Clone BO11647 Report

Search the DGRC for BO11647

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG6830-RA
Protein status:BO11647.pep:
Sequenced Size:2707

Clone Sequence Records

BO11647.3prime Sequence

759 bp (736 high quality bases) assembled on 2006-04-19

> BO11647.3prime
ATGGTCTAGAAAGCTTGCTTGGGAATGTCCGTTGGCAAAATTATCAAGCA
GTCCTCGTCTATTTATCCATGGCATGACACGCTCTATATTGGCCCTATAA
CGTTCGTTGCTAAACATTGCCTCCCTCAGGGATTTGCCATTCTCTTCATT
TCCCAAAAAGCTATCAGTGGTAAAGTCATCGGTTGTCTTGTTAAGACACA
TCGACAAGGTAGTGAGCACAGTTCCAGCAGCAAAAATGGGGTGCTGTATC
AGAATGGCGTGCAGTTCCTTTAGCGAGGGAATAAATCCGTTGTAGTTCAA
CAGCTTGGCGTGCTCCTTCATGTTTTGATGATACCATCGGATAAGGTAGT
CAAACTGATCGACTTTGATGTCCAGTTGAGTGGAGCTCATTATGAAGTAA
TACAGATCCTGGGCAGGATTTCCATACTTCGTGACTTGGTGATCCAACAG
GAGGGTTTCCTTGACGCGACCATCTGATTCGTATTGGAACATGATGTTAT
TTATCCAGGCATCACCATGATTGAGCACATTAAACGCTTGTTCATTTATT
TTGGCATCTTCAAGTATTCTGTCGACATACGTATCCAAGATCTCTGGCAT
TTTGTGCAAGTACTCATCCACACCGTCAAACTTGCTCACTTCTTCTATAA
AGGATTTCTTAGTGTTAACAAACATACCCTTAAATATAGGTGCCGTTTGC
TCTGTAAAAATGCCATTATTGTATTTGGGCGAATAGGGTCCATTTAGTTC
CTTGTACTT

BO11647.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6830-PA 2676 CG6830-RA 1933..2673 759..19 3705 100 Minus
CG6834-PA 2688 CG6834-RA 2170..2252 561..479 215 90.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6830-RA 2781 CG6830-RA 2022..2762 759..19 3705 100 Minus
CG6834-RA 2886 CG6834-RA 2249..2568 561..242 580 79.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11681263..11681630 231..598 1840 100 Plus
3R 32079331 3R 11680991..11681203 19..231 1065 100 Plus
3R 32079331 3R 11681685..11681846 598..759 810 100 Plus
3R 32079331 3R 11685047..11685366 242..561 580 78.8 Plus
Blast to na_te.dros performed on 2015-02-12 11:51:12 has no hits.

BO11647.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:31 Download gff for BO11647.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6830-PA 1933..2676 15..759 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:38:33 Download gff for BO11647.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6830-PA 1933..2676 15..759 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:12:36 Download gff for BO11647.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6830-RA 2022..2772 10..759 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:54:59 Download gff for BO11647.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6830-RA 2022..2772 10..759 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:54:59 Download gff for BO11647.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11681685..11681846 598..759 100   Plus
3R 11680981..11681202 10..230 98 <- Plus
3R 11681263..11681629 231..597 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:12:36 Download gff for BO11647.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7506703..7506924 10..230 98 <- Plus
arm_3R 7506985..7507351 231..597 100 <- Plus
arm_3R 7507407..7507568 598..759 100   Plus

