Clone Sequence Records
BO11664.3prime Sequence
617 bp (616 high quality bases) assembled on 2006-04-19
> BO11664.3prime
ATGGTCTAGAAAGCTTGCGGTGGCCTCCTCGCTCTTCTCTTGGGCTGCAC
TGCTGCTGCTATTGTTGCTTATGCTTTTGCTATTACTGTGGCTTTGGGTC
ACATTCTTGTGCGGGCAGTCGGCATGGAGATGGTCTTCTCCACGGCAGCG
ATGACAGCGCTTCGGCTGAGGACCCAAAGCGCATTCGGAGGCAATGTGAT
TGGCGAATTCGCCGCAGTTGTAGCAGCGCATGCGGCGAGTCCGGCGATTT
ATTCGCGGCCTGTAGGTGCTGCCTTGGCAGCTACCGCCATGCCTGCTGGA
CACCCTGGTGGCCTCCAATCCGCGCGACGTGCGCTGGCACTCGAATTCCA
CCTCCTCCTGCTCGCCCAGTGATCGGAAACCTGACATCTGGATGACGCTC
TGATGGACGAACACCTCCTGGCCGCCGTCGTTGGGTGTAAGGAAGCCCCA
TCCCTTGGCCACGTTGAACCATTTGCATTTGCCCAGTCGCACACAACCGC
ATTCCTCGGTGGGACTCGCAAGATTTGCCGGATTCGCTGATGAAGTGGAA
CTCTGGCTGGTGGTCCTCCTTTCCAAGCCATTTTCCAGCTGTACGTTCTC
CATGTCGACTGATAACT
BO11664.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17334-PA | 588 | lin-28-RA | 1..585 | 603..19 | 2925 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:11:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lin-28-RA | 1152 | CG17334-RA | 299..884 | 604..19 | 2930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5656603..5656753 | 401..251 | 755 | 100 | Minus |
3L | 28110227 | 3L | 5656823..5656973 | 250..100 | 755 | 100 | Minus |
3L | 28110227 | 3L | 5656316..5656455 | 539..400 | 700 | 100 | Minus |
3L | 28110227 | 3L | 5657035..5657116 | 100..19 | 410 | 100 | Minus |
3L | 28110227 | 3L | 5654979..5655046 | 604..537 | 340 | 100 | Minus |
Blast to na_te.dros performed 2015-01-31 20:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6856 | 110..50 | 124 | 68.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2393 | 93..15 | 118 | 65.9 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1058..1100 | 85..44 | 113 | 76.7 | Minus |
BO11664.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:01 Download gff for
BO11664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17334-PA | 1..588 | 18..603 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:15 Download gff for
BO11664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17334-PA | 1..588 | 18..603 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:37:18 Download gff for
BO11664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lin-28-RA | 293..884 | 19..610 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:50:05 Download gff for
BO11664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lin-28-RA | 293..884 | 19..610 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:50:05 Download gff for
BO11664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5654973..5655046 | 537..610 | 97 | -> | Minus |
3L | 5656319..5656455 | 400..536 | 100 | -> | Minus |
3L | 5656605..5656753 | 251..399 | 100 | -> | Minus |
3L | 5656823..5656973 | 100..250 | 100 | -> | Minus |
3L | 5657036..5657116 | 19..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:37:18 Download gff for
BO11664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5650136..5650216 | 19..99 | 100 | | Minus |
arm_3L | 5649705..5649853 | 251..399 | 100 | -> | Minus |
arm_3L | 5649923..5650073 | 100..250 | 100 | -> | Minus |
arm_3L | 5648073..5648146 | 537..610 | 97 | -> | Minus |
arm_3L | 5649419..5649555 | 400..536 | 100 | -> | Minus |
BO11664.5prime Sequence
617 bp (616 high quality bases) assembled on 2006-04-19
> BO11664.5prime
GAAGTTATCAGTCGACATGGAGAACGTACAGCTGGAAAATGGCTTGGAAA
