Clone Sequence Records
BO11682.5prime Sequence
497 bp (496 high quality bases) assembled on 2006-04-19
> BO11682.5prime
GAAGTTATCAGTCGACATGGCTGATGTTCCAAAGCGTGAAGTTGAAAATG
TCGAATTCGTTTTCGAAGTCATGGGCTCCCCCGGTGAGGGCATTGATGCC
GTCGACCTAGGTGATGCCCTCCGCGCTCTGAACTTGAACCCCACATTGGC
GCTGATCGAGAAATTGGGCGGCACCAAGAAGCGCAACGAGAAGAAGATCA
AGCTGGATGAGTTCCTGCCCATCTACTCACAGGTCAAGAAGGAGAAGGAG
CAGGGCTGCTACGAGGACTTCATTGAGTGCTTGAAGCTCTACGACAAGGA
GGAGAACGGCACCATGCTGCTGGCTGAGCTGCAGCACGCCCTGCTGGCGC
TTGGTGAGAGCTTGGATGACGAGCAGGTGGAGACCCTGTTCGCTGACTGC
ATGGATCCCGAGGATGATGAAGGATTTATCCCCTACTCTCAGTTCGTCCA
GCGCCTGATGAGCGATCCTGTCGTCTTCGACGCAAGCTTTCTAGACC
BO11682.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5596-PB | 468 | Mlc1-RB | 1..465 | 17..481 | 2300 | 99.7 | Plus |
CG5596-PA | 468 | Mlc1-RA | 1..424 | 17..440 | 2095 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlc1-RD | 1414 | CG5596-RD | 66..530 | 17..481 | 2310 | 99.8 | Plus |
Mlc1-RB | 929 | CG5596-RB | 66..530 | 17..481 | 2310 | 99.8 | Plus |
Mlc1-RA | 882 | CG5596-RA | 66..489 | 17..440 | 2105 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27658611..27658921 | 358..48 | 1540 | 99.7 | Minus |
3R | 32079331 | 3R | 27658469..27658556 | 440..353 | 440 | 100 | Minus |
3R | 32079331 | 3R | 27658073..27658113 | 481..441 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:44:39 has no hits.
BO11682.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:34 Download gff for
BO11682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-PB | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:01 Download gff for
BO11682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5596-PB | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:13:15 Download gff for
BO11682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-RB | 58..533 | 9..485 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:08:15 Download gff for
BO11682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-RB | 58..533 | 9..485 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:08:15 Download gff for
BO11682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27658069..27658113 | 441..485 | 95 | <- | Minus |
3R | 27658469..27658555 | 354..440 | 100 | <- | Minus |
3R | 27658616..27658921 | 48..353 | 99 | <- | Minus |
3R | 27659929..27659967 | 8..47 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:13:15 Download gff for
BO11682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23483791..23483835 | 441..485 | 95 | <- | Minus |
arm_3R | 23484191..23484277 | 354..440 | 100 | <- | Minus |
arm_3R | 23484338..23484643 | 48..353 | 99 | <- | Minus |
arm_3R | 23485651..23485689 | 8..47 | 92 | | Minus |
BO11682.3prime Sequence
497 bp (496 high quality bases) assembled on 2006-04-19
> BO11682.3prime
ATGGTCTAGAAAGCTTGCGTCGAAGACGACAGGATCGCTCATCAGGCGCT
GGACGAACTGAGAGTAGGGGATAAATCCTTCATCATCCTCGGGATCCATG
CAGTCAGCGAACAGGGTCTCCACCTGCTCGTCATCCAAGCTCTCACCAAG
CGCCAGCAGGGCGTGCTGCAGCTCAGCCAGCAGCATGGTGCCGTTCTCCT
CCTTGTCGTAGAGCTTCAAGCACTCAATGAAGTCCTCGTAGCAGCCCTGC
TCCTTCTCCTTCTTGACCTGTGAGTAGATGGGCAGGAACTCATCCAGCTT
GATCTTCTTCTCGTTGCGCTTCTTGGTGCCGCCCAATTTCTCGATCAGCG
CCAATGTGGGGTTCAAGTTCAGAGCGCGGAGGGCATCACCTAGGTCGACG
GCATCAATGCCCTCACCGGGGGAGCCCATGACTTCGAAAACGAATTCGAC
ATTTTCAACTTCACGCTTTGGAACATCAGCCATGTCGACTGATAACT
BO11682.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5596-PB | 468 | Mlc1-RB | 1..465 | 483..19 | 2300 | 99.7 | Minus |
CG5596-PA | 468 | Mlc1-RA | 1..424 | 483..60 | 2095 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlc1-RD | 1414 | CG5596-RD | 66..530 | 483..19 | 2310 | 99.8 | Minus |
Mlc1-RB | 929 | CG5596-RB | 66..530 | 483..19 | 2310 | 99.8 | Minus |
Mlc1-RA | 882 | CG5596-RA | 66..489 | 483..60 | 2105 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27658611..27658921 | 142..452 | 1540 | 99.7 | Plus |
3R | 32079331 | 3R | 27658469..27658556 | 60..147 | 440 | 100 | Plus |
3R | 32079331 | 3R | 27658073..27658113 | 19..59 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:26:18 has no hits.
