Clone Sequence Records
BO11663.5prime Sequence
368 bp (367 high quality bases) assembled on 2006-04-19
> BO11663.5prime
GAAGTTATCAGTCGACATGAAGATCACCGTGGTACTCGTACTTCTCGCCA
CCTTCCTCGGCTGTGTGATGATCCACGAGTCGGAGGCGTCCACAACCACC
ACGTCCACCTCCGCCTCGGCCACTACCACTACTTCCGCTTCGGCGACCAC
CACTACTTCCGCTTCGGCCACCACCACCACTTCCGCTTCGGCCACCACAA
CAACAGCCTCACCTTCCTCGAGCTCAAAAAAGAAGACTGTCACTCACTAT
AAGCGAAAGGTCAAGAGGCCAAAGAAGGTCAGGAAAATCACAAGGAGAAG
GGGTCTCAGGAGCCGCAATGGTCGCAGCAGTAGAAACCGCAGATCGGAAG
AAGCAAGCTTTCTAGACC
BO11663.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14266-PA | 339 | ng2-RA | 1..336 | 17..352 | 1680 | 100 | Plus |
CG10781-PA | 324 | ng1-RA | 1..311 | 17..327 | 1555 | 100 | Plus |
CG10788-PB | 441 | ng3-RB | 91..137 | 155..201 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ng2-RA | 546 | CG14266-RA | 37..373 | 16..352 | 1685 | 100 | Plus |
ng1-RA | 523 | CG10781-RA | 38..349 | 16..327 | 1560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:26:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3240199..3240535 | 352..16 | 1685 | 100 | Minus |
X | 23542271 | X | 3242449..3242760 | 16..327 | 1560 | 100 | Plus |
X | 23542271 | X | 3240353..3240417 | 174..110 | 250 | 92.3 | Minus |
X | 23542271 | X | 3240377..3240441 | 198..134 | 250 | 92.3 | Minus |
X | 23542271 | X | 3242543..3242607 | 134..198 | 250 | 92.3 | Plus |
X | 23542271 | X | 3242567..3242631 | 110..174 | 250 | 92.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:26:51 has no hits.
BO11663.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:00 Download gff for
BO11663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-PA | 1..339 | 17..356 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:14 Download gff for
BO11663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14266-PA | 1..339 | 17..356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:30:31 Download gff for
BO11663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-RA | 33..377 | 8..357 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:55:44 Download gff for
BO11663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-RA | 33..377 | 8..357 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:55:44 Download gff for
BO11663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3240195..3240539 | 8..357 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:30:31 Download gff for
BO11663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3134228..3134572 | 8..357 | 98 | | Minus |
BO11663.3prime Sequence
368 bp (367 high quality bases) assembled on 2006-04-19
> BO11663.3prime
ATGGTCTAGAAAGCTTGCTTCTTCCGATCTGCGGTTTCTACTGCTGCGAC
CATTGCGGCTCCTGAGACCCCTTCTCCTTGTGATTTTCCTGACCTTCTTT
GGCCTCTTGACCTTTCGCTTATAGTGAGTGACAGTCTTCTTTTTTGAGCT
CGAGGAAGGTGAGGCTGTTGTTGTGGTGGCCGAAGCGGAAGTGGTGGTGG
TGGCCGAAGCGGAAGTAGTGGTGGTCGCCGAAGCGGAAGTAGTGGTAGTG
GCCGAGGCGGAGGTGGACGTGGTGGTTGTGGACGCCTCCGACTCGTGGAT
CATCACACAGCCGAGGAAGGTGGCGAGAAGTACGAGTACCACGGTGATCT
TCATGTCGACTGATAACT
BO11663.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14266-PA | 339 | ng2-RA | 1..336 | 354..19 | 1680 | 100 | Minus |
CG10781-PA | 324 | ng1-RA | 1..311 | 354..44 | 1555 | 100 | Minus |
CG10788-PB | 441 | ng3-RB | 91..137 | 216..170 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ng2-RA | 546 | CG14266-RA | 37..373 | 355..19 | 1685 | 100 | Minus |
ng1-RA | 523 | CG10781-RA | 38..349 | 355..44 | 1560 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3240199..3240535 | 19..355 | 1685 | 100 | Plus |
X | 23542271 | X | 3242449..3242760 | 355..44 | 1560 | 100 | Minus |
X | 23542271 | X | 3240353..3240417 | 197..261 | 250 | 92.3 | Plus |
X | 23542271 | X | 3240377..3240441 | 173..237 | 250 | 92.3 | Plus |
X | 23542271 | X | 3242543..3242607 | 237..173 | 250 | 92.3 | Minus |
X | 23542271 | X | 3242567..3242631 | 261..197 | 250 | 92.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:44:21 has no hits.
