Clone BO11662 Report

Search the DGRC for BO11662

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptRpL7A-RA
Protein status:BO11662.pep: validated full length
Sequenced Size:847

Clone Sequence Records

BO11662.3prime Sequence

845 bp (790 high quality bases) assembled on 2006-04-19

> BO11662.3prime
ATGGTCTAGAAAGCTTGCACCCTGCTTCTGGGCAAGCTCGCGTGCCTTGG
CGCGCTCCAGCTTAGAGATGCGGGCCAGACTCTTGGAGCCAAGGATACCA
CCGCCCCAGTGGCGACGGATCTCCTCGTGGCGCTCGTTGAAGTTGGTCTT
CACAGCCTCCAGGACCTTGCCGAAGTTGGCCTTGTCGTTGTTATCGACGG
TGGTCAGGGCGAGGGTGGTGCAGGTCTTGCGACGCACCAGGCGACCCAGA
CGAGCCTTACCCTTCACAATGCAGTAGGGCACGCCCATCTTGCGGCACAG
GGCGGGCAGGAAGAGCACCAGCTCCAGAGGATCAACATCGTGGGCAATGA
CCACCAGTTGGGCCTTCTTCTGCTCGATCAGCTTGGTCACCGTGTTGGTA
CCGGCGGACACATAGCTGGGCTTCTTCTTGGGCTCCACATCCTTGCCCTT
GGCCTTAGCCTCGGCGATCTTCTTCAGGCGCAGCTTCTTGGCCAGCGGCG
ACTCGGGGCGGTACTTCTCCAGCAGCTTGAACAGCTTCACGGCGGTGGTC
TTGTCCAGAGTCTGGCTGAACTGGTGGATTGGTGGTGGGACCTTCAGGCG
CTTCTGGAGCACAGCCTTTTGACGCTGCACCCGGATGTATTTGGGCCAGC
GAACGAAACGGGACAGATCGCGCTTGGGCTGCACATTCTGGCCGATTCCG
AAGTTCTTGGGACGCTTCTCGAACAGCTGGTTAACAACCTTCTTGACCAC
GGGCTTCTTGACAGCCAGAGGAGCGGGAGCCACCTTCTTGGTCACTGGCT
TCTTCTTTGGCCTGGGCTTCTTGACAACCATGTCGACTGATAACT

BO11662.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3314-PA 816 RpL7A-RA 1..813 831..19 4065 100 Minus
CG3314-PD 816 RpL7A-RD 1..813 831..19 4065 100 Minus
CG3314-PC 816 RpL7A-RC 1..813 831..19 4065 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
RpL7A-RG 971 CG3314-RG 46..858 831..19 4065 100 Minus
RpL7A-RF 1130 CG3314-RF 86..898 831..19 4065 100 Minus
RpL7A-RE 1011 CG3314-RE 86..898 831..19 4065 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6531835..6532206 322..693 1860 100 Plus
X 23542271 X 6531129..6531433 19..323 1525 100 Plus
X 23542271 X 6532297..6532423 692..818 635 100 Plus
Blast to na_te.dros performed on 2015-01-31 20:06:52 has no hits.

BO11662.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:57 Download gff for BO11662.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL7A-PC 1..816 16..831 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:09 Download gff for BO11662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3314-PC 1..816 16..831 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:36:20 Download gff for BO11662.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL7A-RD 175..987 19..831 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:49:07 Download gff for BO11662.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL7A-RE 86..898 19..831 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:49:07 Download gff for BO11662.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6531129..6531431 19..321 100 <- Plus
X 6531835..6532205 322..692 100 <- Plus
X 6532298..6532421 693..816 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:36:20 Download gff for BO11662.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6426331..6426454 693..816 100 <- Plus
arm_X 6425162..6425464 19..321 100 <- Plus
arm_X 6425868..6426238 322..692 100 <- Plus