BO11647.5prime Sequence

897 bp (836 high quality bases) assembled on 2006-04-19

> BO11647.5prime
GAAGTTATCAGTCGACATGGGATTGAGAAATTCCAAGGAAAAGCAGAGCA
ATGAAGTGAAAACTTCGAAGCAAGCACCAAAGGCGCAGGTGAACCCTGAA
CCCCCAGCTCCACCCAACAAACCGGAACCCGAGGTGGATCACAGTGATTT
GGTGCCCAAGTGGCTGAATCAAACGCAATTTGAGGAATTACTCGCCGCCG
ATGTGGATCAGTTCTCCAAGATAGTGGGCTTCCGGGTGAAGCCAGCGATG
GCACCGGGAGAAAACTATGCCACTCTAATGCTCAGGATCAGCATAGATGT
GGAGCTCACTGACAAGAGCACTAAGCTGGTCTCCTTCATGATGAAAGTGC
CACACGATACTCCGCAAATGGAACAAATGATGAGCATGGCCAACTTCTTT
ACCAGCGAGAACGCAGCCTACACTGAGATTCTACCGAAAATGGAGGAGCT
CTATAAGGCCAAGGGTCTGGACATCAAATTCGCTCCGCGAGCATTCAAAC
TGGACGCCACCAAGGAGCCCAAGGTGGCTAATACGGTGCTGATGCACGAT
CTCGGTCAGAATGGTTTCAAAAACATAAACCGACTGGAGTGCCTGAACCT
GGAGCAAACCAAGTTCGCATTGACCAGACTAGCACAGTTCCATGCAGCGG
GAGCGACAATGGTCCAGGTGCATGGACCCTATCCCGACATATTCGTAAAC
GGCGTGATGGGAAACAACAAGGAAGCTATTATTGCATTCATGGAGGGCAT
GTTGGCATCCTTTAGAACGTCGTTTATGGCCAATCTGGATAAGTTCAAGA
ACGGAGAAGAATATCGGGAGAAGCTTGAAAAAGCTCTAGCTGGCCTAACT
ATGGAGTTCATGAAACCTGGTATCGTCGATCCCAACGAAGTTAATGC

BO11647.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6830-PA 2676 CG6830-RA 1..872 17..888 4335 99.8 Plus
CG6834-PA 2688 CG6834-RA 194..302 165..273 445 96.3 Plus
CG6834-PA 2688 CG6834-RA 307..369 278..340 215 93.6 Plus
CG6834-PA 2688 CG6834-RA 394..440 365..411 135 91.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6830-RA 2781 CG6830-RA 90..970 17..897 4360 99.7 Plus
CG6834-RA 2886 CG6834-RA 255..939 147..831 1400 80.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11683150..11683666 827..311 2585 100 Minus
3R 32079331 3R 11683959..11684253 311..17 1475 100 Minus
3R 32079331 3R 11686905..11687426 832..311 765 76.4 Minus
3R 32079331 3R 11687715..11687879 311..147 630 92.1 Minus
3R 32079331 3R 11683018..11683088 897..827 310 95.8 Minus
Blast to na_te.dros performed on 2015-02-11 15:16:17 has no hits.

BO11647.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:32 Download gff for BO11647.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6830-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:38:35 Download gff for BO11647.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6830-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:19:20 Download gff for BO11647.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6830-RA 90..970 17..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:08:16 Download gff for BO11647.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6830-RA 90..970 17..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:08:16 Download gff for BO11647.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11683018..11683088 827..897 95 <- Minus
3R 11683959..11684253 17..311 100   Minus
3R 11683151..11683665 312..826 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:19:20 Download gff for BO11647.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7508740..7508810 827..897 95 <- Minus
arm_3R 7508873..7509387 312..826 100 <- Minus
arm_3R 7509681..7509975 17..311 100   Minus

