Clone BO11664 Report

Search the DGRC for BO11664

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:64
Vector:pDNR-Dual
Associated Gene/Transcriptlin-28-RA
Protein status:BO11664.pep: validated full length
Sequenced Size:619

Clone Sequence Records

BO11664.3prime Sequence

617 bp (616 high quality bases) assembled on 2006-04-19

> BO11664.3prime
ATGGTCTAGAAAGCTTGCGGTGGCCTCCTCGCTCTTCTCTTGGGCTGCAC
TGCTGCTGCTATTGTTGCTTATGCTTTTGCTATTACTGTGGCTTTGGGTC
ACATTCTTGTGCGGGCAGTCGGCATGGAGATGGTCTTCTCCACGGCAGCG
ATGACAGCGCTTCGGCTGAGGACCCAAAGCGCATTCGGAGGCAATGTGAT
TGGCGAATTCGCCGCAGTTGTAGCAGCGCATGCGGCGAGTCCGGCGATTT
ATTCGCGGCCTGTAGGTGCTGCCTTGGCAGCTACCGCCATGCCTGCTGGA
CACCCTGGTGGCCTCCAATCCGCGCGACGTGCGCTGGCACTCGAATTCCA
CCTCCTCCTGCTCGCCCAGTGATCGGAAACCTGACATCTGGATGACGCTC
TGATGGACGAACACCTCCTGGCCGCCGTCGTTGGGTGTAAGGAAGCCCCA
TCCCTTGGCCACGTTGAACCATTTGCATTTGCCCAGTCGCACACAACCGC
ATTCCTCGGTGGGACTCGCAAGATTTGCCGGATTCGCTGATGAAGTGGAA
CTCTGGCTGGTGGTCCTCCTTTCCAAGCCATTTTCCAGCTGTACGTTCTC
CATGTCGACTGATAACT

BO11664.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17334-PA 588 lin-28-RA 1..585 603..19 2925 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
lin-28-RA 1152 CG17334-RA 299..884 604..19 2930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5656603..5656753 401..251 755 100 Minus
3L 28110227 3L 5656823..5656973 250..100 755 100 Minus
3L 28110227 3L 5656316..5656455 539..400 700 100 Minus
3L 28110227 3L 5657035..5657116 100..19 410 100 Minus
3L 28110227 3L 5654979..5655046 604..537 340 100 Minus
Blast to na_te.dros performed 2015-01-31 20:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6856 110..50 124 68.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2393 93..15 118 65.9 Minus
roo 9092 roo DM_ROO 9092bp 1058..1100 85..44 113 76.7 Minus

BO11664.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:01 Download gff for BO11664.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17334-PA 1..588 18..603 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:15 Download gff for BO11664.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17334-PA 1..588 18..603 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:37:18 Download gff for BO11664.3prime
Subject Subject Range Query Range Percent Splice Strand
lin-28-RA 293..884 19..610 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:50:05 Download gff for BO11664.3prime
Subject Subject Range Query Range Percent Splice Strand
lin-28-RA 293..884 19..610 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:50:05 Download gff for BO11664.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5654973..5655046 537..610 97 -> Minus
3L 5656319..5656455 400..536 100 -> Minus
3L 5656605..5656753 251..399 100 -> Minus
3L 5656823..5656973 100..250 100 -> Minus
3L 5657036..5657116 19..99 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:37:18 Download gff for BO11664.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5650136..5650216 19..99 100   Minus
arm_3L 5649705..5649853 251..399 100 -> Minus
arm_3L 5649923..5650073 100..250 100 -> Minus
arm_3L 5648073..5648146 537..610 97 -> Minus
arm_3L 5649419..5649555 400..536 100 -> Minus

BO11664.5prime Sequence

617 bp (616 high quality bases) assembled on 2006-04-19

> BO11664.5prime
GAAGTTATCAGTCGACATGGAGAACGTACAGCTGGAAAATGGCTTGGAAA
GGAGGACCACCAGCCAGAGTTCCACTTCATCAGCGAATCCGGCAAATCTT
GCGAGTCCCACCGAGGAATGCGGTTGTGTGCGACTGGGCAAATGCAAATG
GTTCAACGTGGCCAAGGGATGGGGCTTCCTTACACCCAACGACGGCGGCC
AGGAGGTGTTCGTCCATCAGAGCGTCATCCAGATGTCAGGTTTCCGATCA
CTGGGCGAGCAGGAGGAGGTGGAATTCGAGTGCCAGCGCACGTCGCGCGG
ATTGGAGGCCACCAGGGTGTCCAGCAGGCATGGCGGTAGCTGCCAAGGCA
GCACCTACAGGCCGCGAATAAATCGCCGGACTCGCCGCATGCGCTGCTAC
AACTGCGGCGAATTCGCCAATCACATTGCCTCCGAATGCGCTTTGGGTCC
TCAGCCGAAGCGCTGTCATCGCTGCCGTGGAGAAGACCATCTCCATGCCG
ACTGCCCGCACAAGAATGTGACCCAAAGCCACAGTAATAGCAAAAGCATA
AGCAACAATAGCAGCAGCAGTGCAGCCCAAGAGAAGAGCGAGGAGGCCAC
CGCAAGCTTTCTAGACC

BO11664.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG17334-PA 588 lin-28-RA 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
lin-28-RA 1152 CG17334-RA 299..884 16..601 2930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5656603..5656753 219..369 755 100 Plus
3L 28110227 3L 5656823..5656973 370..520 755 100 Plus
3L 28110227 3L 5656316..5656455 81..220 700 100 Plus
3L 28110227 3L 5657035..5657116 520..601 410 100 Plus
3L 28110227 3L 5654979..5655046 16..83 340 100 Plus
Blast to na_te.dros performed 2015-02-10 20:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6856 510..570 124 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2393 527..605 118 65.9 Plus
roo 9092 roo DM_ROO 9092bp 1058..1100 535..576 113 76.7 Plus

