Clone Sequence Records
BO11684.3prime Sequence
413 bp (412 high quality bases) assembled on 2006-04-19
> BO11684.3prime
ATGGTCTAGAAAGCTTGCGCCTCCAAATCCGCCACCGAAGCCACCGCCTG
GTCCTCCGAAGCCGCCTCCCGGACCGCCAAAGCCGCCACCTGGACGTCCA
CCAAAGCCACCGCCTCCGAAGCCGCCTTGACCTCCGAATCCGCCGCCTTG
ACCTCCGAATCCACCGCCTGGACCTCCGAATCCGCCGCCTTGACCTCCGA
ATCCGCCGCCTGGACCTCCGAAACCGCCTCCCGGACCGCCAAAGCCGCCG
CCAAACTGACGTGCTTGGCGTGCTGCCACCGGAGCCTGGACACCTGCATC
CACATCCAGAAGTTGCGCCGCCACAGGATCATATGTGGCTGCTGATGAGC
CGGCGACCAGGAGAATGGTCGCCAGGGCAAGGCAAACAAATGTGCGCATG
TCGACTGATAACT
BO11684.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9757-PA | 384 | CG9757-RA | 1..381 | 399..19 | 1905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9757-RB | 851 | CG9757-RB | 57..437 | 399..19 | 1905 | 100 | Minus |
CG9757-RA | 568 | CG9757-RA | 57..437 | 399..19 | 1905 | 100 | Minus |
CG9757-RB | 851 | CG9757-RB | 204..292 | 210..122 | 310 | 89.9 | Minus |
CG9757-RB | 851 | CG9757-RB | 246..334 | 252..164 | 310 | 89.9 | Minus |
CG9757-RA | 568 | CG9757-RA | 204..292 | 210..122 | 310 | 89.9 | Minus |
CG9757-RA | 568 | CG9757-RA | 246..334 | 252..164 | 310 | 89.9 | Minus |
CG9757-RB | 851 | CG9757-RB | 204..272 | 189..121 | 225 | 88.4 | Minus |
CG9757-RB | 851 | CG9757-RB | 267..335 | 252..184 | 225 | 88.4 | Minus |
CG9757-RA | 568 | CG9757-RA | 204..272 | 189..121 | 225 | 88.4 | Minus |
CG9757-RA | 568 | CG9757-RA | 267..335 | 252..184 | 225 | 88.4 | Minus |
CG9757-RB | 851 | CG9757-RB | 369..421 | 249..197 | 205 | 92.5 | Minus |
CG9757-RB | 851 | CG9757-RB | 207..259 | 87..35 | 205 | 92.5 | Minus |
CG9757-RA | 568 | CG9757-RA | 207..259 | 87..35 | 205 | 92.5 | Minus |
CG9757-RA | 568 | CG9757-RA | 369..421 | 249..197 | 205 | 92.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13611997..13612377 | 19..399 | 1905 | 100 | Plus |
3R | 32079331 | 3R | 13612100..13612188 | 164..252 | 310 | 89.9 | Plus |
3R | 32079331 | 3R | 13612142..13612230 | 122..210 | 310 | 89.9 | Plus |
3R | 32079331 | 3R | 13612099..13612167 | 184..252 | 225 | 88.4 | Plus |
3R | 32079331 | 3R | 13612162..13612230 | 121..189 | 225 | 88.4 | Plus |
3R | 32079331 | 3R | 13612175..13612227 | 35..87 | 205 | 92.5 | Plus |
3R | 32079331 | 3R | 13612013..13612065 | 197..249 | 205 | 92.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:39:51 has no hits.
