Clone Sequence Records
BO11683.5prime Sequence
560 bp (559 high quality bases) assembled on 2006-04-19
> BO11683.5prime
GAAGTTATCAGTCGACATGCTGTCCCTAAGCGATCCCAACAATGCTGGTG
GCATTCCCGACAAGGCGTGGCAGCCGCACTTCGTGACCCTGGAAACGAGC
ATGGGAGAAATCACCGTGGAGCTGTACTGGAAACACGCGCCCAACACCTG
CCGCAACTTTGCCGAACTCTCGAGAAGGGGCTACTACAACAACGTGGTGT
TCCACCGGATCATCAGGGACTTCATGATCCAGGGCGGCGATCCCACGGGC
ACTGGCCGCGGAGGCGCCTCCATCTACGGATCGGAGTTCGCGGACGAGCT
GCACGGCGACTTGAGGCACACGGGCGCGGGCATCCTCTCGATGGCCAACT
CTGGACCGGACACCAACGGGTCCCAGTTCTTCATCACGCTGGCGCCCACG
CAGTGGCTGGATGGCAAGCACACGATCTTCGGCAGGGTCTACACGGGCAT
GGAGGTGGTCAAGCGGATCGGCATGGTGGAAACCGACAAGAACGATCGCC
CCGTGGATCCCCTAAGGATCATCAAGGCCAAGGTGGAGAAGCTGGCAAGC
TTTCTAGACC
BO11683.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13892-PA | 531 | Cypl-RA | 1..528 | 17..544 | 2640 | 100 | Plus |
| CG2852-PA | 618 | CG2852-RA | 231..269 | 199..237 | 145 | 94.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cypl-RA | 718 | CG13892-RA | 80..607 | 17..544 | 2640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 542233..542679 | 544..98 | 2235 | 100 | Minus |
| 3L | 28110227 | 3L | 542770..542852 | 99..17 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:44:50 has no hits.
BO11683.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:36 Download gff for
BO11683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-PA | 1..531 | 17..547 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:04 Download gff for
BO11683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13892-PA | 1..531 | 17..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:13:18 Download gff for
BO11683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-RA | 80..612 | 17..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:08:53 Download gff for
BO11683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-RA | 80..612 | 17..550 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:08:53 Download gff for
BO11683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 542228..542677 | 100..550 | 99 | <- | Minus |
| 3L | 542770..542852 | 17..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:13:18 Download gff for
BO11683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 542228..542677 | 100..550 | 99 | <- | Minus |
| arm_3L | 542770..542852 | 17..99 | 100 | | Minus |
BO11683.3prime Sequence
560 bp (559 high quality bases) assembled on 2006-04-19
> BO11683.3prime
ATGGTCTAGAAAGCTTGCCAGCTTCTCCACCTTGGCCTTGATGATCCTTA
GGGGATCCACGGGGCGATCGTTCTTGTCGGTTTCCACCATGCCGATCCGC
TTGACCACCTCCATGCCCGTGTAGACCCTGCCGAAGATCGTGTGCTTGCC
ATCCAGCCACTGCGTGGGCGCCAGCGTGATGAAGAACTGGGACCCGTTGG
TGTCCGGTCCAGAGTTGGCCATCGAGAGGATGCCCGCGCCCGTGTGCCTC
AAGTCGCCGTGCAGCTCGTCCGCGAACTCCGATCCGTAGATGGAGGCGCC
TCCGCGGCCAGTGCCCGTGGGATCGCCGCCCTGGATCATGAAGTCCCTGA
TGATCCGGTGGAACACCACGTTGTTGTAGTAGCCCCTTCTCGAGAGTTCG
GCAAAGTTGCGGCAGGTGTTGGGCGCGTGTTTCCAGTACAGCTCCACGGT
GATTTCTCCCATGCTCGTTTCCAGGGTCACGAAGTGCGGCTGCCACGCCT
TGTCGGGAATGCCACCAGCATTGTTGGGATCGCTTAGGGACAGCATGTCG
ACTGATAACT
BO11683.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13892-PA | 531 | Cypl-RA | 1..528 | 546..19 | 2640 | 100 | Minus |
| CG2852-PA | 618 | CG2852-RA | 231..269 | 364..326 | 145 | 94.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cypl-RA | 718 | CG13892-RA | 80..607 | 546..19 | 2640 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 542233..542679 | 19..465 | 2235 | 100 | Plus |
| 3L | 28110227 | 3L | 542770..542852 | 464..546 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:52:18 has no hits.
