Clone Sequence Records
BO11670.3prime Sequence
883 bp (820 high quality bases) assembled on 2006-04-19
> BO11670.3prime
ATGGTCTAGAAAGCTTGCCGTCTGCAGCGAAGTTTGGGTTCCATTTGGAC
TCGCTTGGTAGGATTCGTTTTCAGTAACTATCTCGACGTCATCATCTTTG
ATGGATTTGAGATCGCGTCCAATACTTTCCATGTTCAAGCTCAAGGCAGC
TGCAGCCACATTATTATTCACTTCATCCAGCTTGGGCTGGCGTAGGCAGT
TCTCGTCGTTTGAGGCCTCACGTTTAACCCTTGCCGGTGGCTGCTCTGTC
GCATCCGCCGAACTTCGCAGATTGAGCAGCTCCCGGCGAATGGCCTCTAC
ATTGTCTTCAAGGTTGGGTTTCTTGATCTCCGAGTCATTCGATGATTTCG
GCTGAGTAGAATTCACCATTAGGGCTAGTGGAATGGGCAATCGTTTGATA
AGCGCTTCTTTATCTACGGTCGAATTCCTGAGTAACTCTCCGGTTTTGTA
GGATAGAGGTTCAAAAACGCCGGCATGGGCCTCCTTTTCATCGCGCAAAT
GTGTATTTTCCGTGAGTATGTCCATTAACGATGCCTGCCGCCTTCTCTCC
TTCTTTTCGTCCGCAACTGGCTGCGACTCCTTAAGCTTAATTTCAGCCTT
CTTCGGTTCCTCGGCAAATTTCGCACCAGTATCCAAAGGCTCATCTTTCT
GTAACTCCAAAGGTGGCTGATTAAATGAATTTTTCTTGGCCAACTCTTCG
TTTAGCTCCCCAACGGTTTTCGCCAATAGTTTTTTGGTCTCCTTTAATTC
CTTTTGGGTTTTGAGTAGCTCATCTGCATTAGCCTTACTTTCCTTTTGCT
CTTCGGCAGCCACGTCCTCCTCCTTCTTGATGGCCGCTCCATCAATTGTA
TTGCTTGCTGATAACAAGCTCGATCCAATTTTT
BO11670.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30394-PA | 2496 | CG30394-RA | 1629..2493 | 883..19 | 4325 | 100 | Minus |
| CG30394-PB | 2496 | CG30394-RB | 1629..2493 | 883..19 | 4325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30394-RB | 2959 | CG30394-RB | 1971..2835 | 883..19 | 4325 | 100 | Minus |
| CG30394-RA | 3055 | CG30394-RA | 2067..2931 | 883..19 | 4325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21320164..21321028 | 19..883 | 4325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:33:03 has no hits.
BO11670.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:13 Download gff for
BO11670.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30394-PB | 1629..2496 | 15..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:31 Download gff for
BO11670.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30394-PB | 1629..2496 | 15..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:54 Download gff for
BO11670.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30394-RA | 2067..2934 | 15..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:57 Download gff for
BO11670.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30394-RA | 2067..2934 | 15..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:57 Download gff for
BO11670.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21320161..21321028 | 15..883 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:54 Download gff for
BO11670.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17207666..17208533 | 15..883 | 99 | | Plus |
BO11670.5prime Sequence
601 bp (517 high quality bases) assembled on 2006-04-19
> BO11670.5prime
GAAGTTATCAGTCGACATGTTGGCCCACTCCGCGCATGTAATGACGTTGG
CCAACAGCATCATAGGCGTCGGCATCTTGGCCATGCCGTTCTGCTTCCAG
AAGTGCGGCATCCTGTTATCCATCGTTCTTCTTGTGCTAAGCAATGGAAT
AACCCGGGTTTGCTGCCACTATCTTATTAAAACCTCGCTGCTGACACGTA
GGAGGAGCTTCGAGATGCTCGGTCTCCATGCTTTCGGTACTTCCGGCAAG
CTGCTGGTGGAGCTGTGCATCATTGGCTACCTGATTGGAACGTGCATCAC
GTATTTTGTGGTCGTGGGCGATCTGGGTCCGCAGATAATCGCCAAGATTT
TCGCGCTGGACGTGGCAGATCACCTGCATCTGCGGAGTCTGGTCATGGTC
GTAGTCACTGTGGTGTGCATAGTGCCCCTCGGCATGCTCCGCAATGTGGA
CAGCTTGTCCGCCGTTTGCACCGCGTCCATAGGTTTCTATGTCTGCCTAA
TTCTCAAGATCGTGTTGGAGGCCCAGCCACACATTACGGCCAACGACTGG
ACGGAAAAGGTGCTCTACTGGGAAACGGCGGGCGTACTCCATGCCTACCC
A
BO11670.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30394-PA | 2496 | CG30394-RA | 1..575 | 17..591 | 2850 | 99.8 | Plus |
| CG30394-PB | 2496 | CG30394-RB | 1..575 | 17..591 | 2850 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30394-RB | 2959 | CG30394-RB | 343..928 | 17..601 | 2890 | 99.7 | Plus |
| CG30394-RA | 3055 | CG30394-RA | 439..1024 | 17..601 | 2890 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21322506..21322882 | 393..17 | 1885 | 100 | Minus |
| 2R | 25286936 | 2R | 21322246..21322457 | 601..391 | 995 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:17:31 has no hits.
