Clone Sequence Records
BO11650.3prime Sequence
884 bp (813 high quality bases) assembled on 2006-04-19
> BO11650.3prime
ATGGTCTAGAAAGCTTGCGACACGCGACTTGGGCGCCTCGCCCAGCATCT
GGGCCACATCGGCCACGCTGTCCGCATAGTAGTCCGGTATGCGCTGCGGA
TCCGTCTCGGCCAGGAGCTCCTCCTTGCTGCATCCGCCGCTGAGCACGAG
CAGCGTTTGGAATCCGCACTGGCGTCCAAAGCTAACGTCCTGGGCCAACA
TATCTCCGATCATGAGCACCCGACTGGGCTGAACGATTTGGTAATGCTCG
ACAAGCAGATCACCCAACTCGCGGCCAGGCTTGCCCAACGTAATCGGCTG
CTTGCCACTGGCCTCCACGAGGATGGAGGCGAAGGCTCCCGGACCTACGA
TGTTCACTTCCTTGGCCACCGGTAGCAGGCGATCGGTGGCGCCTTCAATG
AGCATACACTCCGGATGGCGCAGGTACAGGTGGGCGCGCAGAATCTTCGG
GGAAGTCAGATTGAAGTCCACGTCGATGATGACGGCGCGCACGGGCTCCT
TGCCAAAGATGTGCTCGGCCAGGCTGGCGTAGCTCTCCTCGATGAACTCG
TTGGGCCCGTCCAGGAGCTGGAATCCCGCCTCGCGCAACACCGTCTTGAA
CGACTGGCTGGCGATGATGTAGATGAGTCCCTCGAACTTGATGCTCTGCA
GATAGCTAACGATGGACTTGGCCGGATGCCAAATCTGCTCCGGGTGCACC
TGCATCCCGATCTTGGCGAAGAGTTTGACGCACTGCTCGGACGTGCGAAC
GCTGTTGTTGGTCAGGAAGGTCAGATGCTTGCCCATCTGCTCGAGAGCGG
CATATCCGTCGGCGGCACGCGGAATGCTCTGCTCAAAGGTCCACAGGACG
CCATCGATGTCGCTGAACACCCGGTCGAAAGAGT
BO11650.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15739-PA | 927 | CG15739-RA | 59..924 | 884..19 | 4305 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15739-RB | 1407 | CG15739-RB | 119..984 | 884..19 | 4315 | 99.9 | Minus |
CG15739-RA | 1529 | CG15739-RA | 241..1106 | 884..19 | 4315 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:31:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11874386..11874923 | 556..19 | 2690 | 100 | Minus |
X | 23542271 | X | 11873937..11874265 | 884..556 | 1630 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-03 17:31:16 has no hits.
