Clone Sequence Records
BO11649.3prime Sequence
854 bp (802 high quality bases) assembled on 2006-04-19
> BO11649.3prime
ATGGTCTAGAAAGCTTGCCTTGAGGTCTTGGGTATCCAGGAGGGGCAAGA
CGCTGTCTTCCATTTTGGCACTGGTCGGGCCAAAACGTCGCCTGTCGGGC
GGACTGACGGCGTTGGAGCTGCTCACTCCGAATGCTAGGGCTGCGCGCAG
CGCTTTGCGATTTTCGATAACGCGGTCAAAGAAGCGGGACAGTTTCACGG
CATCAGTGGTACCAGCGGCCAGGCTGCGACTGTTGCGGCAATTTAGCCAA
ATCTCCTCGGCTCCACACTTGTCGGCTATTCCGCCCGGCTTCTTCACCCC
CATTTTGGGATGGCGCTTCTCGTCCAAGAGATCCAGCTTGGTGCCCATGA
CCAGGATAGGCGTTTGCGTGGCGCCCAGAAACTCCTCCATGTCGAAGAGA
ATGTGGCCGTCCGTTCCGAGGTTGTCCGTTGAGAAGCTGCTCAGCGGGCT
GGGCGGCGATGGCGGCATGGAGGCTCCGTTCGATTTGTTCGTATCCTTGC
CCTCCTTGTTGACGATCTCGTACAGCCAGTCGATTAGCTGCCTCTGCGAC
TTGGCGTTGGTAAGGTCGTGCACCAGAATGATTCCATCGATGCCCGCATA
GAAGACGCTGCGCGTGTTCTTGTGGTTCAGCGATCCCCCAACATCGAACA
GCTCCACGAAGTAGGGACACTCGCGAGCGGTGCCCTCCCTGAACGGATGC
ATCTTCACCTGGATGTTGCAGCCCACCGTCCAGCCGGGCCGGATGAGGGC
TTCGTTGTGGGTGATCAGGTGCGTCAGGGAGGTCTTCCCCACACCCGAAT
CGCCAACCACAACAATTCGCACTCGATTATTCATCGCCATGTCGACTGAT
AACT
BO11649.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4789-PA | 825 | CG4789-RA | 1..822 | 840..19 | 4110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4789-RA | 942 | CG4789-RA | 31..852 | 840..19 | 4110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16801068..16801587 | 795..276 | 2600 | 100 | Minus |
X | 23542271 | X | 16801652..16801910 | 277..19 | 1295 | 100 | Minus |
X | 23542271 | X | 16800960..16801007 | 840..793 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 17:31:04 has no hits.
BO11649.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:33 Download gff for
BO11649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-PA | 1..825 | 16..840 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:38:37 Download gff for
BO11649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-PA | 1..825 | 16..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:35:41 Download gff for
BO11649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-RA | 42..880 | 12..854 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:02:23 Download gff for
BO11649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-RA | 19..857 | 12..854 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:02:23 Download gff for
BO11649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16800948..16801005 | 795..854 | 91 | -> | Minus |
X | 16801069..16801587 | 276..794 | 100 | -> | Minus |
X | 16801654..16801915 | 12..275 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:35:41 Download gff for
BO11649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16694981..16695038 | 795..854 | 91 | -> | Minus |
arm_X | 16695102..16695620 | 276..794 | 100 | -> | Minus |
arm_X | 16695687..16695948 | 12..275 | 98 | | Minus |
BO11649.5prime Sequence
827 bp (760 high quality bases) assembled on 2006-04-19
> BO11649.5prime
GAAGTTATCAGTCGACATGGCGATGAATAATCGAGTGCGAATTGTTGTGG
TTGGCGATTCGGGTGTGGGGAAGACCTCCCTGACGCACCTGATCACCCAC
AACGAAGCCCTCATCCGGCCCGGCTGGACGGTGGGCTGCAACATCCAGGT
GAAGATGCATCCGTTCAGGGAGGGCACCGCTCGCGAGTGTCCCTACTTCG
TGGAGCTGTTCGATGTTGGGGGATCGCTGAACCACAAGAACACGCGCAGC
GTCTTCTATGCGGGCATCGATGGAATCATTCTGGTGCACGACCTTACCAA
CGCCAAGTCGCAGAGGCAGCTAATCGACTGGCTGTACGAGATCGTCAACA
AGGAGGGCAAGGATACGAACAAATCGAACGGAGCCTCCATGCCGCCATCG
CCGCCCAGCCCGCTGAGCAGCTTCTCAACGGACAACCTCGGAACGGACGG
CCACATTCTCTTCGACATGGAGGAGTTTCTGGGCGCCACGCAAACGCCTA
TCCTGGTCATGGGCACCAAGCTGGATCTCTTGGACGAGAAGCGCCATCCC
AAAATGGGGGTGAAGAAGCCGGGCGGAATAGCCGACAAGTGTGGAGCCGA
GGAGATTTGGCTAAATTGCCGCAACAGTCGCAGCCTGGCCGCTGGTACCA
CTGATGCCGTGAAACTGTCCCGCTTCTTTGACCGCGTTATCGAAAATCGC
AAAGCGCTGCGCGCAGCCCTAGCATTCGGAGTGAGCAGCTCCAACGCCGT
CAGTCCGCCCGACAGGCGACGTTTTGGCCCGACCAGTGCCCAAATGGAAG
ACAGCGTCTTGCCCCTCCTGGATTCCC
BO11649.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4789-PA | 825 | CG4789-RA | 1..807 | 17..823 | 4010 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4789-RA | 942 | CG4789-RA | 31..841 | 17..827 | 4025 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16801068..16801587 | 62..581 | 2600 | 100 | Plus |
X | 23542271 | X | 16801652..16801899 | 580..827 | 1210 | 99.2 | Plus |
X | 23542271 | X | 16800960..16801007 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:15:11 has no hits.