GGAGGACCACCAGCCAGAGTTCCACTTCATCAGCGAATCCGGCAAATCTT
GCGAGTCCCACCGAGGAATGCGGTTGTGTGCGACTGGGCAAATGCAAATG
GTTCAACGTGGCCAAGGGATGGGGCTTCCTTACACCCAACGACGGCGGCC
AGGAGGTGTTCGTCCATCAGAGCGTCATCCAGATGTCAGGTTTCCGATCA
CTGGGCGAGCAGGAGGAGGTGGAATTCGAGTGCCAGCGCACGTCGCGCGG
ATTGGAGGCCACCAGGGTGTCCAGCAGGCATGGCGGTAGCTGCCAAGGCA
GCACCTACAGGCCGCGAATAAATCGCCGGACTCGCCGCATGCGCTGCTAC
AACTGCGGCGAATTCGCCAATCACATTGCCTCCGAATGCGCTTTGGGTCC
TCAGCCGAAGCGCTGTCATCGCTGCCGTGGAGAAGACCATCTCCATGCCG
ACTGCCCGCACAAGAATGTGACCCAAAGCCACAGTAATAGCAAAAGCATA
AGCAACAATAGCAGCAGCAGTGCAGCCCAAGAGAAGAGCGAGGAGGCCAC
CGCAAGCTTTCTAGACC
BO11664.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17334-PA | 588 | lin-28-RA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lin-28-RA | 1152 | CG17334-RA | 299..884 | 16..601 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:49:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5656603..5656753 | 219..369 | 755 | 100 | Plus |
3L | 28110227 | 3L | 5656823..5656973 | 370..520 | 755 | 100 | Plus |
3L | 28110227 | 3L | 5656316..5656455 | 81..220 | 700 | 100 | Plus |
3L | 28110227 | 3L | 5657035..5657116 | 520..601 | 410 | 100 | Plus |
3L | 28110227 | 3L | 5654979..5655046 | 16..83 | 340 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 20:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6856 | 510..570 | 124 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2393 | 527..605 | 118 | 65.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1058..1100 | 535..576 | 113 | 76.7 | Plus |
BO11664.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:02 Download gff for
BO11664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17334-PA | 1..588 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:17 Download gff for
BO11664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17334-PA | 1..588 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:01:23 Download gff for
BO11664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lin-28-RA | 293..884 | 10..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:24:56 Download gff for
BO11664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lin-28-RA | 293..884 | 10..601 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:24:56 Download gff for
BO11664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5654973..5655046 | 10..83 | 97 | -> | Plus |
3L | 5656319..5656455 | 84..220 | 100 | -> | Plus |
3L | 5656605..5656753 | 221..369 | 100 | -> | Plus |
3L | 5656823..5656973 | 370..520 | 100 | -> | Plus |
3L | 5657036..5657116 | 521..601 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:01:23 Download gff for
BO11664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5648073..5648146 | 10..83 | 97 | -> | Plus |
arm_3L | 5649419..5649555 | 84..220 | 100 | -> | Plus |
arm_3L | 5649705..5649853 | 221..369 | 100 | -> | Plus |
arm_3L | 5649923..5650073 | 370..520 | 100 | -> | Plus |
arm_3L | 5650136..5650216 | 521..601 | 100 | | Plus |
BO11664.complete Sequence
619 bp assembled on 2006-10-11
GenBank Submission: FJ632148
> BO11664.complete
GAAGTTATCAGTCGACATGGAGAACGTACAGCTGGAAAATGGCTTGGAAA
GGAGGACCACCAGCCAGAGTTCCACTTCATCAGCGAATCCGGCAAATCTT
GCGAGTCCCACCGAGGAATGCGGTTGTGTGCGACTGGGCAAATGCAAATG
GTTCAACGTGGCCAAGGGATGGGGCTTCCTTACACCCAACGACGGCGGCC
AGGAGGTGTTCGTCCATCAGAGCGTCATCCAGATGTCAGGTTTCCGATCA
CTGGGCGAGCAGGAGGAGGTGGAATTCGAGTGCCAGCGCACGTCGCGCGG