BO11650.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:34 Download gff for
BO11650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-PA | 59..927 | 18..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:38:40 Download gff for
BO11650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-PA | 59..927 | 18..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:35:42 Download gff for
BO11650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-RA | 241..1106 | 19..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:02:26 Download gff for
BO11650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-RA | 241..1106 | 19..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:02:26 Download gff for
BO11650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11873937..11874265 | 556..884 | 99 | -> | Minus |
X | 11874387..11874923 | 19..555 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:35:42 Download gff for
BO11650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11767970..11768298 | 556..884 | 99 | -> | Minus |
arm_X | 11768420..11768956 | 19..555 | 100 | | Minus |
BO11650.5prime Sequence
857 bp (848 high quality bases) assembled on 2006-04-19
> BO11650.5prime
GAAGTTATCAGTCGACATGGCCAAACCCCAGCACATTTTGCAGCTAAGCC
AGGAGCAGCGGAGCAGCGTTGTCGACTCTTTCGACCGGGTGGTCAGCGAC
ATCGATGGCGTCCTGTGGACCTTTGAGCAGAGCATTCCGCGTGCCGCCGA
CGGATATGCCGCTCTCGAGCAGATGGGCAAGCATCTGACCTTCCTGACCA
ACAACAGCGTTCGCACGTCCGAGCAGTGCGTCAAACTCTTCGCCAAGATC
GGGATGCAGGTGCACCCGGAGCAGATTTGGCATCCGGCCAAGTCCATCGT
TAGCTATCTGCAGAGCATCAAGTTCGAGGGACTCATCTACATCATCGCCA
GCCAGTCGTTCAAGACGGTGTTGCGCGAGGCGGGATTCCAGCTCCTGGAC
GGGCCCAACGAGTTCATCGAGGAGAGCTACGCCAGCCTGGCCGAGCACAT
CTTTGGCAAGGAGCCCGTGCGCGCCGTCATCATCGACGTGGACTTCAATC
TGACTTCCCCGAAGATTCTGCGCGCCCACCTGTACCTGCGCCATCCGGAG
TGTATGCTCATTGAAGGCGCCACCGATCGCCTGCTACCGGTGGCCAAGGA
AGTGAACATCGTAGGTCCGGGAGCCTTCGCCTCCATCCTCGTGGAGGCCA
GTGGCAAGCAGCCGATTACGTTGGGCAAGCCTGGCCGCGAGTTGGGTGAT
CTGCTTGTCGAGCATTACCAAATCGTTCAGCCCAGTCGGGTGCTCATGAT
CGGAGATATGTTGGCCCAGGACGTTAGCTTTGGACGCCAGTGCGGATTCC
AAACGCTGCTCGTGCTCAGCGGCGGATGCAGCAAGGAGGAGCTCCTGGCC
GAGACGG
BO11650.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15739-PA | 927 | CG15739-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15739-RB | 1407 | CG15739-RB | 61..901 | 17..857 | 4205 | 100 | Plus |
CG15739-RA | 1529 | CG15739-RA | 183..1023 | 17..857 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:02:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11874386..11874840 | 403..857 | 2275 | 100 | Plus |
X | 23542271 | X | 11873881..11874265 | 19..403 | 1925 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:02:18 has no hits.
BO11650.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:35 Download gff for
BO11650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:38:41 Download gff for
BO11650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:49:57 Download gff for
BO11650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-RA | 183..1023 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:55:07 Download gff for
BO11650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-RA | 183..1023 | 17..857 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:55:07 Download gff for
BO11650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11873881..11874265 | 19..403 | 100 | -> | Plus |
X | 11874387..11874840 | 404..857 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:49:57 Download gff for
BO11650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11767914..11768298 | 19..403 | 100 | -> | Plus |
arm_X | 11768420..11768873 | 404..857 | 100 | | Plus |
BO11650.complete Sequence
958 bp assembled on 2006-10-11
