Clone Sequence Records
BO11653.3prime Sequence
824 bp (721 high quality bases) assembled on 2006-04-19
> BO11653.3prime
ATGGTCTAGAAAGCTTGCTCCCATTGAGAAGAAGGACAACCGGAAGGCCA
TTTCGACTATGTTCTGGGGAACATCGGACCGGTGACACACGTACACTTCC
TTGGCTGGCGACTGAAAGAGACGACCAACCACCACGAAGCGACTGCTCGT
CGAGGATTGGGATTGCCCGTCCGACTTGGGTTGCGTGCTGACCTCCAGGA
TCATGCCGTGCTCCTTGACCAGCGACACTGTGTGGCTACTGTGCCCGTTC
GAGTTCGTCTGTGCTCTCGAGGATTCCGATAGATGCCTGCGATAGTGCTT
GGATTTCTGCAGCACGGCGTGGATTATGTGACACGCCTGACGAATCTCGG
AGAGGTAGTTGGAGTTCTCGGAGCTGTCGGTAAATGGCGCAAACAAGGAC
CCATTGGCTATGTCAATGTAGACGTAGTGCAGAACGGAATTCTTCCAGCC
AGCGGATATCTTGACCGGCACCACGTTGTTGATCTCCTTCCACATGGACT
CTGTCATTTGGCTCTGACTGTGGCTCTCGGCCCCGAGATTCAGTCCATAG
TGAAGTGGATGCTGTACGGCGAAGTTCTCCCAGTCGGAACCGCTGTCTGA
GTCCTCGGCAGTACCATGGATGGGGGTCAATCGCCTGCGACAGGACTCGT
CCTCACTGGGAGTCAGACTATGTATGGAAGACCCACCCAGGGACGAGCAC
AGTTGGGCTTCCTCCTCCACCGAAGGACTCAGCACGGTTAGCTTCTGCTT
GAGGAAGGACTCCAGTCGGTTGTTCGGCTCCTTCTCCTGATCTCTACTCT
CGCTGGCAGTGGCGTCCAGCACCT
BO11653.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16993-PA | 2610 | in-RA | 1802..2607 | 824..19 | 4030 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:43:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| in-RA | 3062 | CG16993-RA | 1920..2725 | 824..19 | 4030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:43:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20369117..20369922 | 824..19 | 4030 | 100 | Minus |
Blast to na_te.dros performed 2015-02-06 18:43:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gtwin | 7411 | gtwin GTWIN 7411bp | 2405..2433 | 489..461 | 109 | 86.2 | Minus |
BO11653.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:12:41 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:38:47 Download gff for
BO11653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16993-PA | 1802..2610 | 16..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:41:41 Download gff for
BO11653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| in-RA | 1920..2734 | 11..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:46:43 Download gff for
BO11653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| in-RA | 1920..2734 | 11..824 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:46:43 Download gff for
BO11653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20369117..20369931 | 11..824 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:41:41 Download gff for
BO11653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20362217..20363031 | 11..824 | 99 | | Minus |
BO11653.5prime Sequence
821 bp (759 high quality bases) assembled on 2006-04-19
> BO11653.5prime
GAAGTTATCAGTCGACATGCGCAAATCGCCGGCCAGCCTGCCGTCGGAGG
CCTTCTCCAGTTCGAACTCCTCGCTGAGCAACTCGTACAGCGATGGCAGC
GACCTGGCCAACTGGGAGGAGTACGTGTCCACAGACGGCAGTCTCTTCTA
CATGGAGTATGTGCGATGTGAGAAGACTGGCGTCTCGGCAGAGCGGCGGG
TGGAGTTCATGCGTCGATCGCTGCGCCTGGGAAAGAAGTCGTCGCGTCGC
CAGCCGCACAGCAATAATCAGAATCAGAGTCAGAACCAAAACCAGTCCCA
CGGCCCGAGCAGGTTGGATAGCCAGACGGAGCCGCAAGAGTTCCGCTTCT
CACAGTTCAAGACGGCTGCCCCCGATCCCAAGAAACTGGATCTGGTGATC
ACAGCCGCTGATCGCTTCCGTTTCGGACGACGATCCACGGCGGTGGAGTC
CATACTGGGCTTCCGGGTCCTGCCCTTTCCGGACCAACCAGAATGCCTGA
TGGTCGATGGGTTCGTTCACGATGTGAGTGCGCTGCAGCACGGCATCAAG
CGGGGAGATTGGTTTAGATCCCTGAATGGCATAGAGGTGTACGCCAGCAA
TGTGGATGAGTTGCTCAAGCAGTTCGTGGAGCCCACTCAGGTGTGCCTAG
GCTTCCAGTCGTGCGGTGCGGCCAGTGCAGTTTCGCCCACCGATCCGGGG
TATAATCGAAATGTCCGCGAGGAGCAGGTGTGCAAGGTGGAGAACTTTCC
CATGTTCACGGAGAAGTTTGAGCAGATGTTGATAACGGAGGGGAACTTCG
GTATTCCCGGTAGTTCCGTGG
BO11653.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16993-PA | 2610 | in-RA | 1..805 | 17..821 | 4025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:29:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| in-RA | 3062 | CG16993-RA | 119..923 | 17..821 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20367316..20368120 | 17..821 | 4025 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:29:51 has no hits.
