Clone Sequence Records
BO11643.3prime Sequence
719 bp (718 high quality bases) assembled on 2006-04-19
> BO11643.3prime
ATGGTCTAGAAAGCTTGCGTGGCGGTAGCGGTAACGCAGACGGCGCACAG
TCTTGTAGCGGTAGCCGTCCTTGGCCAACTCAGTGCCCTCCTCAGCGGAC
TTTGGCTCGGCCTCGGCGGCAGCGGGGGCGGCAGCGGCAGCCTCAGCGGG
GGGCAGGTACTCTCCGTTGGGTGCGGACTCGGCAGCAGCCTCTTCGGCGA
CAGCCTCGCGGCGGTGGCGGCGGAACTTGAGACGGCGCACTGTCTTGTAC
TTGTAGCCATCATCACCAAGAATGGTTTTTAGCTCGGGAGCAAGCTCAAC
CTGCACGGGTGGGAGGTACTCGCCGCTGGGCTCAGCGATTTCGGAGACGT
CGCGGCGGTGGCGAGCACGGAACTTAAGCTTGCGCACCGTTTTGTACCGG
TAGCCGTCGTCGGCAACCTTGGTGTCACCAATGGCGGCGGCATCTACTGG
CGGCAGATATTCCTGGCTAGGTGCGTTTTCCACGGGAGGAAGGTATTCCT
GGTTAGGCACCTCGCGGCGGTGGCGCAGCTTCAGCCGGCGCACGGTCCTG
TACTTATATCCGTTCTCCGAAAGCTGGGCGGCCTCCGCCTCGCCGACGGG
AGGCAGGTACTCGGAGGAAGGCTCCAGTGCAGCAGCGGGATCAGCAGATT
GGGCTGCCGCAAAGGCCACTAGGCAGATGGCAAGGACGGCGGTGAAGAGT
TTCATGTCGACTGATAACT
BO11643.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11131-PA | 690 | CG11131-RA | 1..687 | 705..19 | 3435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11131-RB | 1379 | CG11131-RB | 525..1211 | 705..19 | 3435 | 100 | Minus |
CG11131-RA | 949 | CG11131-RA | 95..781 | 705..19 | 3435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:30:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22899410..22900094 | 703..19 | 3425 | 100 | Minus |
Blast to na_te.dros performed 2015-02-03 17:30:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 640..692 | 667..616 | 109 | 69.8 | Minus |
BO11643.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:22 Download gff for
BO11643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11131-PA | 1..690 | 18..705 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:38:23 Download gff for
BO11643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11131-PA | 1..690 | 18..705 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:35:39 Download gff for
BO11643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11131-RA | 90..786 | 13..710 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:02:22 Download gff for
BO11643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11131-RA | 90..786 | 13..710 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:02:22 Download gff for
BO11643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22899400..22900099 | 13..717 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:35:39 Download gff for
BO11643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22892500..22893199 | 13..717 | 98 | | Minus |
BO11643.5prime Sequence
719 bp (718 high quality bases) assembled on 2006-04-19
> BO11643.5prime
GAAGTTATCAGTCGACATGAAACTCTTCACCGCCGTCCTTGCCATCTGCC
TAGTGGCCTTTGCGGCAGCCCAATCTGCTGATCCCGCTGCTGCACTGGAG
CCTTCCTCCGAGTACCTGCCTCCCGTCGGCGAGGCGGAGGCCGCCCAGCT
TTCGGAGAACGGATATAAGTACAGGACCGTGCGCCGGCTGAAGCTGCGCC
ACCGCCGCGAGGTGCCTAACCAGGAATACCTTCCTCCCGTGGAAAACGCA
CCTAGCCAGGAATATCTGCCGCCAGTAGATGCCGCCGCCATTGGTGACAC
CAAGGTTGCCGACGACGGCTACCGGTACAAAACGGTGCGCAAGCTTAAGT
TCCGTGCTCGCCACCGCCGCGACGTCTCCGAAATCGCTGAGCCCAGCGGC
GAGTACCTCCCACCCGTGCAGGTTGAGCTTGCTCCCGAGCTAAAAACCAT
TCTTGGTGATGATGGCTACAAGTACAAGACAGTGCGCCGTCTCAAGTTCC
GCCGCCACCGCCGCGAGGCTGTCGCCGAAGAGGCTGCTGCCGAGTCCGCA
CCCAACGGAGAGTACCTGCCCCCCGCTGAGGCTGCCGCTGCCGCCCCCGC
TGCCGCCGAGGCCGAGCCAAAGTCCGCTGAGGAGGGCACTGAGTTGGCCA
AGGACGGCTACCGCTACAAGACTGTGCGCCGTCTGCGTTACCGCTACCGC
CACGCAAGCTTTCTAGACC
BO11643.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11131-PA | 690 | CG11131-RA | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:27:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11131-RB | 1379 | CG11131-RB | 525..1211 | 17..703 | 3435 | 100 | Plus |
CG11131-RA | 949 | CG11131-RA | 95..781 | 17..703 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:27:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22899410..22900094 | 19..703 | 3425 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 17:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 640..692 | 55..106 | 109 | 69.8 | Plus |
BO11643.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:24 Download gff for
BO11643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11131-PA | 1..690 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:38:24 Download gff for
BO11643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11131-PA | 1..690 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:31:38 Download gff for
BO11643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11131-RA | 90..786 | 12..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:46:42 Download gff for
BO11643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11131-RA | 90..786 | 12..709 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:46:42 Download gff for