BO11647.complete Sequence

2707 bp assembled on 2008-01-17

GenBank Submission: FJ632142

> BO11647.complete
GAAGTTATCAGTCGACATGGGATTGAGAAATTCCAAGGAAAAGCAGAGCA
ATGAAGTGAAAACTTCGAAGCAAGCACCAAAGGCGCAGGTGAACCCTGAA
CCCCCAGCTCCACCCAACAAACCGGAACCCGAGGTGGATCACAGTGATTT
GGTGCCCAAGTGGCTGAATCAAACGCAATTTGAGGAATTACTCGCCGCCG
ATGTGGATCAGTTCTCCAAGATAGTGGGCTTCCGGGTGAAGCCAGCGATG
GCACCGGGAGAAAACTATGCCACTCTAATGCTCAGGATCAGCATAGATGT
GGAGCTCACTGACAAGAGCACTAAGCTGGTCTCCTTCATGATGAAAGTGC
CACACGATACTCCGCAAATGGAACAAATGATGAGCATGGCCAACTTCTTT
ACCAGCGAGAACGCAGCCTACACTGAGATTCTACCGAAAATGGAGGAGCT
CTATAAGGCCAAGGGTCTGGACATCAAATTCGCTCCGCGAGCATTCAAAC
TGGACGCCACCAAGGAGCCCAAGGTGGCTAATACGGTGCTGATGCACGAT
CTCGGTCAGAATGGTTTCAAAAACATAAACCGACTGGAGTGCCTGAACCT
GGAGCAAACCAAGTTCGCATTGACCAGACTAGCACAGTTCCATGCAGCGG
GAGCGACAATGGTCCAGGTGCATGGACCCTATCCCGACATATTCGTAAAC
GGCGTGATGGGAAACAACAAGGAAGCTATTATTGCATTCATGGAGGGCAT
GTTGGCATCCTTTAGAACGTCGTTTATGGCCAATCTGGATAAGTTCAAGA
ACGGAGAAGAATATCGGGAGAAGCTTGAAAAAGCTCTAGCTGGCCTAACT
ATGGAGTTCATGAAACTTGGTATCGTCGATCCCAACGAGTTTAATGCGCT
AAACCATGGCGATTGCTGGATGAATAATCTTCTGTTCAAGATGAACTCCA
GCGGGGACTTGGAGGATATGGTCTTTGTCGATTTCCAGAATCCCAAATAC
GGCTCTCCTGCCATGGATCTGCTCTACTTCATCATTTCCTCGGTTCAAAT
TGATTACAAGCTGAGCCATTTTGACTTTTTCATCAGGCATTACCAAGAAG
CACTGGTTAAGCACTTGGGCATTTTGGGATTCACTGGCCGAAAGCCATCG
CTGAGGGAATTGCACCGAACGCTCATCAAATACGGCGGATGGGTGCTATT
CCCAACCATCTCCGTGCTGCCATTGGTTCTCTTGGACCCCACTCAGTCGG
CCACATTCGATAATTTTATGTCGGACTCTGCTGATGGGGTTAGTTTCAGG
GGTAGTTTGTATGCCAACAAACGTTGTCAAGAATACATCGAACGCATTCT
GCCTTGGTTGGATAATAGAGGCTTCTTGGAGGTCAGCACTGACCCATTGC
CACCCGAACTGCTGGCAGCTTTGAAGCCACAGCAGCCACAGCCGGAGAAT
ACGGATCAGATCCCGGACTGGCTAAATATTGACGATTTCAAGGAAATCAT
TTTATCCGCGGAACCAAATTTCGAAAAGATCTTAAGCAGTACTTCAAAGT
TGGCGACGAAACCTGGCGACAACTTTGCTTCCAAGCTGCTGAAGGTCGAA
ATCGAGGCGCAGTTAAAAGACAATAGCGTGAAGACCTTCTCGTACATCCT
GAAAGTCCACAGCGACAATGACGCAATCAACTTCTCCGACTTTAACCTGT
TTCCAAAAGAGATAGAGGTTTACAGCACATATGTGCCCGCCTTCGAGCGT
TTCTATAAGGATGTTGGCCTACCAGTCACTTTTAGTCCGAAGTCCTTCCG
GCTCAGCAAGGACGTCAGCAAGGAGTACCTGCTTTTGGAGAACCTGCAGC
CGAGTGGCTTCAAGATGGTCGATCGCATGATTGGAATGGACTTGGAGCAT
TCCAAGTGCACGTTAAAGAAATTGGCCCAGTGGCATGCAGCCTCTCTGAA
GTACAAGGAACTAAATGGACCCTATTCGCCCAAATACAATAATGGCATTT
TTACAGAGCAAACGGCACCTATATTTAAGGGTATGTTTGTTAACACTAAG
AAATCCTTTATAGAAGAAGTGAGCAAGTTTGACGGTGTGGATGAGTACTT
GCACAAAATGCCAGAGATCTTGGATACGTATGTCGACAGAATACTTGAAG
ATGCCAAAATAAATGAACAAGCGTTTAATGTGCTCAATCATGGTGATGCC
TGGATAAATAACATCATGTTCCAATACGAATCAGATGGTCGCGTCAAGGA
AACCCTCCTGTTGGATCACCAAGTCACGAAGTATGGAAATCCTGCCCAGG
ATCTGTATTACTTCATAATGAGCTCCACTCAACTGGACATCAAAGTCGAT
CAGTTTGACTACCTTATCCGATGGTATCATCAAAACATGAAGGAGCACGC
CAAGCTGTTGAACTACAACGGATTTATTCCCTCGCTAAAGGAACTGCACG
CCATTCTGATACAGCACCCCATTTTTGCTGCTGGAACTGTGCTCACTACC
TTGTCGATGTGTCTTAACAAGACAACCGATGACTTTACCACTGATAGCTT
TTTGGGAAATGAAGAGAATGGCAAATCCCTGAGGGAGGCAATGTTTAGCA
ACGAACGTTATAGGGCCAATATAGAGCGTGTCATGCCATGGATAAATAGA
CGAGGACTGCTTGATAATTTTGCCAACGGACATTCCCAAGCAAGCTTTCT
AGACCAT