BO11662.5prime Sequence

845 bp (758 high quality bases) assembled on 2006-04-19

> BO11662.5prime
GAAGTTATCAGTCGACATGGTTGTCAAGAAGCCCAGGCCAAAGAAGAAGC
CAGTGACCAAGAAGGTGGCTCCCGCTCCTCTGGCTGTCAAGAAGCCCGTG
GTCAAGAAGGTTGTTAACCAGCTGTTCGAGAAGCGTCCCAAGAACTTCGG
AATCGGCCAGAATGTGCAGCCCAAGCGCGATCTGTCCCGTTTCGTTCGCT
GGCCCAAATACATCCGGGTGCAGCGTCAAAAGGCTGTGCTCCAGAAGCGC
CTGAAGGTCCCACCACCAATCCACCAGTTCAGCCAGACTCTGGACAAGAC
CACCGCCGTGAAGCTGTTCAAGCTGCTGGAGAAGTACCGCCCCGAGTCGC
CGCTGGCCAAGAAGCTGCGCCTGAAGAAGATCGCCGAGGCTAAGGCCAAG
GGCAAGGATGTGGAGCCCAAGAAGAAGCCCAGCTATGTGTCCGCCGGTAC
CAACACGGTGACCAAGCTGATCGAGCAGAAGAAGGCCCAACTGGTGGTCA
TTGCCCACGATGTTGATCCTCTGGAGCTGGTGCTCTTCCTGCCCGCCCTG
TGCCGCAAGATGGGCGTGCCCTACTGCATTGTGAAGGGTAAGGCTCGTCT
GGGTCGCCTGGTGCGTCGCAAGACCTGCACCACCCTCGCCCTGACCACCG
TCGATAACAACGACAAGGCCAACTTCGGCAAGGTCCTGGAGGCTGTGAAG
ACCAACTTCAACGAGCGCCACGAGGAGATCCGTCGCCACTGGGGCGGTGG
TATCCTTGGCTCCAAGAGTCTGGCCCGCATCTCTAAGCTGGAGCGCGCCA
AGGCACGCGAGCTTGCCCAGAAGCAGGGTGCAAGCTTTCTAGACC

BO11662.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3314-PA 816 RpL7A-RA 1..813 17..829 4065 100 Plus
CG3314-PD 816 RpL7A-RD 1..813 17..829 4065 100 Plus
CG3314-PC 816 RpL7A-RC 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
RpL7A-RG 971 CG3314-RG 46..858 17..829 4065 100 Plus
RpL7A-RF 1130 CG3314-RF 86..898 17..829 4065 100 Plus
RpL7A-RE 1011 CG3314-RE 86..898 17..829 4065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6531835..6532206 526..155 1860 100 Minus
X 23542271 X 6531129..6531433 829..525 1525 100 Minus
X 23542271 X 6532297..6532423 156..30 635 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:10:45 has no hits.

BO11662.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:58 Download gff for BO11662.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL7A-PC 1..816 17..832 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:11 Download gff for BO11662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3314-PC 1..816 17..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:56:17 Download gff for BO11662.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL7A-RD 175..987 17..829 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:27:55 Download gff for BO11662.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL7A-RE 86..898 17..829 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:27:55 Download gff for BO11662.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6531129..6531431 527..829 100 <- Minus
X 6531835..6532205 156..526 100 <- Minus
X 6532298..6532421 32..155 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:56:17 Download gff for BO11662.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6426331..6426454 32..155 100 <- Minus
arm_X 6425162..6425464 527..829 100 <- Minus
arm_X 6425868..6426238 156..526 100 <- Minus

