Clone BO11685 Report

Search the DGRC for BO11685

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:116
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptRpn11-RA
Protein status:BO11685.pep: validated full length
Sequenced Size:958

Clone Sequence Records

BO11685.3prime Sequence

820 bp (819 high quality bases) assembled on 2006-04-19

> BO11685.3prime
ATGGTCTAGAAAGCTTGCCTTAAAGACTATGGTGTCCAGCATGGCGCCCA
GGCACTGCACAATATTGTTCTGCATAACCTTGTCCACCTTCTCCTCCAAA
TGCCGCTTGGGGTCCTGCTTGCCCACGTTCTTGATCGCCAGCTGCTCGGG
CGTCATTTTCTCCTCGTCCTCCAGTGACTTGTTGTAGTTCTTGGCGAGAT
CCAGCATCTCGGCCACGGTGTCCTCGTTGATGGAACAGTGCTCATTGTAG
TCGGACAACGTGAGGCCGTCCTTCCACGACTTTTTGTGCAGATTGAGAAG
CATCTTCTGCTCCAGTTCGTTCTTGCGGTAGTTTATGCTAATCGAGTAGT
AGTGGCGATTGAGCCCGTGGATCAGGGCCTGTACGGAGGGCTTTTGCAGA
TGACCCAAATTGGAGGTTGTCTGCCGGGGCTCCTGTCCCAGCACAAGCAT
GTTGGGATTGATCAGGCGGAAGGCATCGATGACCACTTTGCCCTTGACAG
ACTGAATGGGATCGACGACGACGGCTACGGCTCGCTCCGACAGCGCCTCG
AAGGATTGCTGCGTATTGATGTCCACGCCGGACAGCCAGCAGCCGAAACC
GGGATGCGAGTGATACCAGCCGACGACCATTTCGGGTCGACCCGTCTGCT
TCAGCATGTCCAACATCTTCGCCTGAAAGACGGGATCCACGGCCTCTACG
GATACTCCAGTACCCGTTTGCGGCATGGCGAACACATCGATGACCTGCAC
CGTGTAGTCGTCCACGAATTCGCCCAACATCAGACCCATCACCTCCATGG
GCACGCCGGCCCGTCCGTGC

BO11685.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG18174-PA 927 Rpn11-RA 123..924 820..19 4010 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn11-RA 1208 CG18174-RA 293..1094 820..19 4010 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5058786..5059428 178..820 3215 100 Plus
2L 23513712 2L 5058518..5058678 19..179 805 100 Plus
Blast to na_te.dros performed on 2015-02-06 18:38:42 has no hits.

BO11685.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:39 Download gff for BO11685.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn11-PA 123..927 16..820 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:08 Download gff for BO11685.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18174-PA 123..927 16..820 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:41:07 Download gff for BO11685.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 293..1101 10..820 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:45:37 Download gff for BO11685.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 293..1101 10..820 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:45:37 Download gff for BO11685.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5058511..5058676 10..177 97 <- Plus
2L 5058786..5059428 178..820 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:41:07 Download gff for BO11685.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5058511..5058676 10..177 97 <- Plus
arm_2L 5058786..5059428 178..820 100   Plus

BO11685.5prime Sequence

867 bp (805 high quality bases) assembled on 2006-04-19

> BO11685.5prime
GAAGTTATCAGTCGACATGGATCGTCTGCTACGTCTTGGAGGTGCTATGC
CACAGGCCGCCCCGCCCACAGATGCGCCCGTCGTAGACACCGCCGAGCAG
GTGTACATCTCGTCCTTGGCCCTGCTCAAGATGCTTAAGCACGGACGGGC
CGGCGTGCCCATGGAGGTGATGGGTCTGATGTTGGGCGAATTCGTGGACG
ACTACACGGTGCAGGTCATCGATGTGTTCGCCATGCCGCAAACGGGTACT
GGAGTATCCGTAGAGGCCGTGGATCCCGTCTTTCAGGCGAAGATGTTGGA
CATGCTGAAGCAGACGGGTCGACCCGAAATGGTCGTCGGCTGGTATCACT
CGCATCCCGGTTTCGGCTGCTGGCTGTCCGGCGTGGACATCAATACGCAG
CAATCCTTCGAGGCGCTGTCGGAGCGAGCCGTAGCCGTCGTCGTCGATCC
CATTCAGTCTGTCAAGGGCAAAGTGGTCATCGATGCCTTCCGCCTGATCA
ATCCCAACATGCTTGTGCTGGGACAGGAGCCCCGGCAGACAACCTCCAAT
TTGGGTCATCTGCAAAAGCCCTCCGTACAGGCCCTGATCCACGGGCTCAA
TCGCCACTACTACTCGATTAGCATAAACTACCGCAAGAACGAACTGGAGC
AGAAGATGCTTCTCAATCTGCACAAAAAGTCGTGGAAGGACGGCCTCACG
TTGTCCGACTACAATGAGCACTGTTCCATCAACGAGGACACCGTGGCCGA
GATGCTGGATCTCGCCAAGAACTACAACAAGTCCACTGGAGGACGAGGAG
AAAATGACGCCCGAGCACCTGGCGATCAAGAACGTGGGCAAGCAGGACCC
CAAGCGGCATTTGGGAG

BO11685.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG18174-PA 927 Rpn11-RA 1..767 17..783 3835 100 Plus
CG18174-PA 927 Rpn11-RA 767..847 784..864 380 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn11-RA 1208 CG18174-RA 171..1017 17..864 4200 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5058786..5059550 781..17 3825 100 Minus
2L 23513712 2L 5058595..5058675 864..784 390 98.8 Minus
Blast to na_te.dros performed on 2015-02-12 05:02:41 has no hits.

