Clone BO11682 Report

Search the DGRC for BO11682

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptMlc1-RB
Protein status:BO11682.pep: validated full length
Sequenced Size:499

Clone Sequence Records

BO11682.5prime Sequence

497 bp (496 high quality bases) assembled on 2006-04-19

> BO11682.5prime
GAAGTTATCAGTCGACATGGCTGATGTTCCAAAGCGTGAAGTTGAAAATG
TCGAATTCGTTTTCGAAGTCATGGGCTCCCCCGGTGAGGGCATTGATGCC
GTCGACCTAGGTGATGCCCTCCGCGCTCTGAACTTGAACCCCACATTGGC
GCTGATCGAGAAATTGGGCGGCACCAAGAAGCGCAACGAGAAGAAGATCA
AGCTGGATGAGTTCCTGCCCATCTACTCACAGGTCAAGAAGGAGAAGGAG
CAGGGCTGCTACGAGGACTTCATTGAGTGCTTGAAGCTCTACGACAAGGA
GGAGAACGGCACCATGCTGCTGGCTGAGCTGCAGCACGCCCTGCTGGCGC
TTGGTGAGAGCTTGGATGACGAGCAGGTGGAGACCCTGTTCGCTGACTGC
ATGGATCCCGAGGATGATGAAGGATTTATCCCCTACTCTCAGTTCGTCCA
GCGCCTGATGAGCGATCCTGTCGTCTTCGACGCAAGCTTTCTAGACC

BO11682.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5596-PB 468 Mlc1-RB 1..465 17..481 2300 99.7 Plus
CG5596-PA 468 Mlc1-RA 1..424 17..440 2095 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc1-RD 1414 CG5596-RD 66..530 17..481 2310 99.8 Plus
Mlc1-RB 929 CG5596-RB 66..530 17..481 2310 99.8 Plus
Mlc1-RA 882 CG5596-RA 66..489 17..440 2105 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27658611..27658921 358..48 1540 99.7 Minus
3R 32079331 3R 27658469..27658556 440..353 440 100 Minus
3R 32079331 3R 27658073..27658113 481..441 205 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:44:39 has no hits.

BO11682.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:34 Download gff for BO11682.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlc1-PB 1..468 17..485 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:01 Download gff for BO11682.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5596-PB 1..468 17..485 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:13:15 Download gff for BO11682.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlc1-RB 58..533 9..485 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:08:15 Download gff for BO11682.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlc1-RB 58..533 9..485 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:08:15 Download gff for BO11682.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27658069..27658113 441..485 95 <- Minus
3R 27658469..27658555 354..440 100 <- Minus
3R 27658616..27658921 48..353 99 <- Minus
3R 27659929..27659967 8..47 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:13:15 Download gff for BO11682.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23483791..23483835 441..485 95 <- Minus
arm_3R 23484191..23484277 354..440 100 <- Minus
arm_3R 23484338..23484643 48..353 99 <- Minus
arm_3R 23485651..23485689 8..47 92   Minus

BO11682.3prime Sequence

497 bp (496 high quality bases) assembled on 2006-04-19

> BO11682.3prime
ATGGTCTAGAAAGCTTGCGTCGAAGACGACAGGATCGCTCATCAGGCGCT
GGACGAACTGAGAGTAGGGGATAAATCCTTCATCATCCTCGGGATCCATG
CAGTCAGCGAACAGGGTCTCCACCTGCTCGTCATCCAAGCTCTCACCAAG
CGCCAGCAGGGCGTGCTGCAGCTCAGCCAGCAGCATGGTGCCGTTCTCCT
CCTTGTCGTAGAGCTTCAAGCACTCAATGAAGTCCTCGTAGCAGCCCTGC
TCCTTCTCCTTCTTGACCTGTGAGTAGATGGGCAGGAACTCATCCAGCTT
GATCTTCTTCTCGTTGCGCTTCTTGGTGCCGCCCAATTTCTCGATCAGCG
CCAATGTGGGGTTCAAGTTCAGAGCGCGGAGGGCATCACCTAGGTCGACG
GCATCAATGCCCTCACCGGGGGAGCCCATGACTTCGAAAACGAATTCGAC
ATTTTCAACTTCACGCTTTGGAACATCAGCCATGTCGACTGATAACT

BO11682.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5596-PB 468 Mlc1-RB 1..465 483..19 2300 99.7 Minus
CG5596-PA 468 Mlc1-RA 1..424 483..60 2095 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc1-RD 1414 CG5596-RD 66..530 483..19 2310 99.8 Minus
Mlc1-RB 929 CG5596-RB 66..530 483..19 2310 99.8 Minus
Mlc1-RA 882 CG5596-RA 66..489 483..60 2105 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27658611..27658921 142..452 1540 99.7 Plus
3R 32079331 3R 27658469..27658556 60..147 440 100 Plus
3R 32079331 3R 27658073..27658113 19..59 205 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:26:18 has no hits.