BO11653.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:12:42 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:38:48 Download gff for
BO11653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16993-PA | 1..805 | 17..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:32:04 Download gff for
BO11653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| in-RA | 112..923 | 11..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:29:18 Download gff for
BO11653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| in-RA | 112..923 | 11..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:29:18 Download gff for
BO11653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20367309..20368120 | 11..821 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:32:04 Download gff for
BO11653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20360409..20361220 | 11..821 | 99 | | Plus |
BO11653.complete Sequence
2641 bp assembled on 2008-11-10
GenBank Submission: KX798276
> BO11653.complete
GAAGTTATCAGTCGACATGCGCAAATCGCCGGCCAGCCTGCCGTCGGAGG
CCTTCTCCAGTTCGAACTCCTCGCTGAGCAACTCGTACAGCGATGGCAGC
GACCTGGCCAACTGGGAGGAGTACGTGTCCACAGACGGCAGTCTCTTCTA
CATGGAGTATGTGCGATGTGAGAAGACTGGCGTCTCGGCAGAGCGGCGGG
TGGAGTTCATGCGTCGATCGCTGCGCCTGGGAAAGAAGTCGTCGCGTCGC
CAGCCGCACAGCAATAATCAGAATCAGAGTCAGAACCAAAACCAGTCCCA
CGGCCCGAGCAGGTTGGATAGCCAGACGGAGCCGCAAGAGTTCCGCTTCT
CACAGTTCAAGACGGCTGCCCCCGATCCCAAGAAACTGGATCTGGTGATC
ACAGCCGCTGATCGCTTCCGTTTCGGACGACGATCCACGGCGGTGGAGTC
CATACTGGGCTTCCGGGTCCTGCCCTTTCCGGACCAACCAGAATGCCTGA
TGGTCGATGGGTTCGTTCACGATGTGAGTGCGCTGCAGCACGGCATCAAG
CGGGGAGATTGGTTTAGATCCCTGAATGGCATAGAGGTGTACGCCAGCAA
TGTGGATGAGTTGCTCAAGCAGTTCGTGGAGCCCACTCAGGTGTGCCTAG
GCTTCCAGTCGTGCGGTGCGGCCAGTGCAGTTTCGCCCACCGATCCGGGG
TATAATCGAAATGTCCGCGAGGAGCAGGTGTGCAAGGTGGAGAACTTTCC
CATGTTCACGGAGAAGTTTGAGCAGATGTTGATAACGGAGGGGAACTTCG
GTATTCCCGGTAGTTCCGTGGACATAAGAATGCCCTTTGCTATGCTGCTA
CTCCCACCGGAGTGCTATCAGCATGAACAGCAACAGGATTCCCTCTACTA
CTTTCCGGAAATCCCCGACAACTTCCTATTCAAGGCCCGTGGGAGTTTCC
TCACCCTGCACGCCGTACTCAGTGAACTGCACACCCAGCCGCTGAGTTCA
AGGCTGCTGGTGGATCAGGTGCAATACCACGTCAACTACCGCCAACTGAA
TGGGTTCCTAGTCCTCTTCGCCTACGCCGGAGGACTCTGCTGTGCGGCGG
AGTGCAGCCTGCGATCGGATGAGCTAATCGGATACATACGCTTCTCTCTG
CCGGGCTTGGTCCTGGAGAGCTTTAATCAGGAGAGAGAGCCGGGGAATAG
TTCGAGACTGAAGCTGTTCCTTCGACACTTTTGCGAAATCCAGAGAACCC
GGCTCGTAGCCAGATGCCATGGTCATATTCGTTTCGAGGAGCTCCTGGGC
CAATCCCGCAGCCTGCCACTGCCAAAGGAAGCGCAGCTGCGCATCTTTGA
TGCTCTGAGTGAAATGGAGGCCATGGACTATCGCAACTGGAACGACGAGC
CACTCACCACCCATCGCGAGTTCTTCATCTACGGCAGTGCGCTGTACTAC
GATGGCTTCCTGGTGGCCAGCCTGCTGCCACCGGAAGTGAGGGTGAGTGT
AGAAGGATTCCTGCGCTGCCGCGGAATCTTCGAGTTGCTCGGAGCTGCTC
CGGGAATCAAAGTTCGCGAGATGTACGTGTGGGAGGAGATAGTGTTGCCC
AGTGCCACAGGGCGATATTTCCTTACCATCTGCACCAAGAACCACTTGAG
TCTGGCCGTGATCTTGAAGATCTTCGATGCTCCAGACATGGCGCCGGATG
CGGTGGTGGGTCCATCGCTCTTTTACATCGAGGAGATTCAAGAGACGCTG
GACCACCTAGTACAGTGCGGCATTGAATCCCTGGCCATGTTCTGGTCCGT
TTCCAATAAGAGACCCGAGGTGCTGGACGCCACTGCCAGCGAGAGTAGAG
ATCAGGAGAAGGAGCCGAACAACCGACTGGAGTCCTTCCTCAAGCAGAAG
CTAACCGTGCTGAGTCCTTCGGTGGAGGAGGAAGCCCAACTGTGCTCGTC
CCTGGGTGGGTCTTCCATACATAGTCTGACTCCCAGTGAGGACGAGTCCT
GTCGCAGGCGATTGACCCCCATCCATGGTACTGCCGAGGACTCAGACAGC
GGTTCCGACTGGGAGAACTTCGCCGTACAGCATCCACTTCACTATGGACT
GAATCTCGGGGCCGAGAGCCACAGTCAGAGCCAAATGACAGAGTCCATGT
