Clone BO11684 Report

Search the DGRC for BO11684

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG9757-RA
Protein status:BO11684.pep: validated full length
Sequenced Size:415

Clone Sequence Records

BO11684.3prime Sequence

413 bp (412 high quality bases) assembled on 2006-04-19

> BO11684.3prime
ATGGTCTAGAAAGCTTGCGCCTCCAAATCCGCCACCGAAGCCACCGCCTG
GTCCTCCGAAGCCGCCTCCCGGACCGCCAAAGCCGCCACCTGGACGTCCA
CCAAAGCCACCGCCTCCGAAGCCGCCTTGACCTCCGAATCCGCCGCCTTG
ACCTCCGAATCCACCGCCTGGACCTCCGAATCCGCCGCCTTGACCTCCGA
ATCCGCCGCCTGGACCTCCGAAACCGCCTCCCGGACCGCCAAAGCCGCCG
CCAAACTGACGTGCTTGGCGTGCTGCCACCGGAGCCTGGACACCTGCATC
CACATCCAGAAGTTGCGCCGCCACAGGATCATATGTGGCTGCTGATGAGC
CGGCGACCAGGAGAATGGTCGCCAGGGCAAGGCAAACAAATGTGCGCATG
TCGACTGATAACT

BO11684.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9757-PA 384 CG9757-RA 1..381 399..19 1905 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9757-RB 851 CG9757-RB 57..437 399..19 1905 100 Minus
CG9757-RA 568 CG9757-RA 57..437 399..19 1905 100 Minus
CG9757-RB 851 CG9757-RB 204..292 210..122 310 89.9 Minus
CG9757-RB 851 CG9757-RB 246..334 252..164 310 89.9 Minus
CG9757-RA 568 CG9757-RA 204..292 210..122 310 89.9 Minus
CG9757-RA 568 CG9757-RA 246..334 252..164 310 89.9 Minus
CG9757-RB 851 CG9757-RB 204..272 189..121 225 88.4 Minus
CG9757-RB 851 CG9757-RB 267..335 252..184 225 88.4 Minus
CG9757-RA 568 CG9757-RA 204..272 189..121 225 88.4 Minus
CG9757-RA 568 CG9757-RA 267..335 252..184 225 88.4 Minus
CG9757-RB 851 CG9757-RB 369..421 249..197 205 92.5 Minus
CG9757-RB 851 CG9757-RB 207..259 87..35 205 92.5 Minus
CG9757-RA 568 CG9757-RA 207..259 87..35 205 92.5 Minus
CG9757-RA 568 CG9757-RA 369..421 249..197 205 92.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13611997..13612377 19..399 1905 100 Plus
3R 32079331 3R 13612100..13612188 164..252 310 89.9 Plus
3R 32079331 3R 13612142..13612230 122..210 310 89.9 Plus
3R 32079331 3R 13612099..13612167 184..252 225 88.4 Plus
3R 32079331 3R 13612162..13612230 121..189 225 88.4 Plus
3R 32079331 3R 13612175..13612227 35..87 205 92.5 Plus
3R 32079331 3R 13612013..13612065 197..249 205 92.5 Plus
Blast to na_te.dros performed on 2015-02-12 23:39:51 has no hits.

BO11684.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:37 Download gff for BO11684.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9757-PA 1..384 18..399 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:05 Download gff for BO11684.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9757-PA 1..384 18..399 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 16:55:42 Download gff for BO11684.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9757-RA 48..437 19..408 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:20:20 Download gff for BO11684.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9757-RA 48..437 19..408 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:20:20 Download gff for BO11684.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13611997..13612386 19..408 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 16:55:42 Download gff for BO11684.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9437719..9438108 19..408 98   Plus

BO11684.5prime Sequence

413 bp (412 high quality bases) assembled on 2006-04-19

> BO11684.5prime
GAAGTTATCAGTCGACATGCGCACATTTGTTTGCCTTGCCCTGGCGACCA
TTCTCCTGGTCGCCGGCTCATCAGCAGCCACATATGATCCTGTGGCGGCG
CAACTTCTGGATGTGGATGCAGGTGTCCAGGCTCCGGTGGCAGCACGCCA
AGCACGTCAGTTTGGCGGCGGCTTTGGCGGTCCGGGAGGCGGTTTCGGAG
GTCCAGGCGGCGGATTCGGAGGTCAAGGCGGCGGATTCGGAGGTCCAGGC
GGTGGATTCGGAGGTCAAGGCGGCGGATTCGGAGGTCAAGGCGGCTTCGG
AGGCGGTGGCTTTGGTGGACGTCCAGGTGGCGGCTTTGGCGGTCCGGGAG
GCGGCTTCGGAGGACCAGGCGGTGGCTTCGGTGGCGGATTTGGAGGCGCA
AGCTTTCTAGACC

