Clone Sequence Records
BO11658.3prime Sequence
870 bp (791 high quality bases) assembled on 2006-04-19
> BO11658.3prime
ATGGTCTAGAAAGCTTGCCATTGGAACGCGTCGCGCCAGCAGATACTCGG
AGAACTGCTGGCCCCCAACGCTGGCCTCGATGGTGAAGCCGGCGTTGAGG
AGTCGGGTGAGCACCTGCACCGAGTTCAGCTTGCAGTAGCCGTTGAGGGG
GAAGCGAATGATTTGCCCCCAGTCGCCCTGGTTCCAGGACACTCCGCTGC
GACTCGACTGTGTCGCTTGGCTGGCCTCCGGGAAGAGCTCGTCGAGCAGA
GCCCGTTCTGCCGACAGCATTATGCGTTCGCCAAGGTCTGGCGAGATGTG
CAGCGCCACTACCTCGTAATTGCACTCCGGCGATGCGCTGGTCCTCGGGC
TCGTCTTGATGTGGCGAGCCGGTGGAGTGGGTGGCGCCACCAAATAGTTG
CCATTGCGAACGCGATCCTTGCGCATGCTTTCCAGCTGCTTAATCATCGG
CTCCACTTCGTAGTAGCGAGCCTCCTCCAGCAGCAGCTCCAGGTCGGGAA
AATCCTCGGCAATCAGAAGTCTTGAGTTTCTCATAAAGTTCAGAATGTGG
CGGAACATGCCCCCGTCGCGATCGATGAAATAGTGCTGCTTCAGCGAGTC
CAGCACGATGGGTATCTGGCCATTGAAGAGCTTGGCCAGCTTCGACTCCG
GGTACTTGGTGAGCGTCTCCAGTGAGCTGGTGTAGATGGTCCCGCCCACG
TCGATGTGAACGGGCGCCGTATAGCGGGAGGCGGCGGCCACACACGGAAT
CCCGGTGATGGGCTTGTGGTTGCCGTGCAAATAGGAACTGGCCCCCGCCG
ATGAGGCTCCTCCGACGGCGGCGGCAGCAGCTGCCACCGCTCCGGGCAAG
CCCAGCGGCGTCACTGAGGA
BO11658.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10440-PA | 1017 | CG10440-RA | 163..1014 | 870..19 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10440-RB | 2451 | CG10440-RB | 685..1536 | 870..19 | 4260 | 100 | Minus |
CG10440-RA | 2350 | CG10440-RA | 584..1435 | 870..19 | 4260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21561161..21561591 | 19..449 | 2155 | 100 | Plus |
2R | 25286936 | 2R | 21561794..21562214 | 450..870 | 2105 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 18:56:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5 | 4856 | G5 G5_DM 4856bp | 3215..3273 | 416..355 | 113 | 69.4 | Minus |
BO11658.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:52 Download gff for
BO11658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-PA | 164..1017 | 16..869 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:01 Download gff for
BO11658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-PA | 164..1017 | 16..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:54:43 Download gff for
BO11658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-RA | 585..1435 | 19..869 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:33 Download gff for
BO11658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-RA | 585..1435 | 19..869 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:33 Download gff for
BO11658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21561161..21561591 | 19..449 | 100 | <- | Plus |
2R | 21561794..21562213 | 450..869 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:54:43 Download gff for
BO11658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17448666..17449096 | 19..449 | 100 | <- | Plus |
arm_2R | 17449299..17449718 | 450..869 | 100 | | Plus |
BO11658.5prime Sequence
868 bp (790 high quality bases) assembled on 2006-04-19
> BO11658.5prime
GAAGTTATCAGTCGACATGGACCGAGAGCGCGAAAGAGATGTCAAGGCCC
TGGAGCCACGCGACTTATCCTCCACGGGCCGCATTTACGCCAGAAGCGAT
ATTAAAATCAGCTCCTCGCCAACCGTCTCGCCAACGATCTCAAACTCCTC
TTCGCCCACACCGACGCCACCCGCCAGTTCCTCAGTGACGCCGCTGGGCT
TGCCCGGAGCGGTGGCAGCTGCTGCCGCCGCCGTCGGAGGAGCCTCATCG
GCGGGGGCCAGTTCCTATTTGCACGGCAACCACAAGCCCATCACCGGGAT
TCCGTGTGTGGCCGCCGCCTCCCGCTATACGGCGCCCGTTCACATCGACG
