Clone BO11669 Report

Search the DGRC for BO11669

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCad96Ca-RA
Protein status:BO11669.pep:
Sequenced Size:2353

Clone Sequence Records

BO11669.3prime Sequence

899 bp (826 high quality bases) assembled on 2006-04-19

> BO11669.3prime
ATGGTCTAGAAAGCTTGCCAACTTTTCACCACTAAGACTAACGATATTGT
AGTAGTTGTGATCGGGAAACCGCTCGAGTTCGATATAATCCATTTCCGTG
TGCAGCAGCTTGTCGAGCATTTGGATTATTTCCGCGAATAGAGGACGCTC
CTGGGGATCGTGGGACCAGCAGTAGTACATTATGTTGTACAGCTCCCGAC
GACAGTGCTCGGGCTTCTCCAGACGATATCCATCCCTCACCTTTCGCATC
ACATCTGCTGCTGATATGCCAGGGTAGGGCGTCGATCCCAGCGTCACAAT
TTCCCACATCAGTATGCCGAAGCTCCAGATATCCGACTTTACGGAGAATA
TATTGTCGTATAGCGACTCTGTAGCCATCCATCTGATGGGCAGCTTGCCC
TCGCTTTTTCTTTCATAAATCTTCGAGGTGATTACATCTCGTGCGAAGCC
AAAGTCCGCAACTTTGCAAGTGTGATCATCGGTTATGAGAATATTTCGAG
CAGCCAAGTCACGATGGATAATTCCTCGAGATGTTAGGTAGTCCATGCCC
TTAGCTACTTGATACATAAAGGATGTTAGGTCGCAGGACGTTAGTACATT
TGACTTTCCATGAGTGTTTCCATAGTGCCTTTCGGCGCGTGAGCTGCGTA
GGTACGTTTGCAGTTTTCCCCGATTCACGTACTCCAGAATCACAAATGTG
GGATCCTTGTCCGTGCAGCAGCCCAACAAATGAACAACATTGATGTGTGG
CTCCAGAGATTTCATTACCTCCAGTTCGGATAAGAGGTCCTTGCGATCCA
CTTCGGTGGCACTTTCCTTGAGCGTCTTCACAGCCACGGTTGTAATGCCC
TCGTTGCCATTTATATTAGTGGCCTCGCAGCGCCAAACTTGTCCGAAGG

BO11669.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG10244-PA 2322 Cad96Ca-RA 1439..2319 899..19 4405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
Cad96Ca-RA 2939 CG10244-RA 1648..2528 899..19 4405 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25197982..25198205 19..242 1120 100 Plus
3R 32079331 3R 25198267..25198414 239..386 740 100 Plus
3R 32079331 3R 25198838..25198980 628..770 715 100 Plus
3R 32079331 3R 25198474..25198613 383..522 700 100 Plus
3R 32079331 3R 25198675..25198782 523..630 540 100 Plus
3R 32079331 3R 25201558..25201649 767..858 460 100 Plus
3R 32079331 3R 25202295..25202337 857..899 215 100 Plus
Blast to na_te.dros performed 2015-01-31 20:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
diver 6112 diver Tinker 6112bp 5532..5698 531..369 149 58.6 Minus

BO11669.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:11 Download gff for BO11669.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10244-PA 1439..2322 18..899 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:29 Download gff for BO11669.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10244-PA 1439..2322 18..899 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:36:23 Download gff for BO11669.3prime
Subject Subject Range Query Range Percent Splice Strand
Cad96Ca-RA 1648..2528 19..899 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:49:10 Download gff for BO11669.3prime
Subject Subject Range Query Range Percent Splice Strand
Cad96Ca-RA 1648..2528 19..899 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:49:10 Download gff for BO11669.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25197982..25198203 19..240 100 <- Plus
3R 25198269..25198410 241..382 100 <- Plus
3R 25198474..25198613 383..522 100 <- Plus
3R 25198675..25198780 523..628 100 <- Plus
3R 25198839..25198978 629..768 100 <- Plus
3R 25201560..25201648 769..857 100 <- Plus
3R 25202296..25202337 858..899 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:36:23 Download gff for BO11669.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21023704..21023925 19..240 100 <- Plus
arm_3R 21023991..21024132 241..382 100 <- Plus
arm_3R 21024196..21024335 383..522 100 <- Plus
arm_3R 21024397..21024502 523..628 100 <- Plus
arm_3R 21024561..21024700 629..768 100 <- Plus
arm_3R 21027282..21027370 769..857 100 <- Plus
arm_3R 21028018..21028059 858..899 100   Plus