BO11684.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9757-PA 384 CG9757-RA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9757-RB 851 CG9757-RB 57..437 17..397 1905 100 Plus
CG9757-RA 568 CG9757-RA 57..437 17..397 1905 100 Plus
CG9757-RB 851 CG9757-RB 204..292 206..294 310 89.9 Plus
CG9757-RB 851 CG9757-RB 246..334 164..252 310 89.9 Plus
CG9757-RA 568 CG9757-RA 204..292 206..294 310 89.9 Plus
CG9757-RA 568 CG9757-RA 246..334 164..252 310 89.9 Plus
CG9757-RB 851 CG9757-RB 204..272 227..295 225 88.4 Plus
CG9757-RB 851 CG9757-RB 267..335 164..232 225 88.4 Plus
CG9757-RA 568 CG9757-RA 204..272 227..295 225 88.4 Plus
CG9757-RA 568 CG9757-RA 267..335 164..232 225 88.4 Plus
CG9757-RB 851 CG9757-RB 207..259 329..381 205 92.5 Plus
CG9757-RB 851 CG9757-RB 369..421 167..219 205 92.5 Plus
CG9757-RA 568 CG9757-RA 207..259 329..381 205 92.5 Plus
CG9757-RA 568 CG9757-RA 369..421 167..219 205 92.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13611997..13612377 397..17 1905 100 Minus
3R 32079331 3R 13612100..13612188 252..164 310 89.9 Minus
3R 32079331 3R 13612142..13612230 294..206 310 89.9 Minus
3R 32079331 3R 13612099..13612167 232..164 225 88.4 Minus
3R 32079331 3R 13612162..13612230 295..227 225 88.4 Minus
3R 32079331 3R 13612175..13612227 381..329 205 92.5 Minus
3R 32079331 3R 13612013..13612065 219..167 205 92.5 Minus
Blast to na_te.dros performed on 2015-02-12 13:17:58 has no hits.

BO11684.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:38 Download gff for BO11684.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9757-PA 1..384 17..398 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:06 Download gff for BO11684.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9757-PA 1..384 17..398 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:25:47 Download gff for BO11684.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9757-RA 48..437 8..397 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:49:04 Download gff for BO11684.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9757-RA 48..437 8..397 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:49:04 Download gff for BO11684.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13611997..13612386 8..397 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:25:47 Download gff for BO11684.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9437719..9438108 8..397 98   Minus

BO11684.complete Sequence

415 bp assembled on 2006-10-11

GenBank Submission: FJ632156

> BO11684.complete
GAAGTTATCAGTCGACATGCGCACATTTGTTTGCCTTGCCCTGGCGACCA
TTCTCCTGGTCGCCGGCTCATCAGCAGCCACATATGATCCTGTGGCGGCG
CAACTTCTGGATGTGGATGCAGGTGTCCAGGCTCCGGTGGCAGCACGCCA
AGCACGTCAGTTTGGCGGCGGCTTTGGCGGTCCGGGAGGCGGTTTCGGAG
GTCCAGGCGGCGGATTCGGAGGTCAAGGCGGCGGATTCGGAGGTCCAGGC
GGTGGATTCGGAGGTCAAGGCGGCGGATTCGGAGGTCAAGGCGGCTTCGG
AGGCGGTGGCTTTGGTGGACGTCCAGGTGGCGGCTTTGGCGGTCCGGGAG
GCGGCTTCGGAGGACCAGGCGGTGGCTTCGGTGGCGGATTTGGAGGCGCA
AGCTTTCTAGACCAT

