Clone BO11681 Report

Search the DGRC for BO11681

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptHexo2-RA
Protein status:BO11681.pep:
Sequenced Size:1900

Clone Sequence Records

BO11681.3prime Sequence

834 bp (739 high quality bases) assembled on 2006-04-19

> BO11681.3prime
ATGGTCTAGAAAGCTTGCGAGGCACTGTCCTTCGTGGAGGACGCACCAGT
GCGGAATAACTGCATCCGCATGGATTCCGCGCGCCAGGAGTCGCTCCCGG
TAGCGGTAGAATCTTCTTTGGGCCAACAGGGCTGAAGACTTTGGATTTGA
CCACATTCGCTCGGCTGCTGCTCCAGCTCGCGGCCAGATTCGGGATTCCA
GTGAGTTCTGATCCACATACTCGCTCCACATGCACACCTCACCGCCGAGA
ACCTGATCCTTGCTGCGACCAACGGGCATGCCACTGGAGTACACGGTGCG
CCAGTTGTAGTACGATGTGCTGCCCCAGAAGCCGTGATCCAGGTACCAGG
CATTCTTCGTGGACACAATCAGTCGGTAGCCTCGCTGCAATAGCTCCCGA
TTGAGGGCATCCTGTGACTCCACCCATGTCTGGATTATGAACCGCTCCTT
GGGCAGGTAGGTCTCGATGTACCGGGGATTGGTGAGGTGACTGGACCAGA
TGATCACCGACTTCGGCTCCTTGATGCCCGGATACATACGCTCGTTAATC
TCGTCCCATGCATTGAGGTTCCGCTGATGGAATTGTGACCACAGCCGCAG
GAAGCTCTGCTCGCTGAGATCGTAGCCACGTGCCCGCATCCCATCCCGAA
TCTCGTCGGTGTTATTCCAGCAGGGAAGGAACACCTCGTCGCCGCCCATG
TGCAGGGTCTCCTCGGGAGCGCCCACCTCGGCTACGTCCTCGAAGATCTC
CTTGAGCACTGCGTACATATGATCGTTCAGGGGATTCAGTTGGCCGCACG
GTGGCTGTACACAGAATCTCCTCCAGGGCGATTG

BO11681.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1787-PA 1869 Hexo2-RA 1051..1866 834..19 4055 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
Hexo2-RA 2140 CG1787-RA 1208..2023 834..19 4065 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 11:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8711476..8712112 834..198 3170 99.8 Minus
X 23542271 X 8712182..8712361 198..19 900 100 Minus
Blast to na_te.dros performed on 2015-02-01 11:27:47 has no hits.

BO11681.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:31 Download gff for BO11681.3prime
Subject Subject Range Query Range Percent Splice Strand
Hexo2-PA 1051..1869 15..834 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:56 Download gff for BO11681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1787-PA 1051..1869 15..834 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:38:00 Download gff for BO11681.3prime
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 1208..2026 15..834 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:12:24 Download gff for BO11681.3prime
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 1208..2026 15..834 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:12:24 Download gff for BO11681.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8711476..8712112 198..834 99 -> Minus
X 8712183..8712364 15..197 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:38:00 Download gff for BO11681.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8605509..8606145 198..834 99 -> Minus
arm_X 8606216..8606397 15..197 98   Minus

BO11681.5prime Sequence

901 bp (776 high quality bases) assembled on 2006-04-19

> BO11681.5prime
GAAGTTATCAGTCGACATGCGGTTCAGCGGCTACAATCGTTATCAGTGCT
TTTGCTCTGCTGTTGGATCGCTGCTGCTATTATCCCTATTATCCTTCGCG
GTCGGCGCTGCGCTGACGCGGGCAGATGACGTCGGCAGCGACGCCGACGC
CGGCAGCGCCAGCAGGAAATGGCTGTGCAGCCGGACGGATATCTGCACCG
CGGAGGGCGAGATGGTGGCCGGACTGCAGTACGCGCCGGAGATCTTCGAG
AGCCAGCGGGATTGCCGACTGTCGTGCGGCAAGTACGGAGCCATCTGGCC
CATGCCCACCGGCAAGGAGTGCACCATATCGCACAGGCGGGTACGATTCG
ATCCGTGGAAGGTGCGTTTCCATGTTGTGGCGCCCGGCGAGGCGGCCACC
CAGTTTCTCAGGGAGACGAACCGGCTGTTCGTCTCGAATCTGCTGAAGGA
GTGCATACGAAACTGCACGCTGGAGACCAGCAAGCAGATTCTGGTCAGAT
CCACGGTGGCCAACGAGAGCCTCGTTCTGGACTGGCCCACCGACGAGAGC
TACGCCCTGGTGGTGCGAACCACTGAAACGGCCACCTTTGTGGACATCCA
AGCGACGACGGTGTACGGTGCACGTCATGCCTTCGAGACGCTGAGCAACC
TGGTCACCGGCAGCCTGTCCAATGGCCTGCTGATGGTCACCACGGCCAAC
ATCACCGATCGTCCGGCCTTTTCGCATCGCGGCGTCCTTCTGGATACGGC
CCGTAACTTTGTGCCGCTCAAGTTTATACGCAGCACCTTGGATGCGATGG
CGGCCAGTAAGCTGAATGTGCTCCACTGGCATGTGGTGGACACGCACAGT
TTTCCGCTGGAGATCACCAGGGTGCCGGAGATGCAGCGTTACGGAGCGTA
C