BO11683.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:35 Download gff for
BO11683.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-PA | 1..531 | 16..546 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:02 Download gff for
BO11683.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13892-PA | 1..531 | 16..546 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:50:27 Download gff for
BO11683.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-RA | 80..612 | 13..546 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:20:09 Download gff for
BO11683.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-RA | 80..612 | 13..546 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:20:09 Download gff for
BO11683.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 542228..542677 | 13..463 | 99 | <- | Plus |
| 3L | 542770..542852 | 464..546 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:50:27 Download gff for
BO11683.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 542228..542677 | 13..463 | 99 | <- | Plus |
| arm_3L | 542770..542852 | 464..546 | 100 | | Plus |
BO11683.complete Sequence
562 bp assembled on 2007-06-22
GenBank Submission: FJ632155
> BO11683.complete
GAAGTTATCAGTCGACATGCTGTCCCTAAGCGATCCCAACAATGCTGGTG
GCATTCCCGACAAGGCGTGGCAGCCGCACTTCGTGACCCTGGAAACGAGC
ATGGGAGAAATCACCGTGGAGCTGTACTGGAAACACGCGCCCAACACCTG
CCGCAACTTTGCCGAACTCTCGAGAAGGGGCTACTACAACAACGTGGTGT
TCCACCGGATCATCAGGGACTTCATGATCCAGGGCGGCGATCCCACGGGC
ACTGGCCGCGGAGGCGCCTCCATCTACGGATCGGAGTTCGCGGACGAGCT
GCACGGCGACTTGAGGCACACGGGCGCGGGCATCCTCTCGATGGCCAACT
CTGGACCGGACACCAACGGGTCCCAGTTCTTCATCACGCTGGCGCCCACG
CAGTGGCTGGATGGCAAGCACACGATCTTCGGCAGGGTCTACACGGGCAT
GGAGGTGGTCAAGCGGATCGGCATGGTGGAAACCGACAAGAACGATCGCC
CCGTGGATCCCCTAAGGATCATCAAGGCCAAGGTGGAGAAGCTGGCAAGC
TTTCTAGACCAT
BO11683.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cypl-RA | 531 | CG13892-PA | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cypl-RA | 718 | CG13892-RA | 80..607 | 17..544 | 2640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 542233..542679 | 544..98 | 2235 | 100 | Minus |
| 3L | 28110227 | 3L | 542770..542852 | 99..17 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:08:36 has no hits.
BO11683.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:41 Download gff for
BO11683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-RA | 1..531 | 17..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:27 Download gff for
BO11683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-RA | 65..597 | 17..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:46:12 Download gff for
BO11683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-RA | 80..607 | 17..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:41 Download gff for
BO11683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-RA | 65..597 | 17..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:24 Download gff for
BO11683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cypl-RA | 80..607 | 17..546 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:24 Download gff for
BO11683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 542230..542677 | 100..546 | 99 | <- | Minus |
| 3L | 542770..542852 | 17..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:46:12 Download gff for
BO11683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 542230..542677 | 100..546 | 99 | <- | Minus |
| arm_3L | 542770..542852 | 17..99 | 100 | | Minus |
BO11683.pep Sequence
Translation from 16 to 562
> BO11683.pep
MLSLSDPNNAGGIPDKAWQPHFVTLETSMGEITVELYWKHAPNTCRNFAE
LSRRGYYNNVVFHRIIRDFMIQGGDPTGTGRGGASIYGSEFADELHGDLR
HTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHTIFGRVYTGMEVVKR
IGMVETDKNDRPVDPLRIIKAKVEKLASFLDH
BO11683.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cypl-PA | 176 | CG13892-PA | 1..176 | 1..176 | 943 | 100 | Plus |
| CG7747-PA | 517 | CG7747-PA | 281..432 | 22..173 | 435 | 50.7 | Plus |
| CG3511-PB | 637 | CG3511-PB | 484..631 | 23..169 | 425 | 54.1 | Plus |
| CG3511-PA | 637 | CG3511-PA | 484..631 | 23..169 | 425 | 54.1 | Plus |
| CG10907-PA | 502 | CG10907-PA | 15..166 | 23..173 | 379 | 46.4 | Plus |