BO11684.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9757-RB 384 CG9757-PB 1..381 17..397 1905 100 Plus
CG9757-RA 384 CG9757-PA 1..381 17..397 1905 100 Plus
CG9757-RB 384 CG9757-PB 148..236 206..294 310 89.9 Plus
CG9757-RB 384 CG9757-PB 190..278 164..252 310 89.9 Plus
CG9757-RA 384 CG9757-PA 148..236 206..294 310 89.9 Plus
CG9757-RA 384 CG9757-PA 190..278 164..252 310 89.9 Plus
CG9757-RB 384 CG9757-PB 148..216 227..295 225 88.4 Plus
CG9757-RB 384 CG9757-PB 211..279 164..232 225 88.4 Plus
CG9757-RA 384 CG9757-PA 148..216 227..295 225 88.4 Plus
CG9757-RA 384 CG9757-PA 211..279 164..232 225 88.4 Plus
CG9757-RB 384 CG9757-PB 151..203 329..381 205 92.5 Plus
CG9757-RB 384 CG9757-PB 313..365 167..219 205 92.5 Plus
CG9757-RA 384 CG9757-PA 151..203 329..381 205 92.5 Plus
CG9757-RA 384 CG9757-PA 313..365 167..219 205 92.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9757-RB 851 CG9757-RB 57..437 17..397 1905 100 Plus
CG9757-RA 568 CG9757-RA 57..437 17..397 1905 100 Plus
CG9757-RB 851 CG9757-RB 204..292 206..294 310 89.9 Plus
CG9757-RB 851 CG9757-RB 246..334 164..252 310 89.9 Plus
CG9757-RA 568 CG9757-RA 204..292 206..294 310 89.9 Plus
CG9757-RA 568 CG9757-RA 246..334 164..252 310 89.9 Plus
CG9757-RB 851 CG9757-RB 204..272 227..295 225 88.4 Plus
CG9757-RB 851 CG9757-RB 267..335 164..232 225 88.4 Plus
CG9757-RA 568 CG9757-RA 204..272 227..295 225 88.4 Plus
CG9757-RA 568 CG9757-RA 267..335 164..232 225 88.4 Plus
CG9757-RB 851 CG9757-RB 207..259 329..381 205 92.5 Plus
CG9757-RB 851 CG9757-RB 369..421 167..219 205 92.5 Plus
CG9757-RA 568 CG9757-RA 207..259 329..381 205 92.5 Plus
CG9757-RA 568 CG9757-RA 369..421 167..219 205 92.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13611997..13612377 397..17 1905 100 Minus
3R 32079331 3R 13612100..13612188 252..164 310 89.9 Minus
3R 32079331 3R 13612142..13612230 294..206 310 89.9 Minus
3R 32079331 3R 13612099..13612167 232..164 225 88.4 Minus
3R 32079331 3R 13612162..13612230 295..227 225 88.4 Minus
3R 32079331 3R 13612013..13612065 219..167 205 92.5 Minus
3R 32079331 3R 13612175..13612227 381..329 205 92.5 Minus
Blast to na_te.dros performed on 2014-11-27 13:58:08 has no hits.

BO11684.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:00 Download gff for BO11684.complete
Subject Subject Range Query Range Percent Splice Strand
CG9757-RA 1..384 17..398 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:06 Download gff for BO11684.complete
Subject Subject Range Query Range Percent Splice Strand
CG9757-RA 44..433 8..397 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:03 Download gff for BO11684.complete
Subject Subject Range Query Range Percent Splice Strand
CG9757-RA 57..437 17..399 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:01 Download gff for BO11684.complete
Subject Subject Range Query Range Percent Splice Strand
CG9757-RA 44..433 8..397 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:24 Download gff for BO11684.complete
Subject Subject Range Query Range Percent Splice Strand
CG9757-RA 57..437 17..399 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:24 Download gff for BO11684.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13611995..13612377 17..399 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:03 Download gff for BO11684.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9437717..9438099 17..399 99   Minus

BO11684.pep Sequence

Translation from 16 to 415

> BO11684.pep
MRTFVCLALATILLVAGSSAATYDPVAAQLLDVDAGVQAPVAARQARQFG
GGFGGPGGGFGGPGGGFGGQGGGFGGPGGGFGGQGGGFGGQGGFGGGGFG
GRPGGGFGGPGGGFGGPGGGFGGGFGGASFLDH

BO11684.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9757-PB 127 CG9757-PB 1..127 1..127 705 100 Plus
CG9757-PA 127 CG9757-PA 1..127 1..127 705 100 Plus
CG7299-PC 177 CG7299-PC 1..128 1..129 277 54.7 Plus
CG7299-PA 177 CG7299-PA 1..128 1..129 277 54.7 Plus
CG8157-PB 113 CG8157-PB 7..98 37..127 258 65.3 Plus
CG7299-PC 177 CG7299-PC 69..152 51..129 230 65.9 Plus
CG7299-PA 177 CG7299-PA 69..152 51..129 230 65.9 Plus