BO11682.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:33 Download gff for BO11682.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlc1-PB 1..468 15..483 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:59 Download gff for BO11682.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5596-PB 1..468 15..483 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:28:28 Download gff for BO11682.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlc1-RB 58..533 15..491 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:51:57 Download gff for BO11682.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlc1-RB 58..533 15..491 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:51:57 Download gff for BO11682.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27658069..27658113 15..59 95 <- Plus
3R 27658469..27658555 60..146 100 <- Plus
3R 27658616..27658921 147..452 99 <- Plus
3R 27659929..27659967 453..492 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:28:28 Download gff for BO11682.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23483791..23483835 15..59 95 <- Plus
arm_3R 23484191..23484277 60..146 100 <- Plus
arm_3R 23484338..23484643 147..452 99 <- Plus
arm_3R 23485651..23485689 453..492 92   Plus

BO11682.complete Sequence

499 bp assembled on 2006-10-11

GenBank Submission: FJ632154

> BO11682.complete
GAAGTTATCAGTCGACATGGCTGATGTTCCAAAGCGTGAAGTTGAAAATG
TCGAATTCGTTTTCGAAGTCATGGGCTCCCCCGGTGAGGGCATTGATGCC
GTCGACCTAGGTGATGCCCTCCGCGCTCTGAACTTGAACCCCACATTGGC
GCTGATCGAGAAATTGGGCGGCACCAAGAAGCGCAACGAGAAGAAGATCA
AGCTGGATGAGTTCCTGCCCATCTACTCACAGGTCAAGAAGGAGAAGGAG
CAGGGCTGCTACGAGGACTTCATTGAGTGCTTGAAGCTCTACGACAAGGA
GGAGAACGGCACCATGCTGCTGGCTGAGCTGCAGCACGCCCTGCTGGCGC
TTGGTGAGAGCTTGGATGACGAGCAGGTGGAGACCCTGTTCGCTGACTGC
ATGGATCCCGAGGATGATGAAGGATTTATCCCCTACTCTCAGTTCGTCCA
GCGCCTGATGAGCGATCCTGTCGTCTTCGACGCAAGCTTTCTAGACCAT

BO11682.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc1-RD 468 CG5596-PD 1..465 17..481 2310 99.8 Plus
Mlc1-RB 468 CG5596-PB 1..465 17..481 2310 99.8 Plus
Mlc1-RA 468 CG5596-PA 1..424 17..440 2105 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc1-RD 1414 CG5596-RD 66..530 17..481 2310 99.8 Plus
Mlc1-RB 929 CG5596-RB 66..530 17..481 2310 99.8 Plus
Mlc1-RA 882 CG5596-RA 66..489 17..440 2105 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27658611..27658921 358..48 1540 99.7 Minus
3R 32079331 3R 27658469..27658556 440..353 440 100 Minus
3R 32079331 3R 27658073..27658113 481..441 205 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:40:06 has no hits.

BO11682.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:29 Download gff for BO11682.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc1-RB 1..468 17..485 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:42 Download gff for BO11682.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc1-RB 80..555 9..485 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:45 Download gff for BO11682.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc1-RB 66..530 17..483 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:29 Download gff for BO11682.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc1-RB 80..555 9..485 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:47 Download gff for BO11682.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc1-RB 66..530 17..483 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:47 Download gff for BO11682.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27658616..27658921 48..353 99 <- Minus
3R 27659929..27659958 17..47 96   Minus
3R 27658071..27658113 441..483 95 <- Minus
3R 27658469..27658555 354..440 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:45 Download gff for BO11682.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23483793..23483835 441..483 95 <- Minus
arm_3R 23484191..23484277 354..440 100 <- Minus
arm_3R 23484338..23484643 48..353 99 <- Minus
arm_3R 23485651..23485680 17..47 96   Minus

BO11682.pep Sequence

Translation from 16 to 499

> BO11682.pep
MADVPKREVENVEFVFEVMGSPGEGIDAVDLGDALRALNLNPTLALIEKL
GGTKKRNEKKIKLDEFLPIYSQVKKEKEQGCYEDFIECLKLYDKEENGTM
LLAELQHALLALGESLDDEQVETLFADCMDPEDDEGFIPYSQFVQRLMSD
PVVFDASFLDH

BO11682.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc1-PD 155 CG5596-PD 1..155 1..155 799 100 Plus
Mlc1-PB 155 CG5596-PB 1..155 1..155 799 100 Plus
Mlc1-PA 155 CG5596-PA 1..151 1..151 744 95.4 Plus
Mlc-c-PA 147 CG3201-PA 1..146 1..149 226 37.3 Plus
Mlc-c-PB 153 CG3201-PB 15..152 9..149 226 38.7 Plus