BO11681.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1787-PA 1869 Hexo2-RA 1..885 17..901 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
Hexo2-RA 2140 CG1787-RA 158..1042 17..901 4425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8710572..8711310 163..901 3695 100 Plus
X 23542271 X 8709809..8709958 17..166 750 100 Plus
Blast to na_te.dros performed 2015-02-12 20:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7964..8012 133..181 110 69.4 Plus
TART-C 11124 TART-C TARTC 11124bp 9408..9456 133..181 110 69.4 Plus

BO11681.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:32 Download gff for BO11681.5prime
Subject Subject Range Query Range Percent Splice Strand
Hexo2-PA 1..885 17..901 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:57 Download gff for BO11681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1787-PA 1..885 17..901 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:52:49 Download gff for BO11681.5prime
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 158..1042 17..901 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:30:12 Download gff for BO11681.5prime
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 158..1042 17..901 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:30:12 Download gff for BO11681.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8709809..8709957 17..165 100 -> Plus
X 8710575..8711310 166..901 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:52:49 Download gff for BO11681.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8603842..8603990 17..165 100 -> Plus
arm_X 8604608..8605343 166..901 100   Plus

BO11681.complete Sequence

1900 bp assembled on 2008-01-17

GenBank Submission: FJ632153

> BO11681.complete
GAAGTTATCAGTCGACATGCGGTTCAGCGGCTACAATCGTTATCAGTGCT
TTTGCTCTGCTGTTGGATCGCTGCTGCTATTATCCCTATTATCCTTCGCG
GTCGGCGCTGCGCTGACGCGGGCAGATGACGTCGGCAGCGACGCCGACGC
CGGCAGCGCCAGCAGGAAATGGCTGTGCAGCCGGACGGATATCTGCACCG
CGGAGGGCGAGATGGTGGCCGGACTGCAGTACGCGCCGGAGATCTTCGAG
AGCCAGCGGGATTGCCGACTGTCGTGCGGCAAGTACGGAGCCATCTGGCC
CATGCCCACCGGCAAGGAGTGCACCATATCGCACAGGCGGGTACGATTCG
ATCCGTGGAAGGTGCGTTTCCATGTTGTGGCGCCCGGCGAGGCGGCCACC
CAGTTTCTCAGGGAGACGAACCGGCTGTTCGTCTCGAATCTGCTGAAGGA
GTGCATACGAAACTGCACGCTGGAGACCAGCAAGCAGATTCTGGTCAGAT
CCACGGTGGCCAACGAGAGCCTCGTTCTGGACTGGCCCACCGACGAGAGC
TACGCCCTGGTGGTGCGAACCACTGAAACGGCCACCTTTGTGGACATCCA
AGCGACGACGGTGTACGGTGCACGTCATGCCTTCGAGACGCTGAGCAACC
TGGTCACCGGCAGCCTGTCCAATGGCCTGCTGATGGTCACCACGGCCAAC
ATCACCGATCGTCCGGCCTTTTCGCATCGCGGCGTCCTTCTGGATACGGC
CCGTAACTTTGTGCCGCTCAAGTTTATACGCAGCACCTTGGATGCGATGG
CGGCCAGTAAGCTGAATGTGCTCCACTGGCATGTGGTGGACACGCACAGT
TTTCCGCTGGAGATCACCAGGGTGCCGGAGATGCAGCGTTACGGAGCGTA
CTCCTCATCGCAGACGTACTCGCGCCAGGATGCACTGAATCTTGTGAAAT
ATGCCCGACTGCGGGGCATACGGATACTGATCGAGATCGATGGACCCTCG
CATGCGGGCAATGGCTGGCAATGGGGTCCTGCCGCCGGACTGGGCAACAT
GTCCGTGTGCCTGAATCAATCGCCCTGGAGGAGATTCTGTGTACAGCCAC
CGTGCGGCCAACTGAATCCCCTGAACGATCATATGTACGCAGTGCTCAAG
GAGATCTTCGAGGACGTAGCCGAGGTGGGCGCTCCCGAGGAGACCCTGCA
CATGGGCGGCGACGAGGTGTTCCTTCCCTGCTGGAATAACACCGACGAGA
TTCGGGATGGGATGCGGGCACGTGGCTACGATCTCAGCGAGCAGAGCTTC
CTGCGGCTGTGGTCACAATTCCATCAGCGGAACCTCAATGCATGGGACGA
GATTAACGAGCGTATGTATCCGGGCATCAAGGAGCCGAAGTCGGTGATCA
TCTGGTCCAGTCACCTCACCAATCCCCGGTACATCGAGACCTACCTGCCC
AAGGAGCGGTTCATAATCCAGACATGGGTGGAGTCACAGGATGCCCTCAA
TCGGGAGCTATTGCAGCGAGGCTACCGACTGATTGTGTCCACGAAGAATG
CCTGGTACCTGGATCACGGCTTCTGGGGCAGCACATCGTACTACAACTGG
CGCACCGTGTACTCCAGTGGCATGCCCGTTGGTCGCAGCAAGGATCAGGT
TCTCGGCGGTGAGGTGTGCATGTGGAGCGAGTATGTGGATCAGAACTCAC
TGGAATCCCGAATCTGGCCGCGAGCTGGAGCAGCAGCCGAGCGAATGTGG
TCAAATCCAAAGTCTTCAGCCCTGTTGGCCCAAAGAAGATTCTACCGCTA
CCGGGAGCGACTCCTGGCGCGCGGAATCCATGCGGATGCAGTTATTCCGC
ACTGGTGCGTCCTCCACGAAGGACAGTGCCTCGCAAGCTTTCTAGACCAT

