Clone Sequence Records
BO11685.3prime Sequence
820 bp (819 high quality bases) assembled on 2006-04-19
> BO11685.3prime
ATGGTCTAGAAAGCTTGCCTTAAAGACTATGGTGTCCAGCATGGCGCCCA
GGCACTGCACAATATTGTTCTGCATAACCTTGTCCACCTTCTCCTCCAAA
TGCCGCTTGGGGTCCTGCTTGCCCACGTTCTTGATCGCCAGCTGCTCGGG
CGTCATTTTCTCCTCGTCCTCCAGTGACTTGTTGTAGTTCTTGGCGAGAT
CCAGCATCTCGGCCACGGTGTCCTCGTTGATGGAACAGTGCTCATTGTAG
TCGGACAACGTGAGGCCGTCCTTCCACGACTTTTTGTGCAGATTGAGAAG
CATCTTCTGCTCCAGTTCGTTCTTGCGGTAGTTTATGCTAATCGAGTAGT
AGTGGCGATTGAGCCCGTGGATCAGGGCCTGTACGGAGGGCTTTTGCAGA
TGACCCAAATTGGAGGTTGTCTGCCGGGGCTCCTGTCCCAGCACAAGCAT
GTTGGGATTGATCAGGCGGAAGGCATCGATGACCACTTTGCCCTTGACAG
ACTGAATGGGATCGACGACGACGGCTACGGCTCGCTCCGACAGCGCCTCG
AAGGATTGCTGCGTATTGATGTCCACGCCGGACAGCCAGCAGCCGAAACC
GGGATGCGAGTGATACCAGCCGACGACCATTTCGGGTCGACCCGTCTGCT
TCAGCATGTCCAACATCTTCGCCTGAAAGACGGGATCCACGGCCTCTACG
GATACTCCAGTACCCGTTTGCGGCATGGCGAACACATCGATGACCTGCAC
CGTGTAGTCGTCCACGAATTCGCCCAACATCAGACCCATCACCTCCATGG
GCACGCCGGCCCGTCCGTGC
BO11685.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18174-PA | 927 | Rpn11-RA | 123..924 | 820..19 | 4010 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:38:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn11-RA | 1208 | CG18174-RA | 293..1094 | 820..19 | 4010 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5058786..5059428 | 178..820 | 3215 | 100 | Plus |
2L | 23513712 | 2L | 5058518..5058678 | 19..179 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 18:38:42 has no hits.
BO11685.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:39 Download gff for
BO11685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-PA | 123..927 | 16..820 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:08 Download gff for
BO11685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18174-PA | 123..927 | 16..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:41:07 Download gff for
BO11685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-RA | 293..1101 | 10..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:45:37 Download gff for
BO11685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-RA | 293..1101 | 10..820 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:45:37 Download gff for
BO11685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5058511..5058676 | 10..177 | 97 | <- | Plus |
2L | 5058786..5059428 | 178..820 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:41:07 Download gff for
BO11685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5058511..5058676 | 10..177 | 97 | <- | Plus |
arm_2L | 5058786..5059428 | 178..820 | 100 | | Plus |
BO11685.5prime Sequence
867 bp (805 high quality bases) assembled on 2006-04-19
> BO11685.5prime
GAAGTTATCAGTCGACATGGATCGTCTGCTACGTCTTGGAGGTGCTATGC
CACAGGCCGCCCCGCCCACAGATGCGCCCGTCGTAGACACCGCCGAGCAG
GTGTACATCTCGTCCTTGGCCCTGCTCAAGATGCTTAAGCACGGACGGGC
CGGCGTGCCCATGGAGGTGATGGGTCTGATGTTGGGCGAATTCGTGGACG
ACTACACGGTGCAGGTCATCGATGTGTTCGCCATGCCGCAAACGGGTACT
GGAGTATCCGTAGAGGCCGTGGATCCCGTCTTTCAGGCGAAGATGTTGGA
CATGCTGAAGCAGACGGGTCGACCCGAAATGGTCGTCGGCTGGTATCACT
CGCATCCCGGTTTCGGCTGCTGGCTGTCCGGCGTGGACATCAATACGCAG
CAATCCTTCGAGGCGCTGTCGGAGCGAGCCGTAGCCGTCGTCGTCGATCC
CATTCAGTCTGTCAAGGGCAAAGTGGTCATCGATGCCTTCCGCCTGATCA
ATCCCAACATGCTTGTGCTGGGACAGGAGCCCCGGCAGACAACCTCCAAT
TTGGGTCATCTGCAAAAGCCCTCCGTACAGGCCCTGATCCACGGGCTCAA
TCGCCACTACTACTCGATTAGCATAAACTACCGCAAGAACGAACTGGAGC
AGAAGATGCTTCTCAATCTGCACAAAAAGTCGTGGAAGGACGGCCTCACG
TTGTCCGACTACAATGAGCACTGTTCCATCAACGAGGACACCGTGGCCGA
GATGCTGGATCTCGCCAAGAACTACAACAAGTCCACTGGAGGACGAGGAG
AAAATGACGCCCGAGCACCTGGCGATCAAGAACGTGGGCAAGCAGGACCC
CAAGCGGCATTTGGGAG
BO11685.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:28:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18174-PA | 927 | Rpn11-RA | 1..767 | 17..783 | 3835 | 100 | Plus |
CG18174-PA | 927 | Rpn11-RA | 767..847 | 784..864 | 380 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:02:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn11-RA | 1208 | CG18174-RA | 171..1017 | 17..864 | 4200 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:02:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5058786..5059550 | 781..17 | 3825 | 100 | Minus |
2L | 23513712 | 2L | 5058595..5058675 | 864..784 | 390 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:02:41 has no hits.
