO11643.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:05 Download gff for BO11643.complete
Subject Subject Range Query Range Percent Splice Strand
CG11131-RA 1..690 17..704 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:26 Download gff for BO11643.complete
Subject Subject Range Query Range Percent Splice Strand
CG11131-RA 84..780 12..709 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:16 Download gff for BO11643.complete
Subject Subject Range Query Range Percent Splice Strand
CG11131-RA 95..781 17..705 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:06 Download gff for BO11643.complete
Subject Subject Range Query Range Percent Splice Strand
CG11131-RA 84..780 12..709 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:03 Download gff for BO11643.complete
Subject Subject Range Query Range Percent Splice Strand
CG11131-RA 95..781 17..705 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:03 Download gff for BO11643.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22899409..22900094 17..705 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:16 Download gff for BO11643.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22892509..22893194 17..705 99   Plus

BO11643.pep Sequence

Translation from 16 to 721

> BO11643.pep
MKLFTAVLAICLVAFAAAQSADPAAALEPSSEYLPPVGEAEAAQLSENGY
KYRTVRRLKLRHRREVPNQEYLPPVENAPSQEYLPPVDAAAIGDTKVADD
GYRYKTVRKLKFRARHRRDVSEIAEPSGEYLPPVQVELAPELKTILGDDG
YKYKTVRRLKFRRHRREAVAEEAAAESAPNGEYLPPAEAAAAAPAAAEAE
PKSAEEGTELAKDGYRYKTVRRLRYRYRHASFLDH

BO11643.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11131-PB 229 CG11131-PB 1..229 1..229 1170 100 Plus
CG11131-PA 229 CG11131-PA 1..229 1..229 1170 100 Plus
CG32237-PA 911 CG32237-PA 1..240 1..228 398 44.5 Plus
CG32237-PA 911 CG32237-PA 581..800 28..228 392 44.9 Plus
CG13705-PA 432 CG13705-PA 1..207 1..233 391 45.4 Plus
CG32237-PA 911 CG32237-PA 189..408 28..228 388 44.4 Plus
CG32237-PA 911 CG32237-PA 469..688 28..228 388 44.4 Plus
CG32237-PA 911 CG32237-PA 77..296 28..228 387 44.9 Plus
CG32237-PA 911 CG32237-PA 301..520 28..228 385 44.9 Plus
CG32237-PA 911 CG32237-PA 245..464 28..228 380 44.1 Plus
CG32237-PA 911 CG32237-PA 525..744 28..228 379 43.6 Plus
CG32237-PA 911 CG32237-PA 693..910 28..230 376 43 Plus
CG32237-PA 911 CG32237-PA 637..856 28..228 375 43.6 Plus
CG13705-PA 432 CG13705-PA 206..432 28..229 371 43.4 Plus
CG13705-PA 432 CG13705-PA 161..343 28..233 359 46.8 Plus
CG7465-PA 321 CG7465-PA 1..264 1..229 355 39.7 Plus