BO11669.5prime Sequence

886 bp (743 high quality bases) assembled on 2006-04-19

> BO11669.5prime
GAAGTTATCAGTCGACATGGTTTATCACCATCACAACCACGAAAGTCGGA
TAATACACTGCAGAAAACAATTAACTTCCTGGCGGAGAAGAAGCCTGCTG
CTGACCATCATTGTGGTCACAGCCACAGTGGTTTCACTGATTTCACAAGA
AGCCGAGGCCCACAATCAGAATGCACCACCGATTCTATATGTTCGCGAAC
GCAACTGGCGTATTTCGGAGACCGAGAAAGTTGGCCAGATAATCGATAGA
GTGCGGGCGGAGGATCCGGATGGCGATGATCTGATATTTGGCATAGAACC
GCGATTCAGTCTGCCTGGTGGTGAAAACGATGCTAGTCCTCCGGAGAAGA
TACCCTTTCAAATTGATCGAGAAACGGGAGTGGTAACTCTCAATGAAAGT
TTGGCAGGAAGGGCTGGTCAGAATTTTCTCATCTATATAACTGTCACCGA
TGGCTCCTATACGGCAAAGAATGAGGTTTTCATCAATATCTTGGGCGAGC
GGGAGAATAGCTCCGGCTATCGACCGCAGACATCAATTTCGAACGTGGTG
CACAATATATCGCAATTCCTTCCACGTTTTGACCAGCTGCCCGGTGTTCA
ATCCATCCGGAATGGGCTGCCAAACAGCCGACCAGGCGGTTGGTATCCAC
CGGTGCCCCAGAACAATATATTCGGTCCGCCGCCATTCGGTAACAACTAC
CCACCGCCTCCGCCGAATATTCCCGGCGTGCGGGGAGAGCAGAGTGGAGA
AGAGGAGCAGCCGGATGAGGAGGTGACACCCACAACACCCGTCAGAATCA
GCTCCACCACGCCGAAGAGTCGCACCAAACTGACGCCGATAACTGCCAAT
AATTCAACGAGAGTCGAATCCGCAATCCCCGGCGGA

BO11669.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10244-PA 2322 Cad96Ca-RA 1..865 17..881 4325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 06:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
Cad96Ca-RA 2939 CG10244-RA 210..1074 17..881 4325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 06:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25204049..25204518 881..412 2350 100 Minus
3R 32079331 3R 25204582..25204844 413..151 1315 100 Minus
3R 32079331 3R 25206913..25207048 152..17 680 100 Minus
Blast to na_te.dros performed on 2015-02-10 06:56:50 has no hits.

BO11669.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:12 Download gff for BO11669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10244-PA 1..868 17..885 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:30 Download gff for BO11669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10244-PA 1..868 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:05:59 Download gff for BO11669.5prime
Subject Subject Range Query Range Percent Splice Strand
Cad96Ca-RA 210..1077 17..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:42:17 Download gff for BO11669.5prime
Subject Subject Range Query Range Percent Splice Strand
Cad96Ca-RA 210..1077 17..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:42:17 Download gff for BO11669.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25204046..25204517 413..885 99 <- Minus
3R 25204583..25204842 153..412 100 <- Minus
3R 25206913..25207048 17..152 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:05:59 Download gff for BO11669.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21029768..21030239 413..885 99 <- Minus
arm_3R 21030305..21030564 153..412 100 <- Minus
arm_3R 21032635..21032770 17..152 100   Minus