BO11670.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:14 Download gff for
BO11670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30394-PB | 1..585 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:33 Download gff for
BO11670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30394-PB | 1..585 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:25:44 Download gff for
BO11670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30394-RA | 439..1023 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:46:40 Download gff for
BO11670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30394-RA | 439..1023 | 17..600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:46:40 Download gff for
BO11670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21322508..21322882 | 17..391 | 100 | | Minus |
| 2R | 21322247..21322456 | 392..600 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:25:44 Download gff for
BO11670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17209752..17209961 | 392..600 | 99 | <- | Minus |
| arm_2R | 17210013..17210387 | 17..391 | 100 | | Minus |
BO11670.complete Sequence
2527 bp assembled on 2008-11-10
GenBank Submission: KX798289
> BO11670.complete
GAAGTTATCAGTCGACATGTTGGCCCACTCCGCGCATGTAATGACGTTGG
CCAACAGCATCATAGGCGTCGGCATCTTGGCCATGCCGTTCTGCTTCCAG
AAGTGCGGCATCCTGTTATCCATCGTTCTTCTTGTGCTAAGCAATGGAAT
AACCCGGGTTTGCTGCCACTATCTTATTAAAACCTCGCTGCTGACACGTA
GGAGGAGCTTCGAGATGCTCGGTCTCCATGCTTTCGGTACTTCCGGCAAG
CTGCTGGTGGAGCTGTGCATCATTGGCTACCTGATTGGAACGTGCATCAC
GTATTTTGTGGTCGTGGGCGATCTGGGTCCGCAGATAATCGCCAAGATTT
TCGCGCTGGACGTGGCAGATCACCTGCATCTGCGGAGTCTGGTCATGGTC
GTAGTCACTGTGGTGTGCATAGTGCCCCTCGGCATGCTCCGCAATGTGGA
CAGCTTGTCCGCCGTTTGCACCGCGTCCATAGGTTTCTATGTCTGCCTAA
TTCTCAAGATCGTGTTGGAGGCCCAGCCACACATTACGGCCAACGACTGG
ACGGAAAAGGTGCTCTACTGGGAACCGGCGGGCGTACTCCAATGCCTACC
CATCTTCAGCATGGCTCTCTCCTGCCAAATGCAACTATTTGAGGTCTTTG
AGAGCATTAACAACCAGAGTCTCGACAAATTAAACGGCATCGTCCGCAAT
GCCACTTGGATTTGTACTTTTGTTTACATATCTGTTGGTTTTTTCGGATA
TGTGGCGTTTTGTACGCACACCTTTTCGGGCAACATTCTGGTGAACTTAT
CGACCTCCTTTGGTAGCGATATCATTAAAATTGGCTTTGTGCTGTCAATT
GCTTTTAGTTTCCCATTGGTAATCTTTCCCTGCAGAGCCAGTCTCTATTC
GCTGCTATACAGAAAGGGTCATACGGAAAGCAGTAGCTACATACCTGAAC
AACGCTTTCGATTCATCACTATCTTCATCGTTGTCTTTTCGTTATGCGTG
GCTTTGGTTATTCCCTCCGTGGAGCTTATAATTGGCTTGGTGGGTTCCAC
CATTGGCGTAGCCATTTGTATAATGTTCCCCGCATCCAGTTTTCGAAAAA
TCATCAAAAAGGAATCTATGGAACGTACGCTTGCCCAGTTTGTATTCGTA
