Clone BO11658 Report

Search the DGRC for BO11658

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG10440-RA
Protein status:BO11658.pep: validated full length
Sequenced Size:1048

Clone Sequence Records

BO11658.3prime Sequence

870 bp (791 high quality bases) assembled on 2006-04-19

> BO11658.3prime
ATGGTCTAGAAAGCTTGCCATTGGAACGCGTCGCGCCAGCAGATACTCGG
AGAACTGCTGGCCCCCAACGCTGGCCTCGATGGTGAAGCCGGCGTTGAGG
AGTCGGGTGAGCACCTGCACCGAGTTCAGCTTGCAGTAGCCGTTGAGGGG
GAAGCGAATGATTTGCCCCCAGTCGCCCTGGTTCCAGGACACTCCGCTGC
GACTCGACTGTGTCGCTTGGCTGGCCTCCGGGAAGAGCTCGTCGAGCAGA
GCCCGTTCTGCCGACAGCATTATGCGTTCGCCAAGGTCTGGCGAGATGTG
CAGCGCCACTACCTCGTAATTGCACTCCGGCGATGCGCTGGTCCTCGGGC
TCGTCTTGATGTGGCGAGCCGGTGGAGTGGGTGGCGCCACCAAATAGTTG
CCATTGCGAACGCGATCCTTGCGCATGCTTTCCAGCTGCTTAATCATCGG
CTCCACTTCGTAGTAGCGAGCCTCCTCCAGCAGCAGCTCCAGGTCGGGAA
AATCCTCGGCAATCAGAAGTCTTGAGTTTCTCATAAAGTTCAGAATGTGG
CGGAACATGCCCCCGTCGCGATCGATGAAATAGTGCTGCTTCAGCGAGTC
CAGCACGATGGGTATCTGGCCATTGAAGAGCTTGGCCAGCTTCGACTCCG
GGTACTTGGTGAGCGTCTCCAGTGAGCTGGTGTAGATGGTCCCGCCCACG
TCGATGTGAACGGGCGCCGTATAGCGGGAGGCGGCGGCCACACACGGAAT
CCCGGTGATGGGCTTGTGGTTGCCGTGCAAATAGGAACTGGCCCCCGCCG
ATGAGGCTCCTCCGACGGCGGCGGCAGCAGCTGCCACCGCTCCGGGCAAG
CCCAGCGGCGTCACTGAGGA

BO11658.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10440-PA 1017 CG10440-RA 163..1014 870..19 4260 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG10440-RB 2451 CG10440-RB 685..1536 870..19 4260 100 Minus
CG10440-RA 2350 CG10440-RA 584..1435 870..19 4260 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21561161..21561591 19..449 2155 100 Plus
2R 25286936 2R 21561794..21562214 450..870 2105 100 Plus
Blast to na_te.dros performed 2015-02-10 18:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 3215..3273 416..355 113 69.4 Minus

BO11658.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:52 Download gff for BO11658.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10440-PA 164..1017 16..869 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:01 Download gff for BO11658.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10440-PA 164..1017 16..869 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:54:43 Download gff for BO11658.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 585..1435 19..869 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:33 Download gff for BO11658.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 585..1435 19..869 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:33 Download gff for BO11658.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21561161..21561591 19..449 100 <- Plus
2R 21561794..21562213 450..869 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:54:43 Download gff for BO11658.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17448666..17449096 19..449 100 <- Plus
arm_2R 17449299..17449718 450..869 100   Plus