BO11684.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:37 Download gff for
BO11684.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9757-PA | 1..384 | 18..399 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:05 Download gff for
BO11684.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9757-PA | 1..384 | 18..399 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 16:55:42 Download gff for
BO11684.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9757-RA | 48..437 | 19..408 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:20:20 Download gff for
BO11684.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9757-RA | 48..437 | 19..408 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:20:20 Download gff for
BO11684.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13611997..13612386 | 19..408 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 16:55:42 Download gff for
BO11684.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9437719..9438108 | 19..408 | 98 | | Plus |
BO11684.5prime Sequence
413 bp (412 high quality bases) assembled on 2006-04-19
> BO11684.5prime
GAAGTTATCAGTCGACATGCGCACATTTGTTTGCCTTGCCCTGGCGACCA
TTCTCCTGGTCGCCGGCTCATCAGCAGCCACATATGATCCTGTGGCGGCG
CAACTTCTGGATGTGGATGCAGGTGTCCAGGCTCCGGTGGCAGCACGCCA
AGCACGTCAGTTTGGCGGCGGCTTTGGCGGTCCGGGAGGCGGTTTCGGAG
GTCCAGGCGGCGGATTCGGAGGTCAAGGCGGCGGATTCGGAGGTCCAGGC
GGTGGATTCGGAGGTCAAGGCGGCGGATTCGGAGGTCAAGGCGGCTTCGG
AGGCGGTGGCTTTGGTGGACGTCCAGGTGGCGGCTTTGGCGGTCCGGGAG
GCGGCTTCGGAGGACCAGGCGGTGGCTTCGGTGGCGGATTTGGAGGCGCA
AGCTTTCTAGACC
BO11684.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9757-PA | 384 | CG9757-RA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:18:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9757-RB | 851 | CG9757-RB | 57..437 | 17..397 | 1905 | 100 | Plus |
CG9757-RA | 568 | CG9757-RA | 57..437 | 17..397 | 1905 | 100 | Plus |
CG9757-RB | 851 | CG9757-RB | 204..292 | 206..294 | 310 | 89.9 | Plus |
CG9757-RB | 851 | CG9757-RB | 246..334 | 164..252 | 310 | 89.9 | Plus |
CG9757-RA | 568 | CG9757-RA | 204..292 | 206..294 | 310 | 89.9 | Plus |
CG9757-RA | 568 | CG9757-RA | 246..334 | 164..252 | 310 | 89.9 | Plus |
CG9757-RB | 851 | CG9757-RB | 204..272 | 227..295 | 225 | 88.4 | Plus |
CG9757-RB | 851 | CG9757-RB | 267..335 | 164..232 | 225 | 88.4 | Plus |
CG9757-RA | 568 | CG9757-RA | 204..272 | 227..295 | 225 | 88.4 | Plus |
CG9757-RA | 568 | CG9757-RA | 267..335 | 164..232 | 225 | 88.4 | Plus |
CG9757-RB | 851 | CG9757-RB | 207..259 | 329..381 | 205 | 92.5 | Plus |
CG9757-RB | 851 | CG9757-RB | 369..421 | 167..219 | 205 | 92.5 | Plus |
CG9757-RA | 568 | CG9757-RA | 207..259 | 329..381 | 205 | 92.5 | Plus |
CG9757-RA | 568 | CG9757-RA | 369..421 | 167..219 | 205 | 92.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13611997..13612377 | 397..17 | 1905 | 100 | Minus |
3R | 32079331 | 3R | 13612100..13612188 | 252..164 | 310 | 89.9 | Minus |
3R | 32079331 | 3R | 13612142..13612230 | 294..206 | 310 | 89.9 | Minus |
3R | 32079331 | 3R | 13612099..13612167 | 232..164 | 225 | 88.4 | Minus |
3R | 32079331 | 3R | 13612162..13612230 | 295..227 | 225 | 88.4 | Minus |
3R | 32079331 | 3R | 13612175..13612227 | 381..329 | 205 | 92.5 | Minus |
3R | 32079331 | 3R | 13612013..13612065 | 219..167 | 205 | 92.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:17:58 has no hits.
BO11684.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:38 Download gff for
BO11684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9757-PA | 1..384 | 17..398 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:06 Download gff for
BO11684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9757-PA | 1..384 | 17..398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:25:47 Download gff for
BO11684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9757-RA | 48..437 | 8..397 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:49:04 Download gff for
BO11684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9757-RA | 48..437 | 8..397 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:49:04 Download gff for
BO11684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13611997..13612386 | 8..397 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:25:47 Download gff for
BO11684.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9437719..9438108 | 8..397 | 98 | | Minus |
BO11684.complete Sequence
415 bp assembled on 2006-10-11
GenBank Submission: FJ632156
> BO11684.complete
GAAGTTATCAGTCGACATGCGCACATTTGTTTGCCTTGCCCTGGCGACCA
TTCTCCTGGTCGCCGGCTCATCAGCAGCCACATATGATCCTGTGGCGGCG
CAACTTCTGGATGTGGATGCAGGTGTCCAGGCTCCGGTGGCAGCACGCCA
AGCACGTCAGTTTGGCGGCGGCTTTGGCGGTCCGGGAGGCGGTTTCGGAG
GTCCAGGCGGCGGATTCGGAGGTCAAGGCGGCGGATTCGGAGGTCCAGGC
GGTGGATTCGGAGGTCAAGGCGGCGGATTCGGAGGTCAAGGCGGCTTCGG