TGGGCGGGACCATCTACACCAGCTCACTGGAGACGCTCACCAAGTACCCG
GAGTCGAAGCTGGCCAAGCTCTTCAATGGCCAGATACCCATCGTGCTGGA
CTCGCTGAAGCAGCACTATTTCATCGATCGCGACGGGGGCATGTTCCGCC
ACATTCTGAACTTTATGAGAAACTCAAGACTTCTGATTGCCGAGGATTTT
CCCGACCTGGAGCTGCTGCTGGAGGAGGCTCGCTACTACGAAGTGGAGCC
GATGATTAAGCAGCTGGAAAGCATGCGCAAGGATCGCGTTCGCAATGGCA
ACTATTTGGTGGCGCCACCCACTCCACCGGCTCGCCACATCAAGACGAGC
CCGAGGACCAGCGCATCGCCGGAGTGCAATTACGAGGTAGTGGCGCTGCA
CATCTCGCCAGACCTTGGCGAACGCATAATGCTGTCGGCAGAACGGGCTC
TGCTCGACGAGCTCTTCCCGGAGGCCAGCCAAGCGAAACAGTCGAGTCGC
AGCGGAATGTCCTGGAAC
BO11658.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10440-PA | 1017 | CG10440-RA | 1..852 | 17..868 | 4210 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10440-RB | 2451 | CG10440-RB | 519..1374 | 13..868 | 4235 | 99.6 | Plus |
CG10440-RA | 2350 | CG10440-RA | 418..1273 | 13..868 | 4235 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21561794..21562284 | 599..109 | 2455 | 100 | Minus |
2R | 25286936 | 2R | 21561323..21561591 | 868..600 | 1315 | 99.3 | Minus |
2R | 25286936 | 2R | 21562544..21562642 | 111..13 | 480 | 99 | Minus |
Blast to na_te.dros performed 2015-02-13 01:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5 | 4856 | G5 G5_DM 4856bp | 3215..3273 | 633..694 | 113 | 69.4 | Plus |
BO11658.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:53 Download gff for
BO11658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:03 Download gff for
BO11658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:13:09 Download gff for
BO11658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-RA | 415..1273 | 7..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:52 Download gff for
BO11658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-RA | 415..1273 | 7..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:52 Download gff for
BO11658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21561323..21561591 | 600..868 | 99 | <- | Minus |
2R | 21561794..21562281 | 112..599 | 100 | <- | Minus |
2R | 21562544..21562645 | 7..111 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:13:09 Download gff for
BO11658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17448828..17449096 | 600..868 | 99 | <- | Minus |
arm_2R | 17449299..17449786 | 112..599 | 100 | <- | Minus |
arm_2R | 17450049..17450150 | 7..111 | 96 | | Minus |
BO11658.complete Sequence
1048 bp assembled on 2006-10-11
GenBank Submission: FJ632145
> BO11658.complete
GAAGTTATCAGTCGACATGGACCGAGAGCGCGAAAGAGATGTCAAGGCCC
TGGAGCCACGCGACTTATCCTCCACGGGCCGCATTTACGCCAGAAGCGAT
ATTAAAATCAGCTCCTCGCCAACCGTCTCGCCAACGATCTCAAACTCCTC
TTCGCCCACACCGACGCCACCCGCCAGTTCCTCAGTGACGCCGCTGGGCT
TGCCCGGAGCGGTGGCAGCTGCTGCCGCCGCCGTCGGAGGAGCCTCATCG
GCGGGGGCCAGTTCCTATTTGCACGGCAACCACAAGCCCATCACCGGGAT
TCCGTGTGTGGCCGCCGCCTCCCGCTATACGGCGCCCGTTCACATCGACG
TGGGCGGGACCATCTACACCAGCTCACTGGAGACGCTCACCAAGTACCCG
GAGTCGAAGCTGGCCAAGCTCTTCAATGGCCAGATACCCATCGTGCTGGA
CTCGCTGAAGCAGCACTATTTCATCGATCGCGACGGGGGCATGTTCCGCC
ACATTCTGAACTTTATGAGAAACTCAAGACTTCTGATTGCCGAGGATTTT
CCCGACCTGGAGCTGCTGCTGGAGGAGGCTCGCTACTACGAAGTGGAGCC
GATGATTAAGCAGCTGGAAAGCATGCGCAAGGATCGCGTTCGCAATGGCA
ACTATTTGGTGGCGCCACCCACTCCACCGGCTCGCCACATCAAGACGAGC
CCGAGGACCAGCGCATCGCCGGAGTGCAATTACGAGGTAGTGGCGCTGCA