BO11647.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6830-RA 2676 CG6830-PA 1..2673 17..2689 13365 100 Plus
CG6834-RA 2688 CG6834-PA 176..1124 147..1095 1565 77.7 Plus
CG6834-RA 2688 CG6834-PA 2170..2489 2147..2466 580 78.8 Plus
CG6834-RA 2688 CG6834-PA 1853..1991 1830..1968 215 77 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6830-RA 2781 CG6830-RA 90..2762 17..2689 13365 100 Plus
CG6834-RA 2886 CG6834-RA 255..1203 147..1095 1565 77.7 Plus
CG6834-RA 2886 CG6834-RA 2249..2568 2147..2466 580 78.8 Plus
CG6834-RA 2886 CG6834-RA 1932..2070 1830..1968 215 77 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11682529..11683088 1386..827 2800 100 Minus
3R 32079331 3R 11683150..11683666 827..311 2585 100 Minus
3R 32079331 3R 11681685..11682177 2110..1618 2465 100 Minus
3R 32079331 3R 11681263..11681630 2477..2110 1840 100 Minus
3R 32079331 3R 11683959..11684253 311..17 1475 100 Minus
3R 32079331 3R 11682235..11682469 1619..1385 1175 100 Minus
3R 32079331 3R 11680991..11681203 2689..2477 1065 100 Minus
3R 32079331 3R 11686905..11687426 832..311 765 76.4 Minus
3R 32079331 3R 11687715..11687879 311..147 630 92.1 Minus
3R 32079331 3R 11685047..11685366 2466..2147 580 78.8 Minus
3R 32079331 3R 11686585..11686803 1095..877 360 77.6 Minus
3R 32079331 3R 11685613..11685751 1968..1830 215 77 Minus
Blast to na_te.dros performed on 2014-11-27 07:07:06 has no hits.