AGGCGGTGGCTTTGGTGGACGTCCAGGTGGCGGCTTTGGCGGTCCGGGAG
GCGGCTTCGGAGGACCAGGCGGTGGCTTCGGTGGCGGATTTGGAGGCGCA
AGCTTTCTAGACCAT
BO11684.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9757-RB | 384 | CG9757-PB | 1..381 | 17..397 | 1905 | 100 | Plus |
CG9757-RA | 384 | CG9757-PA | 1..381 | 17..397 | 1905 | 100 | Plus |
CG9757-RB | 384 | CG9757-PB | 148..236 | 206..294 | 310 | 89.9 | Plus |
CG9757-RB | 384 | CG9757-PB | 190..278 | 164..252 | 310 | 89.9 | Plus |
CG9757-RA | 384 | CG9757-PA | 148..236 | 206..294 | 310 | 89.9 | Plus |
CG9757-RA | 384 | CG9757-PA | 190..278 | 164..252 | 310 | 89.9 | Plus |
CG9757-RB | 384 | CG9757-PB | 148..216 | 227..295 | 225 | 88.4 | Plus |
CG9757-RB | 384 | CG9757-PB | 211..279 | 164..232 | 225 | 88.4 | Plus |
CG9757-RA | 384 | CG9757-PA | 148..216 | 227..295 | 225 | 88.4 | Plus |
CG9757-RA | 384 | CG9757-PA | 211..279 | 164..232 | 225 | 88.4 | Plus |
CG9757-RB | 384 | CG9757-PB | 151..203 | 329..381 | 205 | 92.5 | Plus |
CG9757-RB | 384 | CG9757-PB | 313..365 | 167..219 | 205 | 92.5 | Plus |
CG9757-RA | 384 | CG9757-PA | 151..203 | 329..381 | 205 | 92.5 | Plus |
CG9757-RA | 384 | CG9757-PA | 313..365 | 167..219 | 205 | 92.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9757-RB | 851 | CG9757-RB | 57..437 | 17..397 | 1905 | 100 | Plus |
CG9757-RA | 568 | CG9757-RA | 57..437 | 17..397 | 1905 | 100 | Plus |
CG9757-RB | 851 | CG9757-RB | 204..292 | 206..294 | 310 | 89.9 | Plus |
CG9757-RB | 851 | CG9757-RB | 246..334 | 164..252 | 310 | 89.9 | Plus |
CG9757-RA | 568 | CG9757-RA | 204..292 | 206..294 | 310 | 89.9 | Plus |
CG9757-RA | 568 | CG9757-RA | 246..334 | 164..252 | 310 | 89.9 | Plus |
CG9757-RB | 851 | CG9757-RB | 204..272 | 227..295 | 225 | 88.4 | Plus |
CG9757-RB | 851 | CG9757-RB | 267..335 | 164..232 | 225 | 88.4 | Plus |
CG9757-RA | 568 | CG9757-RA | 204..272 | 227..295 | 225 | 88.4 | Plus |
CG9757-RA | 568 | CG9757-RA | 267..335 | 164..232 | 225 | 88.4 | Plus |
CG9757-RB | 851 | CG9757-RB | 207..259 | 329..381 | 205 | 92.5 | Plus |
CG9757-RB | 851 | CG9757-RB | 369..421 | 167..219 | 205 | 92.5 | Plus |
CG9757-RA | 568 | CG9757-RA | 207..259 | 329..381 | 205 | 92.5 | Plus |
CG9757-RA | 568 | CG9757-RA | 369..421 | 167..219 | 205 | 92.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13611997..13612377 | 397..17 | 1905 | 100 | Minus |
3R | 32079331 | 3R | 13612100..13612188 | 252..164 | 310 | 89.9 | Minus |
3R | 32079331 | 3R | 13612142..13612230 | 294..206 | 310 | 89.9 | Minus |
3R | 32079331 | 3R | 13612099..13612167 | 232..164 | 225 | 88.4 | Minus |
3R | 32079331 | 3R | 13612162..13612230 | 295..227 | 225 | 88.4 | Minus |
3R | 32079331 | 3R | 13612013..13612065 | 219..167 | 205 | 92.5 | Minus |
3R | 32079331 | 3R | 13612175..13612227 | 381..329 | 205 | 92.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:58:08 has no hits.
BO11684.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:00 Download gff for
BO11684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9757-RA | 1..384 | 17..398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:06 Download gff for
BO11684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9757-RA | 44..433 | 8..397 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:03 Download gff for
BO11684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9757-RA | 57..437 | 17..399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:01 Download gff for
BO11684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9757-RA | 44..433 | 8..397 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:24 Download gff for
BO11684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9757-RA | 57..437 | 17..399 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:24 Download gff for
BO11684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13611995..13612377 | 17..399 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:03 Download gff for
BO11684.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9437717..9438099 | 17..399 | 99 | | Minus |
BO11684.pep Sequence
Translation from 16 to 415
> BO11684.pep
MRTFVCLALATILLVAGSSAATYDPVAAQLLDVDAGVQAPVAARQARQFG
GGFGGPGGGFGGPGGGFGGQGGGFGGPGGGFGGQGGGFGGQGGFGGGGFG
GRPGGGFGGPGGGFGGPGGGFGGGFGGASFLDH
BO11684.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9757-PB | 127 | CG9757-PB | 1..127 | 1..127 | 705 | 100 | Plus |
CG9757-PA | 127 | CG9757-PA | 1..127 | 1..127 | 705 | 100 | Plus |
CG7299-PC | 177 | CG7299-PC | 1..128 | 1..129 | 277 | 54.7 | Plus |
CG7299-PA | 177 | CG7299-PA | 1..128 | 1..129 | 277 | 54.7 | Plus |
CG8157-PB | 113 | CG8157-PB | 7..98 | 37..127 | 258 | 65.3 | Plus |
CG7299-PC | 177 | CG7299-PC | 69..152 | 51..129 | 230 | 65.9 | Plus |
CG7299-PA | 177 | CG7299-PA | 69..152 | 51..129 | 230 | 65.9 | Plus |