BO11681.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
Hexo2-RA 1869 CG1787-PA 1..1866 17..1882 9315 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
Hexo2-RA 2140 CG1787-RA 158..2023 17..1882 9315 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8710572..8712112 163..1703 7690 99.9 Plus
X 23542271 X 8712182..8712361 1703..1882 900 100 Plus
X 23542271 X 8709809..8709958 17..166 750 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:20:48 has no hits.

BO11681.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:54 Download gff for BO11681.complete
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 1..1869 17..1886 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:22 Download gff for BO11681.complete
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 156..2021 17..1884 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:06 Download gff for BO11681.complete
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 158..2023 17..1884 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:54 Download gff for BO11681.complete
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 156..2024 17..1886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:22 Download gff for BO11681.complete
Subject Subject Range Query Range Percent Splice Strand
Hexo2-RA 158..2023 17..1884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:22 Download gff for BO11681.complete
Subject Subject Range Query Range Percent Splice Strand
X 8709809..8709957 17..165 100 -> Plus
X 8710575..8712112 166..1703 99 -> Plus
X 8712183..8712361 1704..1884 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:06 Download gff for BO11681.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8603842..8603990 17..165 100 -> Plus
arm_X 8604608..8606145 166..1703 99 -> Plus
arm_X 8606216..8606394 1704..1884 98   Plus

BO11681.pep Sequence

Translation from 16 to 1900

> BO11681.pep
MRFSGYNRYQCFCSAVGSLLLLSLLSFAVGAALTRADDVGSDADAGSASR
KWLCSRTDICTAEGEMVAGLQYAPEIFESQRDCRLSCGKYGAIWPMPTGK
ECTISHRRVRFDPWKVRFHVVAPGEAATQFLRETNRLFVSNLLKECIRNC
TLETSKQILVRSTVANESLVLDWPTDESYALVVRTTETATFVDIQATTVY
GARHAFETLSNLVTGSLSNGLLMVTTANITDRPAFSHRGVLLDTARNFVP
LKFIRSTLDAMAASKLNVLHWHVVDTHSFPLEITRVPEMQRYGAYSSSQT
YSRQDALNLVKYARLRGIRILIEIDGPSHAGNGWQWGPAAGLGNMSVCLN
QSPWRRFCVQPPCGQLNPLNDHMYAVLKEIFEDVAEVGAPEETLHMGGDE
VFLPCWNNTDEIRDGMRARGYDLSEQSFLRLWSQFHQRNLNAWDEINERM
YPGIKEPKSVIIWSSHLTNPRYIETYLPKERFIIQTWVESQDALNRELLQ
RGYRLIVSTKNAWYLDHGFWGSTSYYNWRTVYSSGMPVGRSKDQVLGGEV
CMWSEYVDQNSLESRIWPRAGAAAERMWSNPKSSALLAQRRFYRYRERLL
ARGIHADAVIPHWCVLHEGQCLASFLDH

BO11681.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
Hexo2-PA 622 CG1787-PA 1..622 1..622 3329 100 Plus
Hexo1-PF 606 CG1318-PF 6..597 14..621 972 35.7 Plus
Hexo1-PE 606 CG1318-PE 6..597 14..621 972 35.7 Plus
Hexo1-PD 606 CG1318-PD 6..597 14..621 972 35.7 Plus
Hexo1-PA 622 CG1318-PA 6..597 14..621 972 35.7 Plus