BO11643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22899400..22900099 | 5..709 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:31:38 Download gff for
BO11643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22892500..22893199 | 5..709 | 98 | | Plus |
BO11643.complete Sequence
721 bp assembled on 2006-10-11
GenBank Submission: FJ632141
> BO11643.complete
GAAGTTATCAGTCGACATGAAACTCTTCACCGCCGTCCTTGCCATCTGCC
TAGTGGCCTTTGCGGCAGCCCAATCTGCTGATCCCGCTGCTGCACTGGAG
CCTTCCTCCGAGTACCTGCCTCCCGTCGGCGAGGCGGAGGCCGCCCAGCT
TTCGGAGAACGGATATAAGTACAGGACCGTGCGCCGGCTGAAGCTGCGCC
ACCGCCGCGAGGTGCCTAACCAGGAATACCTTCCTCCCGTGGAAAACGCA
CCTAGCCAGGAATATCTGCCGCCAGTAGATGCCGCCGCCATTGGTGACAC
CAAGGTTGCCGACGACGGCTACCGGTACAAAACGGTGCGCAAGCTTAAGT
TCCGTGCTCGCCACCGCCGCGACGTCTCCGAAATCGCTGAGCCCAGCGGC
GAGTACCTCCCACCCGTGCAGGTTGAGCTTGCTCCCGAGCTAAAAACCAT
TCTTGGTGATGATGGCTACAAGTACAAGACAGTGCGCCGTCTCAAGTTCC
GCCGCCACCGCCGCGAGGCTGTCGCCGAAGAGGCTGCTGCCGAGTCCGCA
CCCAACGGAGAGTACCTGCCCCCCGCTGAGGCTGCCGCTGCCGCCCCCGC
TGCCGCCGAGGCCGAGCCAAAGTCCGCTGAGGAGGGCACTGAGTTGGCCA
AGGACGGCTACCGCTACAAGACTGTGCGCCGTCTGCGTTACCGCTACCGC
CACGCAAGCTTTCTAGACCAT
BO11643.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:57:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11131-RB | 690 | CG11131-PB | 1..687 | 17..703 | 3435 | 100 | Plus |
CG11131-RA | 690 | CG11131-PA | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:57:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11131-RB | 1379 | CG11131-RB | 525..1211 | 17..703 | 3435 | 100 | Plus |
CG11131-RA | 949 | CG11131-RA | 95..781 | 17..703 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:57:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22899410..22900094 | 19..703 | 3425 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 06:57:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 640..692 | 55..106 | 109 | 69.8 | Plus |
BO11643.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:05 Download gff for
BO11643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11131-RA | 1..690 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:26 Download gff for
BO11643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11131-RA | 84..780 | 12..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:16 Download gff for
BO11643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11131-RA | 95..781 | 17..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:06 Download gff for
BO11643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11131-RA | 84..780 | 12..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:03 Download gff for
BO11643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11131-RA | 95..781 | 17..705 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:03 Download gff for
BO11643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22899409..22900094 | 17..705 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:16 Download gff for
BO11643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22892509..22893194 | 17..705 | 99 | | Plus |
BO11643.pep Sequence
Translation from 16 to 721
> BO11643.pep
MKLFTAVLAICLVAFAAAQSADPAAALEPSSEYLPPVGEAEAAQLSENGY
KYRTVRRLKLRHRREVPNQEYLPPVENAPSQEYLPPVDAAAIGDTKVADD
GYRYKTVRKLKFRARHRRDVSEIAEPSGEYLPPVQVELAPELKTILGDDG
YKYKTVRRLKFRRHRREAVAEEAAAESAPNGEYLPPAEAAAAAPAAAEAE
PKSAEEGTELAKDGYRYKTVRRLRYRYRHASFLDH
BO11643.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11131-PB | 229 | CG11131-PB | 1..229 | 1..229 | 1170 | 100 | Plus |
CG11131-PA | 229 | CG11131-PA | 1..229 | 1..229 | 1170 | 100 | Plus |
CG32237-PA | 911 | CG32237-PA | 1..240 | 1..228 | 398 | 44.5 | Plus |
CG32237-PA | 911 | CG32237-PA | 581..800 | 28..228 | 392 | 44.9 | Plus |
CG13705-PA | 432 | CG13705-PA | 1..207 | 1..233 | 391 | 45.4 | Plus |
CG32237-PA | 911 | CG32237-PA | 189..408 | 28..228 | 388 | 44.4 | Plus |
CG32237-PA | 911 | CG32237-PA | 469..688 | 28..228 | 388 | 44.4 | Plus |
CG32237-PA | 911 | CG32237-PA | 77..296 | 28..228 | 387 | 44.9 | Plus |
CG32237-PA | 911 | CG32237-PA | 301..520 | 28..228 | 385 | 44.9 | Plus |
CG32237-PA | 911 | CG32237-PA | 245..464 | 28..228 | 380 | 44.1 | Plus |
CG32237-PA | 911 | CG32237-PA | 525..744 | 28..228 | 379 | 43.6 | Plus |
CG32237-PA | 911 | CG32237-PA | 693..910 | 28..230 | 376 | 43 | Plus |
CG32237-PA | 911 | CG32237-PA | 637..856 | 28..228 | 375 | 43.6 | Plus |
CG13705-PA | 432 | CG13705-PA | 206..432 | 28..229 | 371 | 43.4 | Plus |
CG13705-PA | 432 | CG13705-PA | 161..343 | 28..233 | 359 | 46.8 | Plus |
CG7465-PA | 321 | CG7465-PA | 1..264 | 1..229 | 355 | 39.7 | Plus |