AGTGGATTTCTATTGATGATCCTGGGAACGTATGCGAACCTAAGTGCAAT
TGATGAAAAGAGCTCCGGCCCGGAGTTTGATATGGTTGCCATAGGCACCC
CTCTGTATCCCGATGGCCAAGTGCCAGCTGTCGTCGGCGAGCTACCAAAA
CATTTGGCCAAAGAATCCATTGACAGTGAAAAGAACCTATTGTTAAAGAA
ACTGGATGTCCAAAATCCAGACAAATTAAAACAAACCGTTGAGGATAAAG
TTGTTGATATGCCGGAGGTAGTGCAATCAGCTTCCTCCGACAACCCACCG
TTGCCACCACTGCCCATCGATGAAGTCCATGTAGTTCCCATAGATAGTAA
AAATTCTGAAACGGATATTAAAAAACTACCAGTAGAAGCCGTAGAAGCAA
ACCCACCAGAAGCCAAACCACTCGATGTCAACCTTACCGTGGATAAGCCC
AAGAATAATCCGCCTGCTGTTGCTGCATCGCTTCCAGATAAACCAAAAAT
TGGATCGAGCTTGTTATCAGCAAGCAATACAATTGATGGAGCGGCCATCA
AGAAGGAGGAGGACGTGGCTGCCGAAGAGCAAAAGGAAAGTAAGGCTAAT
GCAGATGAGCTACTCAAAACCCAAAAGGAATTAAAGGAGACCAAAAAACT
ATTGGCGAAAACCGTTGGGGAGCTAAACGAAGAGTTGGCCAAGAAAAATT
CATTTAATCAGCCACCTTTGGAGTTACAGAAAGATGAGCCTTTGGATACT
GGTGCGAAATTTGCCGAGGAACCGAAGAAGGCTGAAATTAAGCTTAAGGA
GTCGCAGCCAGTTGCGGACGAAAAGAAGGAGAGAAGGCGGCAGGCATCGT
TAATGGACATACTCACGGAAAATACACATTTGCGCGATGAAAAGGAGGCC
CATGCCGGCGTTTTTGAACCTCTATCCTACAAAACCGGAGAGTTACTCAG
GAATTCGACCGTAGATAAAGAAGCGCTTATCAAACGATTGCCCATTCCAC
TAGCCCTAATGGTGAATTCTACTCAGCCGAAATCATCGAATGACTCGGAG
ATCAAGAAACCCAACCTTGAAGACAATGTAGAGGCCATTCGCCGGGAGCT
GCTCAATCTGCGAAGTTCGGCGGATGCGACAGAGCAGCCACCGGCAAGGG
TTAAACGTGAGGCCTCAAACGACGAGAACTGCCTACGCCAGCCCAAGCTG
GATGAAGTGAATAATAATGTGGCTGCAGCTGCCTTGAGCTTGAACATGGA
AAGTATTGGACGCGATCTCAAATCCATCAAAGATGATGACGTCGAGATAG
TTACTGAAAACGAATCCTACCAAGCGAGTCCAAATGGAACCCAAACTTCG
CTGCAGACGGCAAGCTTTCTAGACCAT
BO11670.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:22:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30394-RB | 2496 | CG30394-PB | 1..2493 | 17..2509 | 12465 | 100 | Plus |
| CG30394-RA | 2496 | CG30394-PA | 1..2493 | 17..2509 | 12465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:22:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30394-RB | 2959 | CG30394-RB | 343..2835 | 17..2509 | 12465 | 100 | Plus |
| CG30394-RA | 3055 | CG30394-RA | 439..2931 | 17..2509 | 12465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:22:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21320164..21321758 | 2509..915 | 7975 | 100 | Minus |
| 2R | 25286936 | 2R | 21322506..21322882 | 393..17 | 1885 | 100 | Minus |
| 2R | 25286936 | 2R | 21322217..21322457 | 631..391 | 1205 | 100 | Minus |
| 2R | 25286936 | 2R | 21322008..21322157 | 780..631 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 21321811..21321949 | 917..779 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:22:17 has no hits.