BO11669.complete Sequence

2353 bp assembled on 2008-01-17

GenBank Submission: FJ632150

> BO11669.complete
GAAGTTATCAGTCGACATGGTTTATCACCATCACAACCACGAAAGTCGGA
TAATACACTGCAGAAAACAATTAACTTCCTGGCGGAGAAGAAGCCTGCTG
CTGACCATCATTGTGGTCACAGCCACAGTGGTTTCACTGATTTCACAAGA
AGCCGAGGCCCACAATCAGAATGCACCACCGATTCTATATGTTCGCGAAC
GCAACTGGCGTATTTCGGAGACCGAGAAAGTTGGCCAGATAATCGATAGA
GTGCGGGCGGAGGATCCGGATGGCGATGATCTGATATTTGGCATAGAACC
GCGATTCAGTCTGCCTGGTGGTGAAAACGATGCTAGTCCTCCGGAGAAGA
TACCCTTTCAAATTGATCGAGAAACGGGAGTGGTAACTCTCAATGAAAGT
TTGGCAGGAAGGGCTGGTCAGAATTTTCTCATCTATATAACTGTCACCGA
TGGCTCCTATACGGCAAAGAATGAGGTTTTCATCAATATCTTGGGCGAGC
GGGAGAATAGCTCCGGCTATCGACCGCAGACATCAATTTCGAACGTGGTG
CACAATATATCGCAATTCCTTCCACGTTTTGACCAGCTGCCCGGTGTTCA
ATCCATCCGGAATGGGCTGCCAAACAGCCGACCAGGCGGTTGGTATCCAC
CGGTGCCCCAGAACAATATATTCGGTCCGCCGCCATTCGGTAACAACTAC
CCACCGCCTCCGCCGAATATTCCCGGCGTGCGGGGAGAGCAGAGTGGAGA
AGAGGAGCAGCCGGATGAGGAGGTGACACCCACAACACCCGTCAGAATCA
GCTCCACCACGCCGAAGAGTCGCACCAAACTGACGCCGATAACTGCCAAT
AATTCAACGAGAGTCGAATCCGCAATCCCCGCGGAGACAACGACACCGAG
TGGCGGCCACCATAATAATAGCTCCAGTCCCATCACAATTTTCTCCCTCA
AGTCCGGCACAATTCCGATTGTGGTCACCGTGGGCGGATTCTTTGTCGCC
ATCGCCGTGCTTCTGGCGTACTTGTGCCGCCGACGCCTCTGCGCCATCAG
CAGGACGCTAAAGAAGACCAAGGAGAAGGAGGAGCTGGCCAAGAAGTCCA
ACCAAAGCCAGCTGAGCAGCACGCTGACCGACGACAGCCGCAACTCGATG
GTCATGCAGCAGTGGCAAGGACCTGTGGCCTTCGCCAATCGCTATGTTCC
CTGGGAGCGGGATCAGCAGATGGGCATTGCAACGTCCCAGTTATCAACAG
GTGTCACCAATGGCGGAGTGTCCTCCCCCGGAGTGCCCAGTCCCGGGACA
GGTGAGCCGGGTTCCAACTTGGGCCCGGGCTGCTTGACAGGTGGAGCAGG
AAGTTCCGGCGCACCGGAAAACGCTTTTGCCGGCGAGGCCAACTGCGACC
GCTGGGAATTCCCCAGGTACCGATTGAAGTTCTTCAATATCTTGGGCGAA
GGAGCCTTCGGACAAGTTTGGCGCTGCGAGGCCACTAATATAAATGGCAA
CGAGGGCATTACAACCGTGGCTGTGAAGACGCTCAAGGAAAGTGCCACCG
AAGTGGATCGCAAGGACCTCTTATCCGAACTGGAGGTAATGAAATCTCTG
GAGCCACACATCAATGTTGTTCATTTGTTGGGCTGCTGCACGGACAAGGA
TCCCACATTTGTGATTCTGGAGTACGTGAATCGGGGAAAACTGCAAACGT
ACCTACGCAGCTCACGCGCCGAAAGGCACTATGGAAACACTCATGGAAAG
TCAAATGTACTAACGTCCTGCGACCTAACATCCTTTATGTATCAAGTAGC
TAAGGGCATGGACTACCTAACATCTCGAGGAATTATCCATCGTGACTTGG
CTGCTCGAAATATTCTCATAACCGATGATCACACTTGCAAAGTTGCGGAC
TTTGGCTTCGCACGAGATGTAATCACCTCGAAGATTTATGAAAGAAAAAG
CGAGGGCAAGCTGCCCATCAGATGGATGGCTACAGAGTCGCTATACGACA
ATATATTCTCCGTAAAGTCGGATATCTGGAGCTTCGGCATACTGATGTGG
GAAATTGTGACGCTGGGATCGACGCCCTACCCTGGCATATCAGCAGCAGA
TGTGATGCGAAAGGTGAGGGATGGATATCGTCTGGAGAAGCCCGAGCACT
GTCGTCGGGAGCTGTACAACATAATGTACTACTGCTGGTCCCACGATCCC
CAGGAGCGTCCTCTATTCGCGGAAATAATCCAAATGCTCGACAAGCTGCT
GCACACGGAAATGGATTATATCGAACTCGAGCGGTTTCCCGATCACAACT
ACTACAATATCGTTAGTCTTAGTGGTGAAAAGTTGGCAAGCTTTCTAGAC
CAT

BO11669.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
Cad96Ca-RA 2322 CG10244-PA 1..2319 17..2335 11595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
Cad96Ca-RA 2939 CG10244-RA 210..2528 17..2335 11595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25203701..25204518 1229..412 4090 100 Minus
3R 32079331 3R 25202295..25202563 1497..1229 1345 100 Minus
3R 32079331 3R 25204582..25204844 413..151 1315 100 Minus
3R 32079331 3R 25197982..25198205 2335..2112 1120 100 Minus
3R 32079331 3R 25198267..25198414 2115..1968 740 100 Minus
3R 32079331 3R 25198838..25198980 1726..1584 715 100 Minus
3R 32079331 3R 25198474..25198613 1971..1832 700 100 Minus
3R 32079331 3R 25206913..25207048 152..17 680 100 Minus
3R 32079331 3R 25198675..25198782 1831..1724 540 100 Minus
3R 32079331 3R 25201558..25201649 1587..1496 460 100 Minus
Blast to na_te.dros performed 2014-11-27 16:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
diver 6112 diver Tinker 6112bp 5532..5698 1823..1985 149 58.6 Plus

