Clone Sequence Records
BO11662.3prime Sequence
845 bp (790 high quality bases) assembled on 2006-04-19
> BO11662.3prime
ATGGTCTAGAAAGCTTGCACCCTGCTTCTGGGCAAGCTCGCGTGCCTTGG
CGCGCTCCAGCTTAGAGATGCGGGCCAGACTCTTGGAGCCAAGGATACCA
CCGCCCCAGTGGCGACGGATCTCCTCGTGGCGCTCGTTGAAGTTGGTCTT
CACAGCCTCCAGGACCTTGCCGAAGTTGGCCTTGTCGTTGTTATCGACGG
TGGTCAGGGCGAGGGTGGTGCAGGTCTTGCGACGCACCAGGCGACCCAGA
CGAGCCTTACCCTTCACAATGCAGTAGGGCACGCCCATCTTGCGGCACAG
GGCGGGCAGGAAGAGCACCAGCTCCAGAGGATCAACATCGTGGGCAATGA
CCACCAGTTGGGCCTTCTTCTGCTCGATCAGCTTGGTCACCGTGTTGGTA
CCGGCGGACACATAGCTGGGCTTCTTCTTGGGCTCCACATCCTTGCCCTT
GGCCTTAGCCTCGGCGATCTTCTTCAGGCGCAGCTTCTTGGCCAGCGGCG
ACTCGGGGCGGTACTTCTCCAGCAGCTTGAACAGCTTCACGGCGGTGGTC
TTGTCCAGAGTCTGGCTGAACTGGTGGATTGGTGGTGGGACCTTCAGGCG
CTTCTGGAGCACAGCCTTTTGACGCTGCACCCGGATGTATTTGGGCCAGC
GAACGAAACGGGACAGATCGCGCTTGGGCTGCACATTCTGGCCGATTCCG
AAGTTCTTGGGACGCTTCTCGAACAGCTGGTTAACAACCTTCTTGACCAC
GGGCTTCTTGACAGCCAGAGGAGCGGGAGCCACCTTCTTGGTCACTGGCT
TCTTCTTTGGCCTGGGCTTCTTGACAACCATGTCGACTGATAACT
BO11662.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3314-PA | 816 | RpL7A-RA | 1..813 | 831..19 | 4065 | 100 | Minus |
CG3314-PD | 816 | RpL7A-RD | 1..813 | 831..19 | 4065 | 100 | Minus |
CG3314-PC | 816 | RpL7A-RC | 1..813 | 831..19 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:06:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL7A-RG | 971 | CG3314-RG | 46..858 | 831..19 | 4065 | 100 | Minus |
RpL7A-RF | 1130 | CG3314-RF | 86..898 | 831..19 | 4065 | 100 | Minus |
RpL7A-RE | 1011 | CG3314-RE | 86..898 | 831..19 | 4065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:06:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6531835..6532206 | 322..693 | 1860 | 100 | Plus |
X | 23542271 | X | 6531129..6531433 | 19..323 | 1525 | 100 | Plus |
X | 23542271 | X | 6532297..6532423 | 692..818 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 20:06:52 has no hits.