BO11662.complete Sequence

847 bp assembled on 2006-10-11

GenBank Submission: FJ632146

> BO11662.complete
GAAGTTATCAGTCGACATGGTTGTCAAGAAGCCCAGGCCAAAGAAGAAGC
CAGTGACCAAGAAGGTGGCTCCCGCTCCTCTGGCTGTCAAGAAGCCCGTG
GTCAAGAAGGTTGTTAACCAGCTGTTCGAGAAGCGTCCCAAGAACTTCGG
AATCGGCCAGAATGTGCAGCCCAAGCGCGATCTGTCCCGTTTCGTTCGCT
GGCCCAAATACATCCGGGTGCAGCGTCAAAAGGCTGTGCTCCAGAAGCGC
CTGAAGGTCCCACCACCAATCCACCAGTTCAGCCAGACTCTGGACAAGAC
CACCGCCGTGAAGCTGTTCAAGCTGCTGGAGAAGTACCGCCCCGAGTCGC
CGCTGGCCAAGAAGCTGCGCCTGAAGAAGATCGCCGAGGCTAAGGCCAAG
GGCAAGGATGTGGAGCCCAAGAAGAAGCCCAGCTATGTGTCCGCCGGTAC
CAACACGGTGACCAAGCTGATCGAGCAGAAGAAGGCCCAACTGGTGGTCA
TTGCCCACGATGTTGATCCTCTGGAGCTGGTGCTCTTCCTGCCCGCCCTG
TGCCGCAAGATGGGCGTGCCCTACTGCATTGTGAAGGGTAAGGCTCGTCT
GGGTCGCCTGGTGCGTCGCAAGACCTGCACCACCCTCGCCCTGACCACCG
TCGATAACAACGACAAGGCCAACTTCGGCAAGGTCCTGGAGGCTGTGAAG
ACCAACTTCAACGAGCGCCACGAGGAGATCCGTCGCCACTGGGGCGGTGG
TATCCTTGGCTCCAAGAGTCTGGCCCGCATCTCTAAGCTGGAGCGCGCCA
AGGCACGCGAGCTTGCCCAGAAGCAGGGTGCAAGCTTTCTAGACCAT

BO11662.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
RpL7A-RG 816 CG3314-PG 1..813 17..829 4065 100 Plus
RpL7A-RF 816 CG3314-PF 1..813 17..829 4065 100 Plus
RpL7A-RE 816 CG3314-PE 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
RpL7A-RG 971 CG3314-RG 46..858 17..829 4065 100 Plus
RpL7A-RF 1130 CG3314-RF 86..898 17..829 4065 100 Plus
RpL7A-RE 1011 CG3314-RE 86..898 17..829 4065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6531835..6532206 526..155 1860 100 Minus
X 23542271 X 6531129..6531433 829..525 1525 100 Minus
X 23542271 X 6532297..6532423 156..30 635 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:25:49 has no hits.

BO11662.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:18 Download gff for BO11662.complete
Subject Subject Range Query Range Percent Splice Strand
RpL7A-RC 1..816 17..832 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:12:25 Download gff for BO11662.complete
Subject Subject Range Query Range Percent Splice Strand
RpL7A-RC 44..856 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:51 Download gff for BO11662.complete
Subject Subject Range Query Range Percent Splice Strand
RpL7A-RD 175..987 17..831 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:18 Download gff for BO11662.complete
Subject Subject Range Query Range Percent Splice Strand
RpL7A-RC 44..856 17..829 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:20 Download gff for BO11662.complete
Subject Subject Range Query Range Percent Splice Strand
RpL7A-RE 86..898 17..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:20 Download gff for BO11662.complete
Subject Subject Range Query Range Percent Splice Strand
X 6531126..6531431 527..831 99 <- Minus
X 6531835..6532205 156..526 100 <- Minus
X 6532298..6532421 32..155 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:51 Download gff for BO11662.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6425159..6425464 527..831 99 <- Minus
arm_X 6425868..6426238 156..526 100 <- Minus
arm_X 6426331..6426454 32..155 100 <- Minus

BO11662.pep Sequence

Translation from 16 to 847

> BO11662.pep
MVVKKPRPKKKPVTKKVAPAPLAVKKPVVKKVVNQLFEKRPKNFGIGQNV
QPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKL
FKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTK
LIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVR
RKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGSK
SLARISKLERAKARELAQKQGASFLDH

BO11662.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
RpL7A-PG 271 CG3314-PG 1..271 1..271 1379 100 Plus
RpL7A-PF 271 CG3314-PF 1..271 1..271 1379 100 Plus
RpL7A-PE 271 CG3314-PE 1..271 1..271 1379 100 Plus
RpL7A-PD 271 CG3314-PD 1..271 1..271 1379 100 Plus
RpL7A-PA 271 CG3314-PA 1..271 1..271 1379 100 Plus