GGAAGGAGATCAACAACGTGGTGCCGGTCAAGATATCCGCTGGCTGGAAG
AATTCCGTTCTGCACTACGTCTACATTGACATAGCCAATGGGTCCTTGTT
TGCGCCATTTACCGACAGCTCCGAGAACTCCAACTACCTCTCCGAGATTC
GTCAGGCGTGTCACATAATCCACGCCGTGCTGCAGAAATCCAAGCACTAT
CGCAGGCATCTATCGGAATCCTCGAGAGCACAGACGAACTCGAACGGGCA
CAGTAGCCACACAGTGTCGCTGGTCAAGGAGCACGGCATGATCCTGGAGG
TCAGCACGCAACCCAAGTCGGACGGGCAATCCCAATCCTCGACGAGCAGT
CGCTTCGTGGTGGTTGGTCGTCTCTTTCAGTCGCCAGCCAAGGAAGTGTA
CGTGTGTCACCGGTCCGATGTTCCCCAGAACATAGTCGAAATGGCCTTCC
GGTTGTCCTTCTTCTCAATGGGAGCAAGCTTTCTAGACCAT
BO11653.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:00:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| in-RA | 2610 | CG16993-PA | 1..2607 | 17..2623 | 13035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:00:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| in-RA | 3062 | CG16993-RA | 119..2725 | 17..2623 | 13035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:00:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20367316..20369922 | 17..2623 | 13035 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:00:12 has no hits.
BO11653.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:15:56 Download gff for
BO11653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| in-RA | 110..2732 | 11..2631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:24 Download gff for
BO11653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| in-RA | 119..2725 | 17..2625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:41 Download gff for
BO11653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| in-RA | 117..2723 | 17..2625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:34 Download gff for
BO11653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| in-RA | 119..2725 | 17..2625 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:34 Download gff for
BO11653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20367316..20369922 | 17..2625 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:24 Download gff for
BO11653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20360416..20363022 | 17..2625 | 99 | | Plus |
BO11653.pep Sequence
Translation from 16 to 2641
> BO11653.pep
MRKSPASLPSEAFSSSNSSLSNSYSDGSDLANWEEYVSTDGSLFYMEYVR
CEKTGVSAERRVEFMRRSLRLGKKSSRRQPHSNNQNQSQNQNQSHGPSRL
DSQTEPQEFRFSQFKTAAPDPKKLDLVITAADRFRFGRRSTAVESILGFR
VLPFPDQPECLMVDGFVHDVSALQHGIKRGDWFRSLNGIEVYASNVDELL
KQFVEPTQVCLGFQSCGAASAVSPTDPGYNRNVREEQVCKVENFPMFTEK
FEQMLITEGNFGIPGSSVDIRMPFAMLLLPPECYQHEQQQDSLYYFPEIP
DNFLFKARGSFLTLHAVLSELHTQPLSSRLLVDQVQYHVNYRQLNGFLVL
FAYAGGLCCAAECSLRSDELIGYIRFSLPGLVLESFNQEREPGNSSRLKL
FLRHFCEIQRTRLVARCHGHIRFEELLGQSRSLPLPKEAQLRIFDALSEM
EAMDYRNWNDEPLTTHREFFIYGSALYYDGFLVASLLPPEVRVSVEGFLR
CRGIFELLGAAPGIKVREMYVWEEIVLPSATGRYFLTICTKNHLSLAVIL
KIFDAPDMAPDAVVGPSLFYIEEIQETLDHLVQCGIESLAMFWSVSNKRP
EVLDATASESRDQEKEPNNRLESFLKQKLTVLSPSVEEEAQLCSSLGGSS
IHSLTPSEDESCRRRLTPIHGTAEDSDSGSDWENFAVQHPLHYGLNLGAE
SHSQSQMTESMWKEINNVVPVKISAGWKNSVLHYVYIDIANGSLFAPFTD
SSENSNYLSEIRQACHIIHAVLQKSKHYRRHLSESSRAQTNSNGHSSHTV
SLVKEHGMILEVSTQPKSDGQSQSSTSSRFVVVGRLFQSPAKEVYVCHRS
DVPQNIVEMAFRLSFFSMGASFLDH
BO11653.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| in-PA | 869 | CG16993-PA | 1..869 | 1..869 | 4528 | 100 | Plus |