BO11663.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:12:59 Download gff for
BO11663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-PA | 1..339 | 15..354 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:12 Download gff for
BO11663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14266-PA | 1..339 | 15..354 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:44:32 Download gff for
BO11663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-RA | 33..377 | 14..363 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:06:32 Download gff for
BO11663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-RA | 33..377 | 14..363 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:06:32 Download gff for
BO11663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3240195..3240539 | 14..363 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:44:32 Download gff for
BO11663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3134228..3134572 | 14..363 | 98 | | Plus |
BO11663.complete Sequence
370 bp assembled on 2006-10-11
GenBank Submission: FJ632147
> BO11663.complete
GAAGTTATCAGTCGACATGAAGATCACCGTGGTACTCGTACTTCTCGCCA
CCTTCCTCGGCTGTGTGATGATCCACGAGTCGGAGGCGTCCACAACCACC
ACGTCCACCTCCGCCTCGGCCACTACCACTACTTCCGCTTCGGCGACCAC
CACTACTTCCGCTTCGGCCACCACCACCACTTCCGCTTCGGCCACCACAA
CAACAGCCTCACCTTCCTCGAGCTCAAAAAAGAAGACTGTCACTCACTAT
AAGCGAAAGGTCAAGAGGCCAAAGAAGGTCAGGAAAATCACAAGGAGAAG
GGGTCTCAGGAGCCGCAATGGTCGCAGCAGTAGAAACCGCAGATCGGAAG
AAGCAAGCTTTCTAGACCAT
BO11663.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ng2-RA | 339 | CG14266-PA | 1..336 | 17..352 | 1680 | 100 | Plus |
ng1-RA | 324 | CG10781-PA | 1..311 | 17..327 | 1555 | 100 | Plus |
ng2-RA | 339 | CG14266-PA | 94..158 | 134..198 | 250 | 92.3 | Plus |
ng2-RA | 339 | CG14266-PA | 118..182 | 110..174 | 250 | 92.3 | Plus |
ng1-RA | 324 | CG10781-PA | 94..158 | 134..198 | 250 | 92.3 | Plus |
ng1-RA | 324 | CG10781-PA | 118..182 | 110..174 | 250 | 92.3 | Plus |
ng3-RB | 441 | CG10788-PB | 91..137 | 155..201 | 175 | 91.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ng2-RA | 546 | CG14266-RA | 37..373 | 16..352 | 1685 | 100 | Plus |
ng1-RA | 523 | CG10781-RA | 38..349 | 16..327 | 1560 | 100 | Plus |
ng2-RA | 546 | CG14266-RA | 131..195 | 134..198 | 250 | 92.3 | Plus |
ng2-RA | 546 | CG14266-RA | 155..219 | 110..174 | 250 | 92.3 | Plus |
ng1-RA | 523 | CG10781-RA | 132..196 | 134..198 | 250 | 92.3 | Plus |
ng1-RA | 523 | CG10781-RA | 156..220 | 110..174 | 250 | 92.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:56:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3240199..3240535 | 352..16 | 1685 | 100 | Minus |
X | 23542271 | X | 3242449..3242760 | 16..327 | 1560 | 100 | Plus |
X | 23542271 | X | 3240353..3240417 | 174..110 | 250 | 92.3 | Minus |
X | 23542271 | X | 3240377..3240441 | 198..134 | 250 | 92.3 | Minus |
X | 23542271 | X | 3242543..3242607 | 134..198 | 250 | 92.3 | Plus |
X | 23542271 | X | 3242567..3242631 | 110..174 | 250 | 92.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:56:18 has no hits.
BO11663.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:58 Download gff for
BO11663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-RA | 1..339 | 17..356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:13:36 Download gff for
BO11663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-RA | 33..377 | 8..357 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:52 Download gff for
BO11663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-RA | 38..373 | 17..354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:59 Download gff for
BO11663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-RA | 33..377 | 8..357 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:31 Download gff for
BO11663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ng2-RA | 38..373 | 17..354 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:31 Download gff for
BO11663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3240197..3240534 | 17..354 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:52 Download gff for
BO11663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3134230..3134567 | 17..354 | 99 | | Minus |
BO11663.pep Sequence
Translation from 16 to 370
> BO11663.pep
MKITVVLVLLATFLGCVMIHESEASTTTTSTSASATTTTSASATTTTSAS
ATTTTSASATTTTASPSSSSKKKTVTHYKRKVKRPKKVRKITRRRGLRSR
NGRSSRNRRSEEASFLDH
BO11663.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ng2-PA | 112 | CG14266-PA | 1..112 | 1..112 | 536 | 100 | Plus |
ng1-PA | 107 | CG10781-PA | 1..105 | 1..105 | 496 | 99 | Plus |
CG33267-PB | 94 | CG33267-PB | 1..90 | 1..95 | 257 | 62.1 | Plus |
ng3-PB | 146 | CG10788-PB | 1..119 | 1..114 | 254 | 53.7 | Plus |
CG7377-PA | 94 | CG7377-PA | 1..90 | 1..95 | 238 | 60.4 | Plus |