BO11649.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:34 Download gff for
BO11649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-PA | 1..811 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:38:38 Download gff for
BO11649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-PA | 1..811 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:25:30 Download gff for
BO11649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-RA | 42..864 | 3..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:55:54 Download gff for
BO11649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-RA | 19..841 | 3..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:55:54 Download gff for
BO11649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16800948..16801005 | 3..62 | 91 | -> | Plus |
X | 16801069..16801587 | 63..581 | 100 | -> | Plus |
X | 16801654..16801899 | 582..827 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:25:30 Download gff for
BO11649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16694981..16695038 | 3..62 | 91 | -> | Plus |
arm_X | 16695102..16695620 | 63..581 | 100 | -> | Plus |
arm_X | 16695687..16695932 | 582..827 | 99 | | Plus |
BO11649.complete Sequence
856 bp assembled on 2006-10-11
GenBank Submission: FJ632143
> BO11649.complete
GAAGTTATCAGTCGACATGGCGATGAATAATCGAGTGCGAATTGTTGTGG
TTGGCGATTCGGGTGTGGGGAAGACCTCCCTGACGCACCTGATCACCCAC
AACGAAGCCCTCATCCGGCCCGGCTGGACGGTGGGCTGCAACATCCAGGT
GAAGATGCATCCGTTCAGGGAGGGCACCGCTCGCGAGTGTCCCTACTTCG
TGGAGCTGTTCGATGTTGGGGGATCGCTGAACCACAAGAACACGCGCAGC
GTCTTCTATGCGGGCATCGATGGAATCATTCTGGTGCACGACCTTACCAA
CGCCAAGTCGCAGAGGCAGCTAATCGACTGGCTGTACGAGATCGTCAACA
AGGAGGGCAAGGATACGAACAAATCGAACGGAGCCTCCATGCCGCCATCG
CCGCCCAGCCCGCTGAGCAGCTTCTCAACGGACAACCTCGGAACGGACGG
CCACATTCTCTTCGACATGGAGGAGTTTCTGGGCGCCACGCAAACGCCTA
TCCTGGTCATGGGCACCAAGCTGGATCTCTTGGACGAGAAGCGCCATCCC
AAAATGGGGGTGAAGAAGCCGGGCGGAATAGCCGACAAGTGTGGAGCCGA
GGAGATTTGGCTAAATTGCCGCAACAGTCGCAGCCTGGCCGCTGGTACCA
CTGATGCCGTGAAACTGTCCCGCTTCTTTGACCGCGTTATCGAAAATCGC
AAAGCGCTGCGCGCAGCCCTAGCATTCGGAGTGAGCAGCTCCAACGCCGT
CAGTCCGCCCGACAGGCGACGTTTTGGCCCGACCAGTGCCAAAATGGAAG
ACAGCGTCTTGCCCCTCCTGGATACCCAAGACCTCAAGGCAAGCTTTCTA
GACCAT
BO11649.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:22:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4789-RA | 825 | CG4789-PA | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:22:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4789-RA | 942 | CG4789-RA | 31..852 | 17..838 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:22:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16801068..16801587 | 62..581 | 2600 | 100 | Plus |
X | 23542271 | X | 16801652..16801910 | 580..838 | 1295 | 100 | Plus |
X | 23542271 | X | 16800960..16801007 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:22:32 has no hits.
BO11649.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:07 Download gff for
BO11649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-RA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:14 Download gff for
BO11649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-RA | 1..833 | 10..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:00 Download gff for
BO11649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-RA | 54..875 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:07 Download gff for
BO11649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-RA | 1..833 | 10..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:21 Download gff for
BO11649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4789-RA | 31..852 | 17..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:21 Download gff for
BO11649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16800960..16801005 | 17..62 | 100 | -> | Plus |
X | 16801069..16801587 | 63..581 | 100 | -> | Plus |
X | 16801654..16801910 | 582..840 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:00 Download gff for
BO11649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16694993..16695038 | 17..62 | 100 | -> | Plus |
arm_X | 16695102..16695620 | 63..581 | 100 | -> | Plus |
arm_X | 16695687..16695943 | 582..840 | 99 | | Plus |
BO11649.pep Sequence
Translation from 16 to 856
> BO11649.pep
MAMNNRVRIVVVGDSGVGKTSLTHLITHNEALIRPGWTVGCNIQVKMHPF
REGTARECPYFVELFDVGGSLNHKNTRSVFYAGIDGIILVHDLTNAKSQR
QLIDWLYEIVNKEGKDTNKSNGASMPPSPPSPLSSFSTDNLGTDGHILFD
MEEFLGATQTPILVMGTKLDLLDEKRHPKMGVKKPGGIADKCGAEEIWLN
CRNSRSLAAGTTDAVKLSRFFDRVIENRKALRAALAFGVSSSNAVSPPDR
RRFGPTSAKMEDSVLPLLDTQDLKASFLDH
BO11649.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4789-PA | 274 | CG4789-PA | 1..274 | 1..274 | 1430 | 100 | Plus |