BO11662.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:57 Download gff for
BO11662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7A-PC | 1..816 | 16..831 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:09 Download gff for
BO11662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3314-PC | 1..816 | 16..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:36:20 Download gff for
BO11662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7A-RD | 175..987 | 19..831 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:49:07 Download gff for
BO11662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7A-RE | 86..898 | 19..831 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:49:07 Download gff for
BO11662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6531129..6531431 | 19..321 | 100 | <- | Plus |
X | 6531835..6532205 | 322..692 | 100 | <- | Plus |
X | 6532298..6532421 | 693..816 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:36:20 Download gff for
BO11662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6426331..6426454 | 693..816 | 100 | <- | Plus |
arm_X | 6425162..6425464 | 19..321 | 100 | <- | Plus |
arm_X | 6425868..6426238 | 322..692 | 100 | <- | Plus |
BO11662.5prime Sequence
845 bp (758 high quality bases) assembled on 2006-04-19
> BO11662.5prime
GAAGTTATCAGTCGACATGGTTGTCAAGAAGCCCAGGCCAAAGAAGAAGC
CAGTGACCAAGAAGGTGGCTCCCGCTCCTCTGGCTGTCAAGAAGCCCGTG
GTCAAGAAGGTTGTTAACCAGCTGTTCGAGAAGCGTCCCAAGAACTTCGG
AATCGGCCAGAATGTGCAGCCCAAGCGCGATCTGTCCCGTTTCGTTCGCT
GGCCCAAATACATCCGGGTGCAGCGTCAAAAGGCTGTGCTCCAGAAGCGC
CTGAAGGTCCCACCACCAATCCACCAGTTCAGCCAGACTCTGGACAAGAC
CACCGCCGTGAAGCTGTTCAAGCTGCTGGAGAAGTACCGCCCCGAGTCGC
CGCTGGCCAAGAAGCTGCGCCTGAAGAAGATCGCCGAGGCTAAGGCCAAG
GGCAAGGATGTGGAGCCCAAGAAGAAGCCCAGCTATGTGTCCGCCGGTAC
CAACACGGTGACCAAGCTGATCGAGCAGAAGAAGGCCCAACTGGTGGTCA
TTGCCCACGATGTTGATCCTCTGGAGCTGGTGCTCTTCCTGCCCGCCCTG
TGCCGCAAGATGGGCGTGCCCTACTGCATTGTGAAGGGTAAGGCTCGTCT
GGGTCGCCTGGTGCGTCGCAAGACCTGCACCACCCTCGCCCTGACCACCG
TCGATAACAACGACAAGGCCAACTTCGGCAAGGTCCTGGAGGCTGTGAAG
ACCAACTTCAACGAGCGCCACGAGGAGATCCGTCGCCACTGGGGCGGTGG
TATCCTTGGCTCCAAGAGTCTGGCCCGCATCTCTAAGCTGGAGCGCGCCA
AGGCACGCGAGCTTGCCCAGAAGCAGGGTGCAAGCTTTCTAGACC
BO11662.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3314-PA | 816 | RpL7A-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
CG3314-PD | 816 | RpL7A-RD | 1..813 | 17..829 | 4065 | 100 | Plus |
CG3314-PC | 816 | RpL7A-RC | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL7A-RG | 971 | CG3314-RG | 46..858 | 17..829 | 4065 | 100 | Plus |
RpL7A-RF | 1130 | CG3314-RF | 86..898 | 17..829 | 4065 | 100 | Plus |
RpL7A-RE | 1011 | CG3314-RE | 86..898 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6531835..6532206 | 526..155 | 1860 | 100 | Minus |
X | 23542271 | X | 6531129..6531433 | 829..525 | 1525 | 100 | Minus |
X | 23542271 | X | 6532297..6532423 | 156..30 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:10:45 has no hits.
BO11662.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:58 Download gff for
BO11662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7A-PC | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:11 Download gff for
BO11662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3314-PC | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:56:17 Download gff for
BO11662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7A-RD | 175..987 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:27:55 Download gff for
BO11662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7A-RE | 86..898 | 17..829 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:27:55 Download gff for
BO11662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6531129..6531431 | 527..829 | 100 | <- | Minus |
X | 6531835..6532205 | 156..526 | 100 | <- | Minus |
X | 6532298..6532421 | 32..155 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:56:17 Download gff for
BO11662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6426331..6426454 | 32..155 | 100 | <- | Minus |