ATTGGAGGCCACCAGGGTGTCCAGCAGGCATGGCGGTAGCTGCCAAGGCA
GCACCTACAGGCCGCGAATAAATCGCCGGACTCGCCGCATGCGCTGCTAC
AACTGCGGCGAATTCGCCAATCACATTGCCTCCGAATGCGCTTTGGGTCC
TCAGCCGAAGCGCTGTCATCGCTGCCGTGGAGAAGACCATCTCCATGCCG
ACTGCCCGCACAAGAATGTGACCCAAAGCCACAGTAATAGCAAAAGCATA
AGCAACAATAGCAGCAGCAGTGCAGCCCAAGAGAAGAGCGAGGAGGCCAC
CGCAAGCTTTCTAGACCAT
BO11664.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:57:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lin-28-RA | 588 | CG17334-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lin-28-RA | 1152 | CG17334-RA | 299..884 | 16..601 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5656603..5656753 | 219..369 | 755 | 100 | Plus |
3L | 28110227 | 3L | 5656823..5656973 | 370..520 | 755 | 100 | Plus |
3L | 28110227 | 3L | 5656316..5656455 | 81..220 | 700 | 100 | Plus |
3L | 28110227 | 3L | 5657035..5657116 | 520..601 | 410 | 100 | Plus |
3L | 28110227 | 3L | 5654979..5655046 | 16..83 | 340 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6856 | 510..570 | 124 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2393 | 527..605 | 118 | 65.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1058..1100 | 535..576 | 113 | 76.7 | Plus |
BO11664.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:13 Download gff for
BO11664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lin-28-RA | 1..588 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:13:55 Download gff for
BO11664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lin-28-RA | 291..882 | 10..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:13:52 Download gff for
BO11664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lin-28-RA | 300..884 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:13 Download gff for
BO11664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lin-28-RA | 291..882 | 10..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:22 Download gff for
BO11664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lin-28-RA | 300..884 | 17..603 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:22 Download gff for
BO11664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5654980..5655046 | 17..83 | 100 | -> | Plus |
3L | 5656319..5656455 | 84..220 | 100 | -> | Plus |
3L | 5656605..5656753 | 221..369 | 100 | -> | Plus |
3L | 5656823..5656973 | 370..520 | 100 | -> | Plus |
3L | 5657036..5657116 | 521..603 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:13:52 Download gff for
BO11664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5648080..5648146 | 17..83 | 100 | -> | Plus |
arm_3L | 5649419..5649555 | 84..220 | 100 | -> | Plus |
arm_3L | 5649705..5649853 | 221..369 | 100 | -> | Plus |
arm_3L | 5649923..5650073 | 370..520 | 100 | -> | Plus |
arm_3L | 5650136..5650216 | 521..603 | 97 | | Plus |
BO11664.pep Sequence
Translation from 16 to 619
> BO11664.pep
MENVQLENGLERRTTSQSSTSSANPANLASPTEECGCVRLGKCKWFNVAK
GWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRGLEATR
VSSRHGGSCQGSTYRPRINRRTRRMRCYNCGEFANHIASECALGPQPKRC
HRCRGEDHLHADCPHKNVTQSHSNSKSISNNSSSSAAQEKSEEATASFLD
H
BO11664.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lin-28-PA | 195 | CG17334-PA | 1..195 | 1..195 | 1052 | 100 | Plus |
yps-PB | 340 | CG5654-PB | 51..150 | 29..123 | 152 | 38 | Plus |
yps-PA | 352 | CG5654-PA | 51..150 | 29..123 | 152 | 38 | Plus |