BO11658.5prime Sequence

868 bp (790 high quality bases) assembled on 2006-04-19

> BO11658.5prime
GAAGTTATCAGTCGACATGGACCGAGAGCGCGAAAGAGATGTCAAGGCCC
TGGAGCCACGCGACTTATCCTCCACGGGCCGCATTTACGCCAGAAGCGAT
ATTAAAATCAGCTCCTCGCCAACCGTCTCGCCAACGATCTCAAACTCCTC
TTCGCCCACACCGACGCCACCCGCCAGTTCCTCAGTGACGCCGCTGGGCT
TGCCCGGAGCGGTGGCAGCTGCTGCCGCCGCCGTCGGAGGAGCCTCATCG
GCGGGGGCCAGTTCCTATTTGCACGGCAACCACAAGCCCATCACCGGGAT
TCCGTGTGTGGCCGCCGCCTCCCGCTATACGGCGCCCGTTCACATCGACG
TGGGCGGGACCATCTACACCAGCTCACTGGAGACGCTCACCAAGTACCCG
GAGTCGAAGCTGGCCAAGCTCTTCAATGGCCAGATACCCATCGTGCTGGA
CTCGCTGAAGCAGCACTATTTCATCGATCGCGACGGGGGCATGTTCCGCC
ACATTCTGAACTTTATGAGAAACTCAAGACTTCTGATTGCCGAGGATTTT
CCCGACCTGGAGCTGCTGCTGGAGGAGGCTCGCTACTACGAAGTGGAGCC
GATGATTAAGCAGCTGGAAAGCATGCGCAAGGATCGCGTTCGCAATGGCA
ACTATTTGGTGGCGCCACCCACTCCACCGGCTCGCCACATCAAGACGAGC
CCGAGGACCAGCGCATCGCCGGAGTGCAATTACGAGGTAGTGGCGCTGCA
CATCTCGCCAGACCTTGGCGAACGCATAATGCTGTCGGCAGAACGGGCTC
TGCTCGACGAGCTCTTCCCGGAGGCCAGCCAAGCGAAACAGTCGAGTCGC
AGCGGAATGTCCTGGAAC

BO11658.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10440-PA 1017 CG10440-RA 1..852 17..868 4210 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10440-RB 2451 CG10440-RB 519..1374 13..868 4235 99.6 Plus
CG10440-RA 2350 CG10440-RA 418..1273 13..868 4235 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21561794..21562284 599..109 2455 100 Minus
2R 25286936 2R 21561323..21561591 868..600 1315 99.3 Minus
2R 25286936 2R 21562544..21562642 111..13 480 99 Minus
Blast to na_te.dros performed 2015-02-13 01:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 3215..3273 633..694 113 69.4 Plus

BO11658.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:53 Download gff for BO11658.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10440-PA 1..852 17..868 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:03 Download gff for BO11658.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10440-PA 1..852 17..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:13:09 Download gff for BO11658.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 415..1273 7..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:52 Download gff for BO11658.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 415..1273 7..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:52 Download gff for BO11658.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21561323..21561591 600..868 99 <- Minus
2R 21561794..21562281 112..599 100 <- Minus
2R 21562544..21562645 7..111 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:13:09 Download gff for BO11658.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17448828..17449096 600..868 99 <- Minus
arm_2R 17449299..17449786 112..599 100 <- Minus
arm_2R 17450049..17450150 7..111 96   Minus

