Clone Sequence Records
BO11678.3prime Sequence
416 bp (415 high quality bases) assembled on 2006-04-19
> BO11678.3prime
ATGGTCTAGAAAGCTTGCCTCGGGGGCTTCCTCTGCTGTTGCGGTGGCAC
TGGCGTTGGCATTTTCGGCAGTGTTGGAATCCTTCTTGCTGGCCTTGCTC
TCCTTTTTCTCCTTGACCACTTTACGATAGACCTCGAGATCCTGCGTCAG
AGAGGGCACGAAGCTTTCGAAGTCTAGCTCGGTGAGGGTCTGTAGAATAT
CCTTGGCCGTGATGGTCTTGTGGTTCTGCTTGTGGGCCAACGCCGTCGAC
GAGGATGTCACGAAGATGGCAAACACAGATGCCGCTCGGGCGATCGCTGC
TCGCGCTTCCTTGCTGACACTAGCTGACTCCGGCAGTGCTTCCTTGATGA
GCCGGCCAATCACGGCATTCGGCAGGTTAAGATCCTCGATGCGCTCGACC
ATGTCGACTGATAACT
BO11678.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13399-PA | 387 | Chrac-14-RA | 1..384 | 402..19 | 1920 | 100 | Minus |
CG13399-PB | 387 | Chrac-14-RB | 1..384 | 402..19 | 1920 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:52:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chrac-14-RB | 592 | CG13399-RB | 101..484 | 402..19 | 1920 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:52:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8437505..8437888 | 402..19 | 1920 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 22:52:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1b | 5171 | Rt1b RT1B 5150bp | 4048..4091 | 110..67 | 103 | 70.5 | Minus |
BO11678.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:27 Download gff for
BO11678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13399-PB | 1..387 | 16..402 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:50 Download gff for
BO11678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13399-PB | 1..387 | 16..402 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:50:29 Download gff for
BO11678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus201-RB | 94..484 | 19..410 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:45 Download gff for
BO11678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chrac-14-RB | 94..484 | 19..410 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:45 Download gff for
BO11678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8437498..8437888 | 19..410 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:50:29 Download gff for
BO11678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8437498..8437888 | 19..410 | 99 | | Minus |
BO11678.5prime Sequence
416 bp (415 high quality bases) assembled on 2006-04-19
> BO11678.5prime
GAAGTTATCAGTCGACATGGTCGAGCGCATCGAGGATCTTAACCTGCCGA
ATGCCGTGATTGGCCGGCTCATCAAGGAAGCACTGCCGGAGTCAGCTAGT
GTCAGCAAGGAAGCGCGAGCAGCGATCGCCCGAGCGGCATCTGTGTTTGC
CATCTTCGTGACATCCTCGTCGACGGCGTTGGCCCACAAGCAGAACCACA
AGACCATCACGGCCAAGGATATTCTACAGACCCTCACCGAGCTAGACTTC
GAAAGCTTCGTGCCCTCTCTGACGCAGGATCTCGAGGTCTATCGTAAAGT
GGTCAAGGAGAAAAAGGAGAGCAAGGCCAGCAAGAAGGATTCCAACACTG
CCGAAAATGCCAACGCCAGTGCCACCGCAACAGCAGAGGAAGCCCCCGAG
GCAAGCTTTCTAGACC
BO11678.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13399-PA | 387 | Chrac-14-RA | 1..384 | 17..400 | 1920 | 100 | Plus |
CG13399-PB | 387 | Chrac-14-RB | 1..384 | 17..400 | 1920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:21:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chrac-14-RB | 592 | CG13399-RB | 101..484 | 17..400 | 1920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:21:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8437505..8437888 | 17..400 | 1920 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 22:21:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1b | 5171 | Rt1b RT1B 5150bp | 4048..4091 | 309..352 | 103 | 70.5 | Plus |
BO11678.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:28 Download gff for
BO11678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13399-PB | 1..387 | 17..403 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:52 Download gff for
BO11678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13399-PB | 1..387 | 17..403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:38:46 Download gff for
BO11678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus201-RB | 94..484 | 9..400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:53 Download gff for
BO11678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chrac-14-RB | 94..484 | 9..400 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:53 Download gff for
BO11678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8437498..8437888 | 9..400 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:38:46 Download gff for
BO11678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8437498..8437888 | 9..400 | 99 | | Plus |
BO11678.complete Sequence
418 bp assembled on 2006-12-18
GenBank Submission: FJ632152
> BO11678.complete
GAAGTTATCAGTCGACATGGTCGAGCGCATCGAGGATCTTAACCTGCCGA
ATGCCGTGATTGGCCGGCTCATCAAGGAAGCACTGCCGGAGTCAGCTAGT
GTCAGCAAGGAAGCGCGAGCAGCGATCGCCCGAGCGGCATCTGTGTTTGC
CATCTTCGTGACATCCTCGTCGACGGCGTTGGCCCACAAGCAGAACCACA
AGACCATCACGGCCAAGGATATTCTACAGACCCTCACCGAGCTAGACTTC
GAAAGCTTCGTGCCCTCTCTGACGCAGGATCTCGAGGTCTATCGTAAAGT
GGTCAAGGAGAAAAAGGAGAGCAAGGCCAGCAAGAAGGATTCCAACACTG
CCGAAAATGCCAACGCCAGTGCCACCGCAACAGCAGAGGAAGCCCCCGAG
GCAAGCTTTCTAGACCAT
BO11678.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chrac-14-RB | 387 | CG13399-PB | 1..384 | 17..400 | 1920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chrac-14-RB | 592 | CG13399-RB | 101..484 | 17..400 | 1920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8437505..8437888 | 17..400 | 1920 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1b | 5171 | Rt1b RT1B 5150bp | 4048..4091 | 309..352 | 103 | 70.5 | Plus |
BO11678.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:54 Download gff for
BO11678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chrac-14-RB | 1..387 | 17..403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:58 Download gff for
BO11678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chrac-14-RA | 88..478 | 9..400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:15 Download gff for
BO11678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus201-RB | 101..484 | 17..402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:54 Download gff for
BO11678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chrac-14-RA | 88..478 | 9..400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:05 Download gff for
BO11678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chrac-14-RB | 101..484 | 17..402 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:05 Download gff for
BO11678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8437505..8437888 | 17..402 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:15 Download gff for
BO11678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8437505..8437888 | 17..402 | 99 | | Plus |
BO11678.pep Sequence
Translation from 16 to 418
> BO11678.pep
MVERIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTS
SSTALAHKQNHKTITAKDILQTLTELDFESFVPSLTQDLEVYRKVVKEKK
ESKASKKDSNTAENANASATATAEEAPEASFLDH
BO11678.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chrac-14-PB | 128 | CG13399-PB | 1..128 | 1..128 | 612 | 100 | Plus |