arm_X | 6425162..6425464 | 527..829 | 100 | <- | Minus |
arm_X | 6425868..6426238 | 156..526 | 100 | <- | Minus |
BO11662.complete Sequence
847 bp assembled on 2006-10-11
GenBank Submission: FJ632146
> BO11662.complete
GAAGTTATCAGTCGACATGGTTGTCAAGAAGCCCAGGCCAAAGAAGAAGC
CAGTGACCAAGAAGGTGGCTCCCGCTCCTCTGGCTGTCAAGAAGCCCGTG
GTCAAGAAGGTTGTTAACCAGCTGTTCGAGAAGCGTCCCAAGAACTTCGG
AATCGGCCAGAATGTGCAGCCCAAGCGCGATCTGTCCCGTTTCGTTCGCT
GGCCCAAATACATCCGGGTGCAGCGTCAAAAGGCTGTGCTCCAGAAGCGC
CTGAAGGTCCCACCACCAATCCACCAGTTCAGCCAGACTCTGGACAAGAC
CACCGCCGTGAAGCTGTTCAAGCTGCTGGAGAAGTACCGCCCCGAGTCGC
CGCTGGCCAAGAAGCTGCGCCTGAAGAAGATCGCCGAGGCTAAGGCCAAG
GGCAAGGATGTGGAGCCCAAGAAGAAGCCCAGCTATGTGTCCGCCGGTAC
CAACACGGTGACCAAGCTGATCGAGCAGAAGAAGGCCCAACTGGTGGTCA
TTGCCCACGATGTTGATCCTCTGGAGCTGGTGCTCTTCCTGCCCGCCCTG
TGCCGCAAGATGGGCGTGCCCTACTGCATTGTGAAGGGTAAGGCTCGTCT
GGGTCGCCTGGTGCGTCGCAAGACCTGCACCACCCTCGCCCTGACCACCG
TCGATAACAACGACAAGGCCAACTTCGGCAAGGTCCTGGAGGCTGTGAAG
ACCAACTTCAACGAGCGCCACGAGGAGATCCGTCGCCACTGGGGCGGTGG
TATCCTTGGCTCCAAGAGTCTGGCCCGCATCTCTAAGCTGGAGCGCGCCA
AGGCACGCGAGCTTGCCCAGAAGCAGGGTGCAAGCTTTCTAGACCAT
BO11662.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:25:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL7A-RG | 816 | CG3314-PG | 1..813 | 17..829 | 4065 | 100 | Plus |
RpL7A-RF | 816 | CG3314-PF | 1..813 | 17..829 | 4065 | 100 | Plus |
RpL7A-RE | 816 | CG3314-PE | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL7A-RG | 971 | CG3314-RG | 46..858 | 17..829 | 4065 | 100 | Plus |
RpL7A-RF | 1130 | CG3314-RF | 86..898 | 17..829 | 4065 | 100 | Plus |
RpL7A-RE | 1011 | CG3314-RE | 86..898 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6531835..6532206 | 526..155 | 1860 | 100 | Minus |
X | 23542271 | X | 6531129..6531433 | 829..525 | 1525 | 100 | Minus |
X | 23542271 | X | 6532297..6532423 | 156..30 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:25:49 has no hits.
BO11662.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:18 Download gff for
BO11662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7A-RC | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:12:25 Download gff for
BO11662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7A-RC | 44..856 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:51 Download gff for
BO11662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7A-RD | 175..987 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:18 Download gff for
BO11662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7A-RC | 44..856 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:20 Download gff for
BO11662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7A-RE | 86..898 | 17..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:20 Download gff for
BO11662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6531126..6531431 | 527..831 | 99 | <- | Minus |
X | 6531835..6532205 | 156..526 | 100 | <- | Minus |
X | 6532298..6532421 | 32..155 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:51 Download gff for
BO11662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6425159..6425464 | 527..831 | 99 | <- | Minus |
arm_X | 6425868..6426238 | 156..526 | 100 | <- | Minus |
arm_X | 6426331..6426454 | 32..155 | 100 | <- | Minus |
BO11662.pep Sequence
Translation from 16 to 847
> BO11662.pep
MVVKKPRPKKKPVTKKVAPAPLAVKKPVVKKVVNQLFEKRPKNFGIGQNV
QPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKL
FKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTK
LIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVR
RKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGSK
SLARISKLERAKARELAQKQGASFLDH
BO11662.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL7A-PG | 271 | CG3314-PG | 1..271 | 1..271 | 1379 | 100 | Plus |
RpL7A-PF | 271 | CG3314-PF | 1..271 | 1..271 | 1379 | 100 | Plus |
RpL7A-PE | 271 | CG3314-PE | 1..271 | 1..271 | 1379 | 100 | Plus |
RpL7A-PD | 271 | CG3314-PD | 1..271 | 1..271 | 1379 | 100 | Plus |
RpL7A-PA | 271 | CG3314-PA | 1..271 | 1..271 | 1379 | 100 | Plus |