GenBank Submission: FJ632144
> BO11650.complete
GAAGTTATCAGTCGACATGGCCAAACCCCAGCACATTTTGCAGCTAAGCC
AGGAGCAGCGGAGCAGCGTTGTCGACTCTTTCGACCGGGTGGTCAGCGAC
ATCGATGGCGTCCTGTGGACCTTTGAGCAGAGCATTCCGCGTGCCGCCGA
CGGATATGCCGCTCTCGAGCAGATGGGCAAGCATCTGACCTTCCTGACCA
ACAACAGCGTTCGCACGTCCGAGCAGTGCGTCAAACTCTTCGCCAAGATC
GGGATGCAGGTGCACCCGGAGCAGATTTGGCATCCGGCCAAGTCCATCGT
TAGCTATCTGCAGAGCATCAAGTTCGAGGGACTCATCTACATCATCGCCA
GCCAGTCGTTCAAGACGGTGTTGCGCGAGGCGGGATTCCAGCTCCTGGAC
GGGCCCAACGAGTTCATCGAGGAGAGCTACGCCAGCCTGGCCGAGCACAT
CTTTGGCAAGGAGCCCGTGCGCGCCGTCATCATCGACGTGGACTTCAATC
TGACTTCCCCGAAGATTCTGCGCGCCCACCTGTACCTGCGCCATCCGGAG
TGTATGCTCATTGAAGGCGCCACCGATCGCCTGCTACCGGTGGCCAAGGA
AGTGAACATCGTAGGTCCGGGAGCCTTCGCCTCCATCCTCGTGGAGGCCA
GTGGCAAGCAGCCGATTACGTTGGGCAAGCCTGGCCGCGAGTTGGGTGAT
CTGCTTGTCGAGCATTACCAAATCGTTCAGCCCAGTCGGGTGCTCATGAT
CGGAGATATGTTGGCCCAGGACGTTAGCTTTGGACGCCAGTGCGGATTCC
AAACGCTGCTCGTGCTCAGCGGCGGATGCAGCAAGGAGGAGCTCCTGGCC
GAGACGGATCCGCAGCGCATACCGGACTACTATGCGGACAGCGTGGCCGA
TGTGGCCCAGATGCTGGGCGAGGCGCCCAAGTCGCGTGTCGCAAGCTTTC
TAGACCAT
BO11650.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15739-RB | 927 | CG15739-PB | 1..924 | 17..940 | 4620 | 100 | Plus |
CG15739-RA | 927 | CG15739-PA | 1..924 | 17..940 | 4620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15739-RB | 1407 | CG15739-RB | 61..984 | 17..940 | 4620 | 100 | Plus |
CG15739-RA | 1529 | CG15739-RA | 183..1106 | 17..940 | 4620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11874386..11874923 | 403..940 | 2690 | 100 | Plus |
X | 23542271 | X | 11873881..11874265 | 19..403 | 1925 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:56:53 has no hits.
BO11650.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:08 Download gff for
BO11650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-RA | 1..927 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:16 Download gff for
BO11650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-RA | 59..982 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:29 Download gff for
BO11650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-RA | 183..1106 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:08 Download gff for
BO11650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-RA | 59..982 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:45 Download gff for
BO11650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15739-RA | 183..1106 | 17..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:45 Download gff for
BO11650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11873880..11874265 | 17..403 | 99 | -> | Plus |
X | 11874387..11874923 | 404..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:29 Download gff for
BO11650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11767913..11768298 | 17..403 | 99 | -> | Plus |
arm_X | 11768420..11768956 | 404..942 | 99 | | Plus |
BO11650.pep Sequence
Translation from 16 to 958
> BO11650.pep
MAKPQHILQLSQEQRSSVVDSFDRVVSDIDGVLWTFEQSIPRAADGYAAL
EQMGKHLTFLTNNSVRTSEQCVKLFAKIGMQVHPEQIWHPAKSIVSYLQS
IKFEGLIYIIASQSFKTVLREAGFQLLDGPNEFIEESYASLAEHIFGKEP
VRAVIIDVDFNLTSPKILRAHLYLRHPECMLIEGATDRLLPVAKEVNIVG
PGAFASILVEASGKQPITLGKPGRELGDLLVEHYQIVQPSRVLMIGDMLA
QDVSFGRQCGFQTLLVLSGGCSKEELLAETDPQRIPDYYADSVADVAQML
GEAPKSRVASFLDH
BO11650.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15739-PB | 308 | CG15739-PB | 1..308 | 1..308 | 1567 | 100 | Plus |
CG15739-PA | 308 | CG15739-PA | 1..308 | 1..308 | 1567 | 100 | Plus |
CG10352-PB | 315 | CG10352-PB | 1..299 | 1..297 | 641 | 44 | Plus |
CG2680-PB | 305 | CG2680-PB | 1..305 | 1..305 | 491 | 37.7 | Plus |
CG5567-PA | 330 | CG5567-PA | 23..318 | 6..296 | 378 | 30.9 | Plus |