BO11658.complete Sequence

1048 bp assembled on 2006-10-11

GenBank Submission: FJ632145

> BO11658.complete
GAAGTTATCAGTCGACATGGACCGAGAGCGCGAAAGAGATGTCAAGGCCC
TGGAGCCACGCGACTTATCCTCCACGGGCCGCATTTACGCCAGAAGCGAT
ATTAAAATCAGCTCCTCGCCAACCGTCTCGCCAACGATCTCAAACTCCTC
TTCGCCCACACCGACGCCACCCGCCAGTTCCTCAGTGACGCCGCTGGGCT
TGCCCGGAGCGGTGGCAGCTGCTGCCGCCGCCGTCGGAGGAGCCTCATCG
GCGGGGGCCAGTTCCTATTTGCACGGCAACCACAAGCCCATCACCGGGAT
TCCGTGTGTGGCCGCCGCCTCCCGCTATACGGCGCCCGTTCACATCGACG
TGGGCGGGACCATCTACACCAGCTCACTGGAGACGCTCACCAAGTACCCG
GAGTCGAAGCTGGCCAAGCTCTTCAATGGCCAGATACCCATCGTGCTGGA
CTCGCTGAAGCAGCACTATTTCATCGATCGCGACGGGGGCATGTTCCGCC
ACATTCTGAACTTTATGAGAAACTCAAGACTTCTGATTGCCGAGGATTTT
CCCGACCTGGAGCTGCTGCTGGAGGAGGCTCGCTACTACGAAGTGGAGCC
GATGATTAAGCAGCTGGAAAGCATGCGCAAGGATCGCGTTCGCAATGGCA
ACTATTTGGTGGCGCCACCCACTCCACCGGCTCGCCACATCAAGACGAGC
CCGAGGACCAGCGCATCGCCGGAGTGCAATTACGAGGTAGTGGCGCTGCA
CATCTCGCCAGACCTTGGCGAACGCATAATGCTGTCGGCAGAACGGGCTC
TGCTCGACGAGCTCTTCCCGGAGGCCAGCCAAGCGACACAGTCGAGTCGC
AGCGGAGTGTCCTGGAACCAGGGCGACTGGGGGCAAATCATTCGCTTCCC
CCTCAACGGCTACTGCAAGCTGAACTCGGTGCAGGTGCTCACCCGACTCC
TCAACGCCGGCTTCACCATCGAGGCCAGCGTTGGGGGCCAGCAGTTCTCC
GAGTATCTGCTGGCGCGACGCGTTCCAATGGCAAGCTTTCTAGACCAT

BO11658.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10440-RB 1104 CG10440-PB 84..1101 13..1030 5075 99.9 Plus
CG10440-RA 1017 CG10440-PA 1..1014 17..1030 5070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10440-RB 2451 CG10440-RB 519..1536 13..1030 5075 99.9 Plus
CG10440-RA 2350 CG10440-RA 418..1435 13..1030 5075 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21561794..21562284 599..109 2455 100 Minus
2R 25286936 2R 21561161..21561591 1030..600 2155 100 Minus
2R 25286936 2R 21562544..21562642 111..13 480 99 Minus
Blast to na_te.dros performed 2014-11-28 00:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 3215..3273 633..694 113 69.4 Plus

BO11658.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:09 Download gff for BO11658.complete
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 1..1017 17..1033 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:18 Download gff for BO11658.complete
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 413..1433 7..1030 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:40 Download gff for BO11658.complete
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 422..1435 17..1032 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:09 Download gff for BO11658.complete
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 413..1433 7..1030 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:33 Download gff for BO11658.complete
Subject Subject Range Query Range Percent Splice Strand
CG10440-RA 422..1435 17..1032 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:33 Download gff for BO11658.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21561158..21561591 600..1032 99 <- Minus
2R 21561794..21562281 112..599 100 <- Minus
2R 21562544..21562638 17..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:40 Download gff for BO11658.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17448663..17449096 600..1032 99 <- Minus
arm_2R 17449299..17449786 112..599 100 <- Minus
arm_2R 17450049..17450143 17..111 100   Minus

BO11658.pep Sequence

Translation from 16 to 1048

> BO11658.pep
MDRERERDVKALEPRDLSSTGRIYARSDIKISSSPTVSPTISNSSSPTPT
PPASSSVTPLGLPGAVAAAAAAVGGASSAGASSYLHGNHKPITGIPCVAA
ASRYTAPVHIDVGGTIYTSSLETLTKYPESKLAKLFNGQIPIVLDSLKQH
YFIDRDGGMFRHILNFMRNSRLLIAEDFPDLELLLEEARYYEVEPMIKQL
ESMRKDRVRNGNYLVAPPTPPARHIKTSPRTSASPECNYEVVALHISPDL
GERIMLSAERALLDELFPEASQATQSSRSGVSWNQGDWGQIIRFPLNGYC
KLNSVQVLTRLLNAGFTIEASVGGQQFSEYLLARRVPMASFLDH

BO11658.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10440-PA 338 CG10440-PA 1..338 1..338 1727 100 Plus
CG10440-PB 367 CG10440-PB 30..367 1..338 1727 100 Plus
CG10830-PA 228 CG10830-PA 5..104 108..207 172 38.6 Plus