Clone BO11678 Report

Search the DGRC for BO11678

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptChrac-14-RA
Protein status:BO11678.pep: validated full length
Sequenced Size:418

Clone Sequence Records

BO11678.3prime Sequence

416 bp (415 high quality bases) assembled on 2006-04-19

> BO11678.3prime
ATGGTCTAGAAAGCTTGCCTCGGGGGCTTCCTCTGCTGTTGCGGTGGCAC
TGGCGTTGGCATTTTCGGCAGTGTTGGAATCCTTCTTGCTGGCCTTGCTC
TCCTTTTTCTCCTTGACCACTTTACGATAGACCTCGAGATCCTGCGTCAG
AGAGGGCACGAAGCTTTCGAAGTCTAGCTCGGTGAGGGTCTGTAGAATAT
CCTTGGCCGTGATGGTCTTGTGGTTCTGCTTGTGGGCCAACGCCGTCGAC
GAGGATGTCACGAAGATGGCAAACACAGATGCCGCTCGGGCGATCGCTGC
TCGCGCTTCCTTGCTGACACTAGCTGACTCCGGCAGTGCTTCCTTGATGA
GCCGGCCAATCACGGCATTCGGCAGGTTAAGATCCTCGATGCGCTCGACC
ATGTCGACTGATAACT

BO11678.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13399-PA 387 Chrac-14-RA 1..384 402..19 1920 100 Minus
CG13399-PB 387 Chrac-14-RB 1..384 402..19 1920 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
Chrac-14-RB 592 CG13399-RB 101..484 402..19 1920 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8437505..8437888 402..19 1920 100 Minus
Blast to na_te.dros performed 2015-02-10 22:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1b 5171 Rt1b RT1B 5150bp 4048..4091 110..67 103 70.5 Minus

BO11678.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:27 Download gff for BO11678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13399-PB 1..387 16..402 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:50 Download gff for BO11678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13399-PB 1..387 16..402 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:50:29 Download gff for BO11678.3prime
Subject Subject Range Query Range Percent Splice Strand
mus201-RB 94..484 19..410 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:45 Download gff for BO11678.3prime
Subject Subject Range Query Range Percent Splice Strand
Chrac-14-RB 94..484 19..410 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:45 Download gff for BO11678.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8437498..8437888 19..410 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:50:29 Download gff for BO11678.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8437498..8437888 19..410 99   Minus

BO11678.5prime Sequence

416 bp (415 high quality bases) assembled on 2006-04-19

> BO11678.5prime
GAAGTTATCAGTCGACATGGTCGAGCGCATCGAGGATCTTAACCTGCCGA
ATGCCGTGATTGGCCGGCTCATCAAGGAAGCACTGCCGGAGTCAGCTAGT
GTCAGCAAGGAAGCGCGAGCAGCGATCGCCCGAGCGGCATCTGTGTTTGC
CATCTTCGTGACATCCTCGTCGACGGCGTTGGCCCACAAGCAGAACCACA
AGACCATCACGGCCAAGGATATTCTACAGACCCTCACCGAGCTAGACTTC
GAAAGCTTCGTGCCCTCTCTGACGCAGGATCTCGAGGTCTATCGTAAAGT
GGTCAAGGAGAAAAAGGAGAGCAAGGCCAGCAAGAAGGATTCCAACACTG
CCGAAAATGCCAACGCCAGTGCCACCGCAACAGCAGAGGAAGCCCCCGAG
GCAAGCTTTCTAGACC

BO11678.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13399-PA 387 Chrac-14-RA 1..384 17..400 1920 100 Plus
CG13399-PB 387 Chrac-14-RB 1..384 17..400 1920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
Chrac-14-RB 592 CG13399-RB 101..484 17..400 1920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8437505..8437888 17..400 1920 100 Plus
Blast to na_te.dros performed 2015-02-10 22:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1b 5171 Rt1b RT1B 5150bp 4048..4091 309..352 103 70.5 Plus

BO11678.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:28 Download gff for BO11678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13399-PB 1..387 17..403 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:52 Download gff for BO11678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13399-PB 1..387 17..403 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:38:46 Download gff for BO11678.5prime
Subject Subject Range Query Range Percent Splice Strand
mus201-RB 94..484 9..400 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:53 Download gff for BO11678.5prime
Subject Subject Range Query Range Percent Splice Strand
Chrac-14-RB 94..484 9..400 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:53 Download gff for BO11678.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8437498..8437888 9..400 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:38:46 Download gff for BO11678.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8437498..8437888 9..400 99   Plus

BO11678.complete Sequence

418 bp assembled on 2006-12-18

GenBank Submission: FJ632152

> BO11678.complete
GAAGTTATCAGTCGACATGGTCGAGCGCATCGAGGATCTTAACCTGCCGA
ATGCCGTGATTGGCCGGCTCATCAAGGAAGCACTGCCGGAGTCAGCTAGT
GTCAGCAAGGAAGCGCGAGCAGCGATCGCCCGAGCGGCATCTGTGTTTGC
CATCTTCGTGACATCCTCGTCGACGGCGTTGGCCCACAAGCAGAACCACA
AGACCATCACGGCCAAGGATATTCTACAGACCCTCACCGAGCTAGACTTC
GAAAGCTTCGTGCCCTCTCTGACGCAGGATCTCGAGGTCTATCGTAAAGT
GGTCAAGGAGAAAAAGGAGAGCAAGGCCAGCAAGAAGGATTCCAACACTG
CCGAAAATGCCAACGCCAGTGCCACCGCAACAGCAGAGGAAGCCCCCGAG
GCAAGCTTTCTAGACCAT

BO11678.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
Chrac-14-RB 387 CG13399-PB 1..384 17..400 1920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
Chrac-14-RB 592 CG13399-RB 101..484 17..400 1920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8437505..8437888 17..400 1920 100 Plus
Blast to na_te.dros performed 2014-11-28 00:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1b 5171 Rt1b RT1B 5150bp 4048..4091 309..352 103 70.5 Plus

BO11678.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:54 Download gff for BO11678.complete
Subject Subject Range Query Range Percent Splice Strand
Chrac-14-RB 1..387 17..403 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:58 Download gff for BO11678.complete
Subject Subject Range Query Range Percent Splice Strand
Chrac-14-RA 88..478 9..400 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:15 Download gff for BO11678.complete
Subject Subject Range Query Range Percent Splice Strand
mus201-RB 101..484 17..402 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:54 Download gff for BO11678.complete
Subject Subject Range Query Range Percent Splice Strand
Chrac-14-RA 88..478 9..400 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:05 Download gff for BO11678.complete
Subject Subject Range Query Range Percent Splice Strand
Chrac-14-RB 101..484 17..402 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:05 Download gff for BO11678.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8437505..8437888 17..402 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:15 Download gff for BO11678.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8437505..8437888 17..402 99   Plus

BO11678.pep Sequence

Translation from 16 to 418

> BO11678.pep
MVERIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTS
SSTALAHKQNHKTITAKDILQTLTELDFESFVPSLTQDLEVYRKVVKEKK
ESKASKKDSNTAENANASATATAEEAPEASFLDH

BO11678.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
Chrac-14-PB 128 CG13399-PB 1..128 1..128 612 100 Plus