BO11685.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:13:40 Download gff for
BO11685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-PA | 1..849 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:40:09 Download gff for
BO11685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18174-PA | 1..849 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:50:01 Download gff for
BO11685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-RA | 165..1019 | 9..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:55:13 Download gff for
BO11685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-RA | 165..1019 | 9..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:55:13 Download gff for
BO11685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5058786..5059556 | 9..781 | 99 | | Minus |
2L | 5058593..5058676 | 782..867 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:50:01 Download gff for
BO11685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5058593..5058676 | 782..867 | 96 | <- | Minus |
arm_2L | 5058786..5059556 | 9..781 | 99 | | Minus |
BO11685.complete Sequence
958 bp assembled on 2006-10-11
GenBank Submission: FJ632157
> BO11685.complete
GAAGTTATCAGTCGACATGGATCGTCTGCTACGTCTTGGAGGTGCTATGC
CACAGGCCGCCCCGCCCACAGATGCGCCCGTCGTAGACACCGCCGAGCAG
GTGTACATCTCGTCCTTGGCCCTGCTCAAGATGCTTAAGCACGGACGGGC
CGGCGTGCCCATGGAGGTGATGGGTCTGATGTTGGGCGAATTCGTGGACG
ACTACACGGTGCAGGTCATCGATGTGTTCGCCATGCCGCAAACGGGTACT
GGAGTATCCGTAGAGGCCGTGGATCCCGTCTTTCAGGCGAAGATGTTGGA
CATGCTGAAGCAGACGGGTCGACCCGAAATGGTCGTCGGCTGGTATCACT
CGCATCCCGGTTTCGGCTGCTGGCTGTCCGGCGTGGACATCAATACGCAG
CAATCCTTCGAGGCGCTGTCGGAGCGAGCCGTAGCCGTCGTCGTCGATCC
CATTCAGTCTGTCAAGGGCAAAGTGGTCATCGATGCCTTCCGCCTGATCA
ATCCCAACATGCTTGTGCTGGGACAGGAGCCCCGGCAGACAACCTCCAAT
TTGGGTCATCTGCAAAAGCCCTCCGTACAGGCCCTGATCCACGGGCTCAA
TCGCCACTACTACTCGATTAGCATAAACTACCGCAAGAACGAACTGGAGC
AGAAGATGCTTCTCAATCTGCACAAAAAGTCGTGGAAGGACGGCCTCACG
TTGTCCGACTACAATGAGCACTGTTCCATCAACGAGGACACCGTGGCCGA
GATGCTGGATCTCGCCAAGAACTACAACAAGTCACTGGAGGACGAGGAGA
AAATGACGCCCGAGCAGCTGGCGATCAAGAACGTGGGCAAGCAGGACCCC
AAGCGGCATTTGGAGGAGAAGGTGGACAAGGTTATGCAGAACAATATTGT
GCAGTGCCTGGGCGCCATGCTGGACACCATAGTCTTTAAGGCAAGCTTTC
TAGACCAT
BO11685.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn11-RA | 927 | CG18174-PA | 1..924 | 17..940 | 4620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn11-RA | 1208 | CG18174-RA | 171..1094 | 17..940 | 4620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5058786..5059550 | 781..17 | 3825 | 100 | Minus |
2L | 23513712 | 2L | 5058518..5058678 | 940..780 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:57:25 has no hits.
BO11685.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:32 Download gff for
BO11685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-RA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:11 Download gff for
BO11685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-RA | 191..1127 | 9..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:13 Download gff for
BO11685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-RA | 171..1094 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:32 Download gff for
BO11685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-RA | 191..1127 | 9..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:51 Download gff for
BO11685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn11-RA | 171..1094 | 17..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:51 Download gff for
BO11685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5058515..5058676 | 782..942 | 98 | <- | Minus |
2L | 5058786..5059550 | 17..781 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:13 Download gff for
BO11685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5058515..5058676 | 782..942 | 98 | <- | Minus |
arm_2L | 5058786..5059550 | 17..781 | 100 | | Minus |
BO11685.pep Sequence
Translation from 16 to 958
> BO11685.pep
MDRLLRLGGAMPQAAPPTDAPVVDTAEQVYISSLALLKMLKHGRAGVPME
VMGLMLGEFVDDYTVQVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQT
GRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK
GKVVIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYS
ISINYRKNELEQKMLLNLHKKSWKDGLTLSDYNEHCSINEDTVAEMLDLA
KNYNKSLEDEEKMTPEQLAIKNVGKQDPKRHLEEKVDKVMQNNIVQCLGA
MLDTIVFKASFLDH
BO11685.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn11-PA | 308 | CG18174-PA | 1..308 | 1..308 | 1592 | 100 | Plus |
CSN5-PB | 325 | CG14884-PB | 50..273 | 27..256 | 376 | 38 | Plus |
CSN5-PA | 327 | CG14884-PA | 50..273 | 27..256 | 376 | 38 | Plus |