BO11670.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:23 Download gff for
BO11670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30394-RB | 574..3069 | 17..2513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:58 Download gff for
BO11670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30394-RA | 444..2931 | 22..2511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:17 Download gff for
BO11670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30394-RB | 579..3066 | 22..2511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:01 Download gff for
BO11670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30394-RA | 444..2931 | 22..2511 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:01 Download gff for
BO11670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21320162..21321756 | 917..2511 | 99 | <- | Minus |
| 2R | 21321812..21321948 | 780..916 | 100 | <- | Minus |
| 2R | 21322009..21322157 | 631..779 | 100 | <- | Minus |
| 2R | 21322218..21322456 | 392..630 | 100 | <- | Minus |
| 2R | 21322508..21322877 | 22..391 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:58 Download gff for
BO11670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17209723..17209961 | 392..630 | 100 | <- | Minus |
| arm_2R | 17210013..17210382 | 22..391 | 100 | | Minus |
| arm_2R | 17207667..17209261 | 917..2511 | 99 | <- | Minus |
| arm_2R | 17209317..17209453 | 780..916 | 100 | <- | Minus |
| arm_2R | 17209514..17209662 | 631..779 | 100 | <- | Minus |
BO11670.pep Sequence
Translation from 16 to 2527
> BO11670.pep
MLAHSAHVMTLANSIIGVGILAMPFCFQKCGILLSIVLLVLSNGITRVCC
HYLIKTSLLTRRRSFEMLGLHAFGTSGKLLVELCIIGYLIGTCITYFVVV
GDLGPQIIAKIFALDVADHLHLRSLVMVVVTVVCIVPLGMLRNVDSLSAV
CTASIGFYVCLILKIVLEAQPHITANDWTEKVLYWEPAGVLQCLPIFSMA
LSCQMQLFEVFESINNQSLDKLNGIVRNATWICTFVYISVGFFGYVAFCT
HTFSGNILVNLSTSFGSDIIKIGFVLSIAFSFPLVIFPCRASLYSLLYRK
GHTESSSYIPEQRFRFITIFIVVFSLCVALVIPSVELIIGLVGSTIGVAI
CIMFPASSFRKIIKKESMERTLAQFVFVSGFLLMILGTYANLSAIDEKSS
GPEFDMVAIGTPLYPDGQVPAVVGELPKHLAKESIDSEKNLLLKKLDVQN
PDKLKQTVEDKVVDMPEVVQSASSDNPPLPPLPIDEVHVVPIDSKNSETD
IKKLPVEAVEANPPEAKPLDVNLTVDKPKNNPPAVAASLPDKPKIGSSLL
SASNTIDGAAIKKEEDVAAEEQKESKANADELLKTQKELKETKKLLAKTV
GELNEELAKKNSFNQPPLELQKDEPLDTGAKFAEEPKKAEIKLKESQPVA
DEKKERRRQASLMDILTENTHLRDEKEAHAGVFEPLSYKTGELLRNSTVD
KEALIKRLPIPLALMVNSTQPKSSNDSEIKKPNLEDNVEAIRRELLNLRS
SADATEQPPARVKREASNDENCLRQPKLDEVNNNVAAAALSLNMESIGRD
LKSIKDDDVEIVTENESYQASPNGTQTSLQTASFLDH
BO11670.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30394-PB | 831 | CG30394-PB | 1..831 | 1..831 | 4193 | 100 | Plus |
| CG30394-PA | 831 | CG30394-PA | 1..831 | 1..831 | 4193 | 100 | Plus |
| CG13743-PB | 508 | CG13743-PB | 86..475 | 13..387 | 207 | 21.7 | Plus |
| CG13743-PA | 528 | CG13743-PA | 106..495 | 13..387 | 207 | 21.7 | Plus |
| CG13384-PL | 482 | CG13384-PL | 88..476 | 16..395 | 172 | 23.1 | Plus |