BO11664.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:02 Download gff for BO11664.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17334-PA 1..588 17..602 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:17 Download gff for BO11664.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17334-PA 1..588 17..602 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:01:23 Download gff for BO11664.5prime
Subject Subject Range Query Range Percent Splice Strand
lin-28-RA 293..884 10..601 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:24:56 Download gff for BO11664.5prime
Subject Subject Range Query Range Percent Splice Strand
lin-28-RA 293..884 10..601 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:24:56 Download gff for BO11664.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5654973..5655046 10..83 97 -> Plus
3L 5656319..5656455 84..220 100 -> Plus
3L 5656605..5656753 221..369 100 -> Plus
3L 5656823..5656973 370..520 100 -> Plus
3L 5657036..5657116 521..601 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:01:23 Download gff for BO11664.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5648073..5648146 10..83 97 -> Plus
arm_3L 5649419..5649555 84..220 100 -> Plus
arm_3L 5649705..5649853 221..369 100 -> Plus
arm_3L 5649923..5650073 370..520 100 -> Plus
arm_3L 5650136..5650216 521..601 100   Plus

BO11664.complete Sequence

619 bp assembled on 2006-10-11

GenBank Submission: FJ632148

> BO11664.complete
GAAGTTATCAGTCGACATGGAGAACGTACAGCTGGAAAATGGCTTGGAAA
GGAGGACCACCAGCCAGAGTTCCACTTCATCAGCGAATCCGGCAAATCTT
GCGAGTCCCACCGAGGAATGCGGTTGTGTGCGACTGGGCAAATGCAAATG
GTTCAACGTGGCCAAGGGATGGGGCTTCCTTACACCCAACGACGGCGGCC
AGGAGGTGTTCGTCCATCAGAGCGTCATCCAGATGTCAGGTTTCCGATCA
CTGGGCGAGCAGGAGGAGGTGGAATTCGAGTGCCAGCGCACGTCGCGCGG
ATTGGAGGCCACCAGGGTGTCCAGCAGGCATGGCGGTAGCTGCCAAGGCA
GCACCTACAGGCCGCGAATAAATCGCCGGACTCGCCGCATGCGCTGCTAC
AACTGCGGCGAATTCGCCAATCACATTGCCTCCGAATGCGCTTTGGGTCC
TCAGCCGAAGCGCTGTCATCGCTGCCGTGGAGAAGACCATCTCCATGCCG
ACTGCCCGCACAAGAATGTGACCCAAAGCCACAGTAATAGCAAAAGCATA
AGCAACAATAGCAGCAGCAGTGCAGCCCAAGAGAAGAGCGAGGAGGCCAC
CGCAAGCTTTCTAGACCAT

BO11664.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
lin-28-RA 588 CG17334-PA 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
lin-28-RA 1152 CG17334-RA 299..884 16..601 2930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5656603..5656753 219..369 755 100 Plus
3L 28110227 3L 5656823..5656973 370..520 755 100 Plus
3L 28110227 3L 5656316..5656455 81..220 700 100 Plus
3L 28110227 3L 5657035..5657116 520..601 410 100 Plus
3L 28110227 3L 5654979..5655046 16..83 340 100 Plus
Blast to na_te.dros performed 2014-11-26 16:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6856 510..570 124 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2393 527..605 118 65.9 Plus
roo 9092 roo DM_ROO 9092bp 1058..1100 535..576 113 76.7 Plus

BO11664.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:13 Download gff for BO11664.complete
Subject Subject Range Query Range Percent Splice Strand
lin-28-RA 1..588 17..602 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:13:55 Download gff for BO11664.complete
Subject Subject Range Query Range Percent Splice Strand
lin-28-RA 291..882 10..601 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:13:52 Download gff for BO11664.complete
Subject Subject Range Query Range Percent Splice Strand
lin-28-RA 300..884 17..603 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:13 Download gff for BO11664.complete
Subject Subject Range Query Range Percent Splice Strand
lin-28-RA 291..882 10..601 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:22 Download gff for BO11664.complete
Subject Subject Range Query Range Percent Splice Strand
lin-28-RA 300..884 17..603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:22 Download gff for BO11664.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5654980..5655046 17..83 100 -> Plus
3L 5656319..5656455 84..220 100 -> Plus
3L 5656605..5656753 221..369 100 -> Plus
3L 5656823..5656973 370..520 100 -> Plus
3L 5657036..5657116 521..603 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:13:52 Download gff for BO11664.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5648080..5648146 17..83 100 -> Plus
arm_3L 5649419..5649555 84..220 100 -> Plus
arm_3L 5649705..5649853 221..369 100 -> Plus
arm_3L 5649923..5650073 370..520 100 -> Plus
arm_3L 5650136..5650216 521..603 97   Plus

BO11664.pep Sequence

Translation from 16 to 619

> BO11664.pep
MENVQLENGLERRTTSQSSTSSANPANLASPTEECGCVRLGKCKWFNVAK
GWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRGLEATR
VSSRHGGSCQGSTYRPRINRRTRRMRCYNCGEFANHIASECALGPQPKRC
HRCRGEDHLHADCPHKNVTQSHSNSKSISNNSSSSAAQEKSEEATASFLD
H

BO11664.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
lin-28-PA 195 CG17334-PA 1..195 1..195 1052 100 Plus
yps-PB 340 CG5654-PB 51..150 29..123 152 38 Plus
yps-PA 352 CG5654-PA 51..150 29..123 152 38 Plus