CATCTCGCCAGACCTTGGCGAACGCATAATGCTGTCGGCAGAACGGGCTC
TGCTCGACGAGCTCTTCCCGGAGGCCAGCCAAGCGACACAGTCGAGTCGC
AGCGGAGTGTCCTGGAACCAGGGCGACTGGGGGCAAATCATTCGCTTCCC
CCTCAACGGCTACTGCAAGCTGAACTCGGTGCAGGTGCTCACCCGACTCC
TCAACGCCGGCTTCACCATCGAGGCCAGCGTTGGGGGCCAGCAGTTCTCC
GAGTATCTGCTGGCGCGACGCGTTCCAATGGCAAGCTTTCTAGACCAT
BO11658.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10440-RB | 1104 | CG10440-PB | 84..1101 | 13..1030 | 5075 | 99.9 | Plus |
CG10440-RA | 1017 | CG10440-PA | 1..1014 | 17..1030 | 5070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10440-RB | 2451 | CG10440-RB | 519..1536 | 13..1030 | 5075 | 99.9 | Plus |
CG10440-RA | 2350 | CG10440-RA | 418..1435 | 13..1030 | 5075 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:50:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21561794..21562284 | 599..109 | 2455 | 100 | Minus |
2R | 25286936 | 2R | 21561161..21561591 | 1030..600 | 2155 | 100 | Minus |
2R | 25286936 | 2R | 21562544..21562642 | 111..13 | 480 | 99 | Minus |
Blast to na_te.dros performed 2014-11-28 00:50:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5 | 4856 | G5 G5_DM 4856bp | 3215..3273 | 633..694 | 113 | 69.4 | Plus |
BO11658.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:09 Download gff for
BO11658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-RA | 1..1017 | 17..1033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:18 Download gff for
BO11658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-RA | 413..1433 | 7..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:40 Download gff for
BO11658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-RA | 422..1435 | 17..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:09 Download gff for
BO11658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-RA | 413..1433 | 7..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:33 Download gff for
BO11658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10440-RA | 422..1435 | 17..1032 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:33 Download gff for
BO11658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21561158..21561591 | 600..1032 | 99 | <- | Minus |
2R | 21561794..21562281 | 112..599 | 100 | <- | Minus |
2R | 21562544..21562638 | 17..111 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:40 Download gff for
BO11658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17448663..17449096 | 600..1032 | 99 | <- | Minus |
arm_2R | 17449299..17449786 | 112..599 | 100 | <- | Minus |
arm_2R | 17450049..17450143 | 17..111 | 100 | | Minus |
BO11658.pep Sequence
Translation from 16 to 1048
> BO11658.pep
MDRERERDVKALEPRDLSSTGRIYARSDIKISSSPTVSPTISNSSSPTPT
PPASSSVTPLGLPGAVAAAAAAVGGASSAGASSYLHGNHKPITGIPCVAA
ASRYTAPVHIDVGGTIYTSSLETLTKYPESKLAKLFNGQIPIVLDSLKQH
YFIDRDGGMFRHILNFMRNSRLLIAEDFPDLELLLEEARYYEVEPMIKQL
ESMRKDRVRNGNYLVAPPTPPARHIKTSPRTSASPECNYEVVALHISPDL
GERIMLSAERALLDELFPEASQATQSSRSGVSWNQGDWGQIIRFPLNGYC
KLNSVQVLTRLLNAGFTIEASVGGQQFSEYLLARRVPMASFLDH
BO11658.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10440-PA | 338 | CG10440-PA | 1..338 | 1..338 | 1727 | 100 | Plus |
CG10440-PB | 367 | CG10440-PB | 30..367 | 1..338 | 1727 | 100 | Plus |
CG10830-PA | 228 | CG10830-PA | 5..104 | 108..207 | 172 | 38.6 | Plus |