Clone BO11649 Report

Search the DGRC for BO11649

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG4789-RA
Protein status:BO11649.pep: validated full length
Sequenced Size:856

Clone Sequence Records

BO11649.3prime Sequence

854 bp (802 high quality bases) assembled on 2006-04-19

> BO11649.3prime
ATGGTCTAGAAAGCTTGCCTTGAGGTCTTGGGTATCCAGGAGGGGCAAGA
CGCTGTCTTCCATTTTGGCACTGGTCGGGCCAAAACGTCGCCTGTCGGGC
GGACTGACGGCGTTGGAGCTGCTCACTCCGAATGCTAGGGCTGCGCGCAG
CGCTTTGCGATTTTCGATAACGCGGTCAAAGAAGCGGGACAGTTTCACGG
CATCAGTGGTACCAGCGGCCAGGCTGCGACTGTTGCGGCAATTTAGCCAA
ATCTCCTCGGCTCCACACTTGTCGGCTATTCCGCCCGGCTTCTTCACCCC
CATTTTGGGATGGCGCTTCTCGTCCAAGAGATCCAGCTTGGTGCCCATGA
CCAGGATAGGCGTTTGCGTGGCGCCCAGAAACTCCTCCATGTCGAAGAGA
ATGTGGCCGTCCGTTCCGAGGTTGTCCGTTGAGAAGCTGCTCAGCGGGCT
GGGCGGCGATGGCGGCATGGAGGCTCCGTTCGATTTGTTCGTATCCTTGC
CCTCCTTGTTGACGATCTCGTACAGCCAGTCGATTAGCTGCCTCTGCGAC
TTGGCGTTGGTAAGGTCGTGCACCAGAATGATTCCATCGATGCCCGCATA
GAAGACGCTGCGCGTGTTCTTGTGGTTCAGCGATCCCCCAACATCGAACA
GCTCCACGAAGTAGGGACACTCGCGAGCGGTGCCCTCCCTGAACGGATGC
ATCTTCACCTGGATGTTGCAGCCCACCGTCCAGCCGGGCCGGATGAGGGC
TTCGTTGTGGGTGATCAGGTGCGTCAGGGAGGTCTTCCCCACACCCGAAT
CGCCAACCACAACAATTCGCACTCGATTATTCATCGCCATGTCGACTGAT
AACT

BO11649.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4789-PA 825 CG4789-RA 1..822 840..19 4110 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4789-RA 942 CG4789-RA 31..852 840..19 4110 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16801068..16801587 795..276 2600 100 Minus
X 23542271 X 16801652..16801910 277..19 1295 100 Minus
X 23542271 X 16800960..16801007 840..793 240 100 Minus
Blast to na_te.dros performed on 2015-02-03 17:31:04 has no hits.

BO11649.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:33 Download gff for BO11649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4789-PA 1..825 16..840 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:38:37 Download gff for BO11649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4789-PA 1..825 16..840 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:35:41 Download gff for BO11649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 42..880 12..854 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:02:23 Download gff for BO11649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 19..857 12..854 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:02:23 Download gff for BO11649.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16800948..16801005 795..854 91 -> Minus
X 16801069..16801587 276..794 100 -> Minus
X 16801654..16801915 12..275 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:35:41 Download gff for BO11649.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16694981..16695038 795..854 91 -> Minus
arm_X 16695102..16695620 276..794 100 -> Minus
arm_X 16695687..16695948 12..275 98   Minus

BO11649.5prime Sequence

827 bp (760 high quality bases) assembled on 2006-04-19

> BO11649.5prime
GAAGTTATCAGTCGACATGGCGATGAATAATCGAGTGCGAATTGTTGTGG
TTGGCGATTCGGGTGTGGGGAAGACCTCCCTGACGCACCTGATCACCCAC
AACGAAGCCCTCATCCGGCCCGGCTGGACGGTGGGCTGCAACATCCAGGT
GAAGATGCATCCGTTCAGGGAGGGCACCGCTCGCGAGTGTCCCTACTTCG
TGGAGCTGTTCGATGTTGGGGGATCGCTGAACCACAAGAACACGCGCAGC
GTCTTCTATGCGGGCATCGATGGAATCATTCTGGTGCACGACCTTACCAA
CGCCAAGTCGCAGAGGCAGCTAATCGACTGGCTGTACGAGATCGTCAACA
AGGAGGGCAAGGATACGAACAAATCGAACGGAGCCTCCATGCCGCCATCG
CCGCCCAGCCCGCTGAGCAGCTTCTCAACGGACAACCTCGGAACGGACGG
CCACATTCTCTTCGACATGGAGGAGTTTCTGGGCGCCACGCAAACGCCTA
TCCTGGTCATGGGCACCAAGCTGGATCTCTTGGACGAGAAGCGCCATCCC
AAAATGGGGGTGAAGAAGCCGGGCGGAATAGCCGACAAGTGTGGAGCCGA
GGAGATTTGGCTAAATTGCCGCAACAGTCGCAGCCTGGCCGCTGGTACCA
CTGATGCCGTGAAACTGTCCCGCTTCTTTGACCGCGTTATCGAAAATCGC
AAAGCGCTGCGCGCAGCCCTAGCATTCGGAGTGAGCAGCTCCAACGCCGT
CAGTCCGCCCGACAGGCGACGTTTTGGCCCGACCAGTGCCCAAATGGAAG
ACAGCGTCTTGCCCCTCCTGGATTCCC

BO11649.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4789-PA 825 CG4789-RA 1..807 17..823 4010 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4789-RA 942 CG4789-RA 31..841 17..827 4025 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16801068..16801587 62..581 2600 100 Plus
X 23542271 X 16801652..16801899 580..827 1210 99.2 Plus
X 23542271 X 16800960..16801007 17..64 240 100 Plus
Blast to na_te.dros performed on 2015-02-12 13:15:11 has no hits.