BO11685.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:40 Download gff for BO11685.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn11-PA 1..849 17..867 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:09 Download gff for BO11685.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18174-PA 1..849 17..867 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:50:01 Download gff for BO11685.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 165..1019 9..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:55:13 Download gff for BO11685.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 165..1019 9..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:55:13 Download gff for BO11685.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5058786..5059556 9..781 99   Minus
2L 5058593..5058676 782..867 96 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:50:01 Download gff for BO11685.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5058593..5058676 782..867 96 <- Minus
arm_2L 5058786..5059556 9..781 99   Minus

BO11685.complete Sequence

958 bp assembled on 2006-10-11

GenBank Submission: FJ632157

> BO11685.complete
GAAGTTATCAGTCGACATGGATCGTCTGCTACGTCTTGGAGGTGCTATGC
CACAGGCCGCCCCGCCCACAGATGCGCCCGTCGTAGACACCGCCGAGCAG
GTGTACATCTCGTCCTTGGCCCTGCTCAAGATGCTTAAGCACGGACGGGC
CGGCGTGCCCATGGAGGTGATGGGTCTGATGTTGGGCGAATTCGTGGACG
ACTACACGGTGCAGGTCATCGATGTGTTCGCCATGCCGCAAACGGGTACT
GGAGTATCCGTAGAGGCCGTGGATCCCGTCTTTCAGGCGAAGATGTTGGA
CATGCTGAAGCAGACGGGTCGACCCGAAATGGTCGTCGGCTGGTATCACT
CGCATCCCGGTTTCGGCTGCTGGCTGTCCGGCGTGGACATCAATACGCAG
CAATCCTTCGAGGCGCTGTCGGAGCGAGCCGTAGCCGTCGTCGTCGATCC
CATTCAGTCTGTCAAGGGCAAAGTGGTCATCGATGCCTTCCGCCTGATCA
ATCCCAACATGCTTGTGCTGGGACAGGAGCCCCGGCAGACAACCTCCAAT
TTGGGTCATCTGCAAAAGCCCTCCGTACAGGCCCTGATCCACGGGCTCAA
TCGCCACTACTACTCGATTAGCATAAACTACCGCAAGAACGAACTGGAGC
AGAAGATGCTTCTCAATCTGCACAAAAAGTCGTGGAAGGACGGCCTCACG
TTGTCCGACTACAATGAGCACTGTTCCATCAACGAGGACACCGTGGCCGA
GATGCTGGATCTCGCCAAGAACTACAACAAGTCACTGGAGGACGAGGAGA
AAATGACGCCCGAGCAGCTGGCGATCAAGAACGTGGGCAAGCAGGACCCC
AAGCGGCATTTGGAGGAGAAGGTGGACAAGGTTATGCAGAACAATATTGT
GCAGTGCCTGGGCGCCATGCTGGACACCATAGTCTTTAAGGCAAGCTTTC
TAGACCAT

BO11685.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn11-RA 927 CG18174-PA 1..924 17..940 4620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn11-RA 1208 CG18174-RA 171..1094 17..940 4620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5058786..5059550 781..17 3825 100 Minus
2L 23513712 2L 5058518..5058678 940..780 805 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:57:25 has no hits.

BO11685.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:32 Download gff for BO11685.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 1..927 17..943 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:11 Download gff for BO11685.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 191..1127 9..949 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:13 Download gff for BO11685.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 171..1094 17..942 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:32 Download gff for BO11685.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 191..1127 9..949 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:51 Download gff for BO11685.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn11-RA 171..1094 17..942 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:51 Download gff for BO11685.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5058515..5058676 782..942 98 <- Minus
2L 5058786..5059550 17..781 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:13 Download gff for BO11685.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5058515..5058676 782..942 98 <- Minus
arm_2L 5058786..5059550 17..781 100   Minus

BO11685.pep Sequence

Translation from 16 to 958

> BO11685.pep
MDRLLRLGGAMPQAAPPTDAPVVDTAEQVYISSLALLKMLKHGRAGVPME
VMGLMLGEFVDDYTVQVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQT
GRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK
GKVVIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYS
ISINYRKNELEQKMLLNLHKKSWKDGLTLSDYNEHCSINEDTVAEMLDLA
KNYNKSLEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDKVMQNNIVQCLGA
MLDTIVFKASFLDH

BO11685.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn11-PA 308 CG18174-PA 1..308 1..308 1592 100 Plus
CSN5-PB 325 CG14884-PB 50..273 27..256 376 38 Plus
CSN5-PA 327 CG14884-PA 50..273 27..256 376 38 Plus