BO11682.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:33 Download gff for
BO11682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-PB | 1..468 | 15..483 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:39:59 Download gff for
BO11682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5596-PB | 1..468 | 15..483 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:28:28 Download gff for
BO11682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-RB | 58..533 | 15..491 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:51:57 Download gff for
BO11682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-RB | 58..533 | 15..491 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:51:57 Download gff for
BO11682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27658069..27658113 | 15..59 | 95 | <- | Plus |
3R | 27658469..27658555 | 60..146 | 100 | <- | Plus |
3R | 27658616..27658921 | 147..452 | 99 | <- | Plus |
3R | 27659929..27659967 | 453..492 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:28:28 Download gff for
BO11682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23483791..23483835 | 15..59 | 95 | <- | Plus |
arm_3R | 23484191..23484277 | 60..146 | 100 | <- | Plus |
arm_3R | 23484338..23484643 | 147..452 | 99 | <- | Plus |
arm_3R | 23485651..23485689 | 453..492 | 92 | | Plus |
BO11682.complete Sequence
499 bp assembled on 2006-10-11
GenBank Submission: FJ632154
> BO11682.complete
GAAGTTATCAGTCGACATGGCTGATGTTCCAAAGCGTGAAGTTGAAAATG
TCGAATTCGTTTTCGAAGTCATGGGCTCCCCCGGTGAGGGCATTGATGCC
GTCGACCTAGGTGATGCCCTCCGCGCTCTGAACTTGAACCCCACATTGGC
GCTGATCGAGAAATTGGGCGGCACCAAGAAGCGCAACGAGAAGAAGATCA
AGCTGGATGAGTTCCTGCCCATCTACTCACAGGTCAAGAAGGAGAAGGAG
CAGGGCTGCTACGAGGACTTCATTGAGTGCTTGAAGCTCTACGACAAGGA
GGAGAACGGCACCATGCTGCTGGCTGAGCTGCAGCACGCCCTGCTGGCGC
TTGGTGAGAGCTTGGATGACGAGCAGGTGGAGACCCTGTTCGCTGACTGC
ATGGATCCCGAGGATGATGAAGGATTTATCCCCTACTCTCAGTTCGTCCA
GCGCCTGATGAGCGATCCTGTCGTCTTCGACGCAAGCTTTCTAGACCAT
BO11682.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlc1-RD | 468 | CG5596-PD | 1..465 | 17..481 | 2310 | 99.8 | Plus |
Mlc1-RB | 468 | CG5596-PB | 1..465 | 17..481 | 2310 | 99.8 | Plus |
Mlc1-RA | 468 | CG5596-PA | 1..424 | 17..440 | 2105 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlc1-RD | 1414 | CG5596-RD | 66..530 | 17..481 | 2310 | 99.8 | Plus |
Mlc1-RB | 929 | CG5596-RB | 66..530 | 17..481 | 2310 | 99.8 | Plus |
Mlc1-RA | 882 | CG5596-RA | 66..489 | 17..440 | 2105 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27658611..27658921 | 358..48 | 1540 | 99.7 | Minus |
3R | 32079331 | 3R | 27658469..27658556 | 440..353 | 440 | 100 | Minus |
3R | 32079331 | 3R | 27658073..27658113 | 481..441 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:40:06 has no hits.
BO11682.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:29 Download gff for
BO11682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-RB | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:42 Download gff for
BO11682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-RB | 80..555 | 9..485 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:45 Download gff for
BO11682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-RB | 66..530 | 17..483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:29 Download gff for
BO11682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-RB | 80..555 | 9..485 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:47 Download gff for
BO11682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc1-RB | 66..530 | 17..483 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:47 Download gff for
BO11682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27658616..27658921 | 48..353 | 99 | <- | Minus |
3R | 27659929..27659958 | 17..47 | 96 | | Minus |
3R | 27658071..27658113 | 441..483 | 95 | <- | Minus |
3R | 27658469..27658555 | 354..440 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:45 Download gff for
BO11682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23483793..23483835 | 441..483 | 95 | <- | Minus |
arm_3R | 23484191..23484277 | 354..440 | 100 | <- | Minus |
arm_3R | 23484338..23484643 | 48..353 | 99 | <- | Minus |
arm_3R | 23485651..23485680 | 17..47 | 96 | | Minus |
BO11682.pep Sequence
Translation from 16 to 499
> BO11682.pep
MADVPKREVENVEFVFEVMGSPGEGIDAVDLGDALRALNLNPTLALIEKL
GGTKKRNEKKIKLDEFLPIYSQVKKEKEQGCYEDFIECLKLYDKEENGTM
LLAELQHALLALGESLDDEQVETLFADCMDPEDDEGFIPYSQFVQRLMSD
PVVFDASFLDH
BO11682.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlc1-PD | 155 | CG5596-PD | 1..155 | 1..155 | 799 | 100 | Plus |
Mlc1-PB | 155 | CG5596-PB | 1..155 | 1..155 | 799 | 100 | Plus |
Mlc1-PA | 155 | CG5596-PA | 1..151 | 1..151 | 744 | 95.4 | Plus |
Mlc-c-PA | 147 | CG3201-PA | 1..146 | 1..149 | 226 | 37.3 | Plus |
Mlc-c-PB | 153 | CG3201-PB | 15..152 | 9..149 | 226 | 38.7 | Plus |