BO11649.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:34 Download gff for BO11649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4789-PA 1..811 17..827 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:38:38 Download gff for BO11649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4789-PA 1..811 17..827 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:25:30 Download gff for BO11649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 42..864 3..827 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:55:54 Download gff for BO11649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 19..841 3..827 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:55:54 Download gff for BO11649.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16800948..16801005 3..62 91 -> Plus
X 16801069..16801587 63..581 100 -> Plus
X 16801654..16801899 582..827 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:25:30 Download gff for BO11649.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16694981..16695038 3..62 91 -> Plus
arm_X 16695102..16695620 63..581 100 -> Plus
arm_X 16695687..16695932 582..827 99   Plus

BO11649.complete Sequence

856 bp assembled on 2006-10-11

GenBank Submission: FJ632143

> BO11649.complete
GAAGTTATCAGTCGACATGGCGATGAATAATCGAGTGCGAATTGTTGTGG
TTGGCGATTCGGGTGTGGGGAAGACCTCCCTGACGCACCTGATCACCCAC
AACGAAGCCCTCATCCGGCCCGGCTGGACGGTGGGCTGCAACATCCAGGT
GAAGATGCATCCGTTCAGGGAGGGCACCGCTCGCGAGTGTCCCTACTTCG
TGGAGCTGTTCGATGTTGGGGGATCGCTGAACCACAAGAACACGCGCAGC
GTCTTCTATGCGGGCATCGATGGAATCATTCTGGTGCACGACCTTACCAA
CGCCAAGTCGCAGAGGCAGCTAATCGACTGGCTGTACGAGATCGTCAACA
AGGAGGGCAAGGATACGAACAAATCGAACGGAGCCTCCATGCCGCCATCG
CCGCCCAGCCCGCTGAGCAGCTTCTCAACGGACAACCTCGGAACGGACGG
CCACATTCTCTTCGACATGGAGGAGTTTCTGGGCGCCACGCAAACGCCTA
TCCTGGTCATGGGCACCAAGCTGGATCTCTTGGACGAGAAGCGCCATCCC
AAAATGGGGGTGAAGAAGCCGGGCGGAATAGCCGACAAGTGTGGAGCCGA
GGAGATTTGGCTAAATTGCCGCAACAGTCGCAGCCTGGCCGCTGGTACCA
CTGATGCCGTGAAACTGTCCCGCTTCTTTGACCGCGTTATCGAAAATCGC
AAAGCGCTGCGCGCAGCCCTAGCATTCGGAGTGAGCAGCTCCAACGCCGT
CAGTCCGCCCGACAGGCGACGTTTTGGCCCGACCAGTGCCAAAATGGAAG
ACAGCGTCTTGCCCCTCCTGGATACCCAAGACCTCAAGGCAAGCTTTCTA
GACCAT

BO11649.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4789-RA 825 CG4789-PA 1..822 17..838 4110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4789-RA 942 CG4789-RA 31..852 17..838 4110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16801068..16801587 62..581 2600 100 Plus
X 23542271 X 16801652..16801910 580..838 1295 100 Plus
X 23542271 X 16800960..16801007 17..64 240 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:22:32 has no hits.

BO11649.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:07 Download gff for BO11649.complete
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 1..825 17..841 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:14 Download gff for BO11649.complete
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 1..833 10..845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:00 Download gff for BO11649.complete
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 54..875 17..840 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:07 Download gff for BO11649.complete
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 1..833 10..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:21 Download gff for BO11649.complete
Subject Subject Range Query Range Percent Splice Strand
CG4789-RA 31..852 17..840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:21 Download gff for BO11649.complete
Subject Subject Range Query Range Percent Splice Strand
X 16800960..16801005 17..62 100 -> Plus
X 16801069..16801587 63..581 100 -> Plus
X 16801654..16801910 582..840 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:00 Download gff for BO11649.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16694993..16695038 17..62 100 -> Plus
arm_X 16695102..16695620 63..581 100 -> Plus
arm_X 16695687..16695943 582..840 99   Plus

BO11649.pep Sequence

Translation from 16 to 856

> BO11649.pep
MAMNNRVRIVVVGDSGVGKTSLTHLITHNEALIRPGWTVGCNIQVKMHPF
REGTARECPYFVELFDVGGSLNHKNTRSVFYAGIDGIILVHDLTNAKSQR
QLIDWLYEIVNKEGKDTNKSNGASMPPSPPSPLSSFSTDNLGTDGHILFD
MEEFLGATQTPILVMGTKLDLLDEKRHPKMGVKKPGGIADKCGAEEIWLN
CRNSRSLAAGTTDAVKLSRFFDRVIENRKALRAALAFGVSSSNAVSPPDR
RRFGPTSAKMEDSVLPLLDTQDLKASFLDH

BO11649.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4789-PA 274 CG4789-PA 1..274 1..274 1430 100 Plus