BO11647.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:51 Download gff for BO11647.complete
Subject Subject Range Query Range Percent Splice Strand
CG6830-RA 1..2676 17..2693 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:32 Download gff for BO11647.complete
Subject Subject Range Query Range Percent Splice Strand
CG6830-RA 88..2760 17..2691 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:45 Download gff for BO11647.complete
Subject Subject Range Query Range Percent Splice Strand
CG6830-RA 90..2762 17..2691 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:51 Download gff for BO11647.complete
Subject Subject Range Query Range Percent Splice Strand
CG6830-RA 88..2770 17..2698 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:24 Download gff for BO11647.complete
Subject Subject Range Query Range Percent Splice Strand
CG6830-RA 90..2762 17..2691 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:24 Download gff for BO11647.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11680989..11681202 2478..2691 99 <- Minus
3R 11681263..11681629 2111..2477 100 <- Minus
3R 11681685..11682175 1620..2110 100 <- Minus
3R 11682235..11682467 1387..1619 100 <- Minus
3R 11682529..11683088 827..1386 100 <- Minus
3R 11683151..11683665 312..826 100 <- Minus
3R 11683959..11684253 17..311 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:45 Download gff for BO11647.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7506711..7506924 2478..2691 99 <- Minus
arm_3R 7506985..7507351 2111..2477 100 <- Minus
arm_3R 7507407..7507897 1620..2110 100 <- Minus
arm_3R 7507957..7508189 1387..1619 100 <- Minus
arm_3R 7508251..7508810 827..1386 100 <- Minus
arm_3R 7508873..7509387 312..826 100 <- Minus
arm_3R 7509681..7509975 17..311 100   Minus

BO11647.pep Sequence

Translation from 16 to 2707

> BO11647.pep
MGLRNSKEKQSNEVKTSKQAPKAQVNPEPPAPPNKPEPEVDHSDLVPKWL
NQTQFEELLAADVDQFSKIVGFRVKPAMAPGENYATLMLRISIDVELTDK
STKLVSFMMKVPHDTPQMEQMMSMANFFTSENAAYTEILPKMEELYKAKG
LDIKFAPRAFKLDATKEPKVANTVLMHDLGQNGFKNINRLECLNLEQTKF
ALTRLAQFHAAGATMVQVHGPYPDIFVNGVMGNNKEAIIAFMEGMLASFR
TSFMANLDKFKNGEEYREKLEKALAGLTMEFMKLGIVDPNEFNALNHGDC
WMNNLLFKMNSSGDLEDMVFVDFQNPKYGSPAMDLLYFIISSVQIDYKLS
HFDFFIRHYQEALVKHLGILGFTGRKPSLRELHRTLIKYGGWVLFPTISV
LPLVLLDPTQSATFDNFMSDSADGVSFRGSLYANKRCQEYIERILPWLDN
RGFLEVSTDPLPPELLAALKPQQPQPENTDQIPDWLNIDDFKEIILSAEP
NFEKILSSTSKLATKPGDNFASKLLKVEIEAQLKDNSVKTFSYILKVHSD
NDAINFSDFNLFPKEIEVYSTYVPAFERFYKDVGLPVTFSPKSFRLSKDV
SKEYLLLENLQPSGFKMVDRMIGMDLEHSKCTLKKLAQWHAASLKYKELN
GPYSPKYNNGIFTEQTAPIFKGMFVNTKKSFIEEVSKFDGVDEYLHKMPE
ILDTYVDRILEDAKINEQAFNVLNHGDAWINNIMFQYESDGRVKETLLLD
HQVTKYGNPAQDLYYFIMSSTQLDIKVDQFDYLIRWYHQNMKEHAKLLNY
NGFIPSLKELHAILIQHPIFAAGTVLTTLSMCLNKTTDDFTTDSFLGNEE
NGKSLREAMFSNERYRANIERVMPWINRRGLLDNFANGHSQASFLDH

BO11647.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6830-PA 891 CG6830-PA 1..891 1..891 4665 100 Plus
CG6834-PA 895 CG6834-PA 1..894 1..883 3038 63.7 Plus
CHKov1-PE 410 CG10618-PE 6..408 46..455 835 40.2 Plus
CG10562-PA 405 CG10562-PA 3..405 43..456 828 41.4 Plus
CHKov1-PE 410 CG10618-PE 5..408 481..883 776 36.2 Plus
CG10553-PA 414 CG10553-PA 3..414 32..455 776 38.6 Plus
CG10562-PA 405 CG10562-PA 3..404 479..883 769 36.9 Plus
CG6834-PA 895 CG6834-PA 49..472 471..885 710 34.5 Plus