BO11669.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:52 Download gff for BO11669.complete
Subject Subject Range Query Range Percent Splice Strand
Cad96Ca-RA 1..2322 17..2336 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:40 Download gff for BO11669.complete
Subject Subject Range Query Range Percent Splice Strand
Cad96Ca-RA 208..2526 17..2337 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:30 Download gff for BO11669.complete
Subject Subject Range Query Range Percent Splice Strand
Cad96Ca-RA 210..2528 17..2337 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:52 Download gff for BO11669.complete
Subject Subject Range Query Range Percent Splice Strand
Cad96Ca-RA 208..2526 17..2335 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:12 Download gff for BO11669.complete
Subject Subject Range Query Range Percent Splice Strand
Cad96Ca-RA 210..2528 17..2337 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:12 Download gff for BO11669.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25202296..25202563 1229..1496 100 <- Minus
3R 25203702..25204517 413..1228 100 <- Minus
3R 25204583..25204842 153..412 100 <- Minus
3R 25206913..25207048 17..152 100   Minus
3R 25201560..25201648 1497..1585 100 <- Minus
3R 25197980..25198203 2114..2337 99 <- Minus
3R 25198269..25198410 1972..2113 100 <- Minus
3R 25198474..25198613 1832..1971 100 <- Minus
3R 25198675..25198780 1726..1831 100 <- Minus
3R 25198839..25198978 1586..1725 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:30 Download gff for BO11669.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21024196..21024335 1832..1971 100 <- Minus
arm_3R 21024397..21024502 1726..1831 100 <- Minus
arm_3R 21024561..21024700 1586..1725 100 <- Minus
arm_3R 21027282..21027370 1497..1585 100 <- Minus
arm_3R 21023702..21023925 2114..2337 99 <- Minus
arm_3R 21023991..21024132 1972..2113 100 <- Minus
arm_3R 21029424..21030239 413..1228 100 <- Minus
arm_3R 21028018..21028285 1229..1496 100 <- Minus
arm_3R 21030305..21030564 153..412 100 <- Minus
arm_3R 21032635..21032770 17..152 100   Minus

BO11669.pep Sequence

Translation from 16 to 2353

> BO11669.pep
MVYHHHNHESRIIHCRKQLTSWRRRSLLLTIIVVTATVVSLISQEAEAHN
QNAPPILYVRERNWRISETEKVGQIIDRVRAEDPDGDDLIFGIEPRFSLP
GGENDASPPEKIPFQIDRETGVVTLNESLAGRAGQNFLIYITVTDGSYTA
KNEVFINILGERENSSGYRPQTSISNVVHNISQFLPRFDQLPGVQSIRNG
LPNSRPGGWYPPVPQNNIFGPPPFGNNYPPPPPNIPGVRGEQSGEEEQPD
EEVTPTTPVRISSTTPKSRTKLTPITANNSTRVESAIPAETTTPSGGHHN
NSSSPITIFSLKSGTIPIVVTVGGFFVAIAVLLAYLCRRRLCAISRTLKK
TKEKEELAKKSNQSQLSSTLTDDSRNSMVMQQWQGPVAFANRYVPWERDQ
QMGIATSQLSTGVTNGGVSSPGVPSPGTGEPGSNLGPGCLTGGAGSSGAP
ENAFAGEANCDRWEFPRYRLKFFNILGEGAFGQVWRCEATNINGNEGITT
VAVKTLKESATEVDRKDLLSELEVMKSLEPHINVVHLLGCCTDKDPTFVI
LEYVNRGKLQTYLRSSRAERHYGNTHGKSNVLTSCDLTSFMYQVAKGMDY
LTSRGIIHRDLAARNILITDDHTCKVADFGFARDVITSKIYERKSEGKLP
IRWMATESLYDNIFSVKSDIWSFGILMWEIVTLGSTPYPGISAADVMRKV
RDGYRLEKPEHCRRELYNIMYYCWSHDPQERPLFAEIIQMLDKLLHTEMD
YIELERFPDHNYYNIVSLSGEKLASFLDH

BO11669.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
Cad96Ca-PA 773 CG10244-PA 1..773 1..773 4087 100 Plus
htl-PC 729 CG7223-PC 392..702 445..755 686 42.5 Plus
htl-PA 729 CG7223-PA 392..702 445..755 686 42.5 Plus
htl-PB 729 CG7223-PB 392..702 445..755 686 42.5 Plus
Ret-PA 1235 CG14396-PA 741..1056 441..755 684 42.5 Plus